RNA id: XM_021571192.2


Basic Information

Item Value
RNA id XM_021571192.2
length 4982
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110495772
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19908603 ~ 19954099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGAGCCGAGCTGCGGGTGTTCCTGACACTCACTGAAGGTTTGAAATGTGGATGTGAACTGGACTCTGACTCAGAAATAAATTGCAAACACCTGAAGCCTACTTGTCAGACAAGTGAATAAGATTTTGCTAAGTCATTTGGTGCTGCGGTTTTATCCTATTTGACTATATTTGCATTGTACAGCCTACTGTAATCACTTGACAGTTCACAGCCACCACCATTCCCCCCTAGCGCACCATTGTCGCACTACACATTTCCCTTTCTCTCATCATGTAAGTGCTGCCCCCTGTACAACGGCTTGAACCCGGGCTGGTTCCCGACTGTACCGTGTGCTCGAAGGGAGAAATATGCAATTTACATTTCTGGATGAAATCTCTTCTTGGAATGGTTTACCTCCAGTGAAGGTTGATGTTTCCTAGTCGGGAATCCCCAGGGTTGCTTTCAAGATTGACACCCGACAGCTTGCGGCCTCTGCCAATCTCCTGAGCGAGCTCCGCCTCCCACCGGACAAGACTGCCCACAAGCTCCCGCTGCATCTGCCTGCGGCAAAGCCCAGCAACCTCCGTGAGGCCCTTGGCCAATTGCCCGGGAGGAAGGACCTCGTCGCCATGGACACGGAGTCCACCTACTCAGGGTACTCGTACTACTCTGGTCGCTCCCGGGGATCCCACAGACATGGGGAGCGCAGCCGCGACCACCACAAGTCACGCAGCAAGGATGGCAGCCGCTCGGAGAAGTCTGTCACCATCAACGCACCGCCAGCAGAACCGCTGCTGGGAGACTCGTCTGTACTGGGGGAGGAGGTCCAGGATGACAACTGGGGCGAGACCACCACGGCCGTCACGGGGACGTCGGAACACAGCCTGTCCCAAGAGGACATTGTCCGGATCACCAAGGACCTGGAGGACAGCGTGGGCCTGGACTGCCGGCGCTACTTTAGCCTGACCCTGGCTGTGGTTCTGGGCCTGCTGGTCTTCCTCACTCCCCTGGCCTTCCTGgctctcccccacctcctctgGCCTGACAAGCTCCTGGTGTGCGGCACGGCCTGCGAGGGCCTCTTTATTTCCGTGGCGTTTAAGCTGTTGATACTGCTGTTGGCCGTTTGGGCGCTGTTCTTCCGGGCTCCGCGCGCCGGCCTTCCCCGGGTGTTTGTGTTCAGAGCGCTGCTGGCCGTGCTGGTGCTGCTGTTCGTCGTGTCCTACTGGCTGTTCTACGGCGTGAGGATACTGGACTCACAGGATGAGAACTACCAGGGCATCGTGCAGTACGCTGTGTCTCTAGTGGACGCTCTGCTCTTCATCCACTACCTGGCCATCGTTCTGCTGGAGCTCAGGCAGCTGCAGCCCGCCTTCTCTGTCTGCGTCACGCGCTCCACCGACGGAGAGACACGCCACTACAACCTGGGCCAGCTCAGTATTCAGCGGGCAGCATTGGCCATCATAGAGAACTACTACAGAGACTTCTCTGTCCACAACCCGGCCCTGCTCACCGCCTCGAAGTCCCGGGCTGCTAAGCACCTGGCCGGCCTCAAGGTGTATAATGTGGATGGCCCTGGGAACAACGCAGCGACCGGATTGGCCCACTCCCAGTCTCGGGCTATGATTGCCGCTGCTGCCCGCCGCCGAGACACCAATCACAACGAGCTGTACTACGAGGAGGCGGAGCACGAGAGACGCGTCCGTAAACGCAAGGCCCGACTGGTGGTGGCGGTAGAGGAGGCCTTCACACACATCAAGCGTatgcaggaggaggagcagaagaAAGCCCCCGGCGACGTGATGGACCCGCGCGAGGCTGCCCAGGCCATCTTCCCCTCCATGGCCCGCTCTCTGCAGAAGTACCTCCGTACCACCAGGCAGCAGCACTGCCACAGCATGGAAAGCATCCAGCAGCACCTGGCCTTCTGCATCACCAACAACATGACGCCCAAGGCCTTCCTGGAGAGTTACCTGACCCCCGGGCCCACCCTGCAGTACGGCCGCGAACGCTGGCTGGCCCGGCAGTGGACTCTGGTCAGCGAGGCGTCGGTCACCAGCGGCCTCAAGGAGGGCGCCATCTTCCTCCTCAAGTGCATAGACTTCAGCCTGGTGGTGACTACCAAAAGGATCCCCTACATCCAGCTTTCAGAGGAGTTCATCGACCCCAAGTCGCACAAGTTCGTCCTGCGGCTACAGTCAGAGACCTCTGTGTAGAACTGGACAACTGTTTTTACCACCACACACCttttttttgttttcaaaatggtTTTATTTTAGGTTTGCGGTTTTATTTGaggatttttttatatattatatatgaatATATGTTACACACCCATTGGAAAATATTGTCCTTTTTATCTATGGTTTACCTGGTTTGAgttaatataaaaaaaatatatacaccgGTGATGAATTTGACTTGtcttgcatgcacacacacacacacagaagattGAACTGAACTCTGTGGAGATGGATCTATAGATGAACAATGTGTGCACACAACTGCATATGTGTCAATGTCTATGAACACCGTTGTTCCACCTCTGAAAGACTGATGCCGAGCTCAAGACGAGGAATTGTTTTAATTCCATGGCTCAAGAGGGGGACATCTCACCGAGGAGTCAAATGACACTACTGTTGCTATGGACATTGCTTCATTCCCCCTCAGCCAAACCACTACAGATGGTGAACTGCCACTATTTAACTTCTGGACAAAATGTATCTTTTAACACAACCGTCTCAGGCCTGTCTGCTGTTCTGAAACTATAGCTACttaatttacttttttttttttttgcgttacATGCACATGTTCTCTACAACTGTATATTGATTATGTATAAACACATTGTGATATAATGTTGTTTAAGTCTGTGTACTGGGTCAATCTCCATCCCATTTCCTTATATCCCGATCTGTGGATTTACAGAGTAAGACATGAATATCAGTAGCCTTCGTTGTTAAACAAAACCCTTGTTTTAGCTGTTTTATAGGTGATTGTTAAATAGATATTCAAATTCAATGCCCATTTATATGATTAACCCCAAGGCTGAAGGCCTTAAATCCCCAAGGGATCTTGCTAAAATATTTTTAGGCCTCAAAGTGTGTACTGTAGTACGGCTTATGCGTACAGCAGCACGTTCCCAGGTGCAATGTCGCAATACAACAGCATGTTATACTGCAGTACATCTTGTCCACaagccagctctctctctctgtaacagaAGGTTATTCTGTACTATGTTATGTTATAAGTACTGCTGTCAACATGGGGGCTCAGAATGGTCCATCCATATCCCAAATGAACAGATACCAATATACACTCATGGCTGGTTTGTAAAGCAGAGCTCTTCAAATGTTTAAAACCCATAGTCGCCCATATTAGGAATCCCATAGGATCCTGATTGCTGATGTAACTCAATATTTCCAGCTTCTGTAATGGATTTTGGAGATGTGCTGCTGTCTCGTTCCACTTTTCAATTTTAAATGGGACGTTCACACTTCCCAGCTTAGTCATATTTTGATAATGAGTCCATTTAGGACCTTATATTTGTTGAAACTTGACAGCTACTTTTTTTTATAAAGCAACACATGCCCCGCATATATCTCTTCTCAGGGTTCAGGCTTTCACATCTATCACACTTACTTTGCAAGATAGAGCACTCCGCGAGAGAAAATGCACAGATACAACTAATGTATGACACTGATTTGGACCACAGCGCAGAACGCAGAACTCTATTCTGCAGCTATTACCATGTAAGGTCTAAGTGGTTAATTAAGCTAATCGCCTCTTGAGATGGTGAGTACGGTACTAGGGGGTGAAGAGGAGCCTCCCTTGTAACTCACCCGTCTGGTTAGTCTTCTATTACCATGTCATCAAGCGAGATATCATGTTGAGCCGTGAATCTGGGGACCTGATAGCTTTGAGGATGAACATAAAAATCCCTAATGACATCAGAATCCTATATTCTCCCCTAGTGAATGTAGGTGGCAGATTGAGATCCATCCAGGATGAGTTGCTTCAGAGGTGATCAGGATCCTATCTACGTAAAACCTCATAAATCCCCATGTAGAATGGACTTCTGGCTTGTAGAGGTCCTCAACGGTATTACAGCTCTGCGTGTCATTCCTAAAAAACCAAACTGCCCGTCAGCGCCACCTGGCAGACAAACCAGAAGGTGTCAGACTTTGGTCTGGCAAGGGGTTACTGTTGATGGGTGCCGACACATTTTCACACATTCACAAACAAACGCATGATGCCCGTGTCCAGTTATAGACAAACCATTTTTAACGATTAGCATGTGGCTCATAAAAGCCACTTGGAAATGCAACTCTATGTTTTCTCGTCATGAAAACAAACATATTTTTATACTTATAGCACGGAGTCTTTTGTACCCATAATTGATGGACTTTGTATGAACCCCAACTCCTGTGACTGTGCCTCTTGTCTTTacactgtatgtatttatgtagccATTCCCTTATCACATGCTCAGCGATCCCTGTATTGACTGCATGTTGACGTTTATTGGGATTAGTCTTGCcttggaggcagaactgagcgatttccactagatgtgccAGCGGAAAAGTCCAAATTTGCTGTATGgcaaaaattcatgaaaacaaaaatgtgcttttttgtTCTTAAAGGTTAGTGTTCGCGGTGTGGTTACGAGCAGGACTTTCCGGCTGTGCCAGGTTGTGACCACTCTGTAGAGCTGCCTCCAGTACACGAGTCTTCCCAATAAATGCTAACCTGCGTATTGACCTCTGTCATGTTTTGCTGGCCTGgtcacagatctgtttgtgctgttactGCCAGGTTCTGCTAACCTGGCAGTAACTGATCTGCGACCAGGCTAAAGGTTAGCCAGGTTGCACCCATACTGTAGAACTCTGCTTGTTACTGACCTGACATCGCATTGTAACCAATGTGTCAATTTCACTATACAACAGGCATTTgtgtaaaataaacatttgtatGAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744897 lncRNA upstream 49895 19858106 ~ 19858708 (+) True G1523896
TU1744895 lncRNA upstream 52548 19855726 ~ 19856055 (+) True G1523894
TU1744872 lncRNA upstream 59765 19848369 ~ 19848838 (+) True G1523871
TU1744871 lncRNA upstream 59811 19848199 ~ 19848792 (+) False G1523871
TU1744771 lncRNA upstream 277088 19630938 ~ 19631515 (+) True G1523783
TU1744961 lncRNA downstream 29126 19983225 ~ 19983481 (+) True G1523959
TU1744964 lncRNA downstream 31623 19985722 ~ 19986153 (+) True G1523962
TU1744996 lncRNA downstream 95803 20049902 ~ 20104851 (+) True G1523994
TU1745000 lncRNA downstream 98670 20052769 ~ 20118213 (+) True G1523997
TU1745039 lncRNA downstream 169749 20123848 ~ 20124587 (+) True G1524032
XM_021571189.2 mRNA upstream 8583 19897030 ~ 19900020 (+) False LOC110495771
NM_001124412.1 mRNA upstream 60759 19844336 ~ 19847844 (+) True tlr22
LOC110495770 mRNA upstream 71724 19832923 ~ 19836879 (+) True LOC110495770
LOC118941119 mRNA upstream 88497 19816649 ~ 19820106 (+) True LOC118941119
LOC118941067 mRNA upstream 95598 19812002 ~ 19813005 (+) True LOC118941067
XM_021571195.2 mRNA downstream 15409 19969508 ~ 19975011 (+) True poglut1
XM_021571196.2 mRNA downstream 20915 19975014 ~ 19982950 (+) False timmdc1
XM_021571197.2 mRNA downstream 20985 19975084 ~ 19982950 (+) True timmdc1
XM_021571201.2 mRNA downstream 38460 19992559 ~ 20047293 (+) False LOC110495777
XM_036952230.1 mRNA downstream 38465 19992564 ~ 20049054 (+) False LOC110495777
TU1744915 other upstream 8584 19897060 ~ 19900019 (+) True LOC110495771
TU1744845 other upstream 80637 19775092 ~ 19827966 (+) True G1523847
TU1744790 other upstream 147583 19758315 ~ 19761020 (+) True LOC110495769
TU1744791 other upstream 154585 19750732 ~ 19754018 (+) False LOC110495769
TU1744679 other upstream 401347 19506392 ~ 19507256 (+) True G1523703
TU1744973 other downstream 38741 19992840 ~ 20010089 (+) False LOC110495777
TU1744968 other downstream 61849 20015948 ~ 20033645 (+) True LOC110495777
TU1744971 other downstream 112155 20066254 ~ 20076312 (+) True LOC110495776
TU1745087 other downstream 252393 20206492 ~ 20235180 (+) False LOC110495784
TU1745162 other downstream 351606 20305705 ~ 20306904 (+) True G1524124

Expression Profile