RNA id: XM_021571193.2


Basic Information

Item Value
RNA id XM_021571193.2
length 2189
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110495773
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19959480 ~ 19967828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCCTCATAAAAAGGCCCCAAAAGTGCAATAGAGAGGGGGTCACTTGCTATTTTATTGTGAGCTTTCCACTCTACCAAAGCTCCCTGGATTCACTTTTGGGGACTTATTTTTTTAACTACAGTGTGAGGCAgtcaagaaagagaaagagagagagagagaaggaaagagagagaacgaggaaggaaaagagagagaggggcagaaagagaactagagagagtgaggaagagagagagaaagagagaatgaaataATACAACCAGAGCTGGAGACTTTAGGGCGAACAACAATTCTACTCTTGcttgttatttatttttacgTTATTTTTCTGTTTCTTTTACTGGTGCAAATTGGTGGCTAGTACTGGCTACTATCCATTGAAGTCTCAAGGGTTATAGTTCTGTATAGTTTCTGCTGCTTCTTCCAGTTCCTACTCATTGTCCATTAGTGGACATTTCCCTCTAAGAAAGATGCAGCTCTTCTGGCTGTCTCTGTTGCCCTGTCTGTACGTGACCTCTCTGTGCACTGCAGAGCAGGGACTGGAGTTCCCCAGCTTTGACGGGAAGGACCGCGTTCTGCACATCAACGAACGCAACTACAAGAAGGCTCTGAAGAGGTTTGACATGCTGTGCCTACTCTACCATGAACCGCAACCGGCTCACAAAGGCAGGCAGAAGCAGCTTCAGATGACTGAGCTTGTGCTGGAgCTGACTGCACAGGTCCTGGAGGACAAGGACATTGGCTTTGGGATGGTCGACTCCCAGAAGGACGCCAAAGTTGCCAAGAAACTGGgtttggaggaggagggcagTCTGTACATCTTCAAGGATGACCGTGTGATTGAGTTTGACGGAGAATTCTCAGCAGACACCCTGGTGGAATTCCTGCTGGATGTGTTGGAGGACCCAGTGGAGCTCATCAGTAACCCTATGGAACTGAGGGCCTttgagaggatggaggaagacaTACGCCTCATTGGTTACTTCAAGGGAGAGGACTCATACTACAAGGCGTTCCAGGAGGCCTCAGAGCGGTTTCAGCCCTACATCAAGTTCTTCGCCACATTCGACAAAGCTACGGCGAAGCACCTTTCTCTGAAGATGAACGAGGTGAACTTCTATGAGCCCTTCATGGAGGAACCAGCCATCCTCCCTGGCAGGCAACTCTCAGAGATGGAGATAGTGGAGTTTGTCCACCAACACAAAAGGGCGACTCTGAGAAAGTTGCGTGCAGAGGACATGTTTGAGACGTGGGAGGATGACTTGGATGGGATCCACATTGTAGCCTTTGCTGAGGAGGAAGACCCTGATGGTTATGAGTTCCTGGAGATCCTGAAAGACGTGGCCAGAGACAACACCAACAACCCTGAGCTCAGTATAGTGTGGATAGACCCTGATGACTTCCCACTGCTGACCACATACTGGGAGAAGACCTTCAAGGTGAACCTGTTTAAGCCTCAGATTGGAGTTGTGAACGTGACAGACGCGGACAGTGTCTGGCTGGACATGTCCAACGATGAAGACCTGCCCACAGCTGAGGAACTGGAGGACTGGATAGAAGACGTGCTGTCTGGGAAGGTCAACACTGAGGATGACGATGATGTGAAGGATGATTATGATTATGACGGGGTTGACAGGGAGGATAGGCACCATGGTGACGATCACGAGGACCATGGAGACTATGGCGACCATGATGACAGTGGCTAACCTGCAGTCCAGCAGAGATTTCCTGGGTTATGTTTTATTGAACAGTCTGGTATTTTATATTGTATTTTCATGGAAATTGTAGGGTGAAATGATAGTTGCATGGGAATGATCTAATAGTAAACGCTTGGTTTCTTTGGGATGTATTTAAATAAGTGCACGTATAGCCTTTACTGCTTGACACCAGGTAGTTAGTTATCTGTAGTGTTCAGTTCTTTGTACTAGAAGCACTAAAATAACCAATTGTTACCATGCAATTTCTCAGACCATAGCAAGTAAATACTTAATTAGACTGTGAAATAACCTGTAACATCAGTACATCGTATAATTACTTTTTacattttctaaataaaagctaAAGCTTCTTTATGGTGGAGGATTGTATAAGTTAAAGGTTCTTATGAGACCAGGTTGTGTTGTCTCGATTCCATAAATACTTGATTGTATATGTGATACTGTATGAATAAATGTAATGTAACCTAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23445 CASQ2; calsequestrin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745976 lncRNA downstream 41724 19917375 ~ 19917756 (-) True G1524860
TU1745949 lncRNA downstream 78617 19880614 ~ 19880863 (-) True G1524838
TU1745936 lncRNA downstream 93564 19865652 ~ 19865916 (-) True G1524831
TU1745929 lncRNA downstream 105280 19853920 ~ 19854200 (-) True G1524824
TU1745928 lncRNA downstream 105822 19853360 ~ 19853658 (-) True G1524823
TU1746009 lncRNA upstream 5307 19973135 ~ 19974915 (-) True G1524893
TU1746016 lncRNA upstream 15815 19983643 ~ 19984222 (-) True G1524900
TU1746066 lncRNA upstream 82765 20050593 ~ 20051752 (-) True LOC110497091
TU1746113 lncRNA upstream 135475 20103303 ~ 20104396 (-) True G1524985
TU1746142 lncRNA upstream 199818 20167646 ~ 20167871 (-) True G1525012
XM_036951384.1 mRNA downstream 95246 19860204 ~ 19864234 (-) True LOC118941046
XM_021571183.2 mRNA downstream 166026 19762474 ~ 19793454 (-) False LOC110495768
XM_021571184.2 mRNA downstream 166026 19762474 ~ 19793454 (-) True LOC110495768
XM_021571185.2 mRNA downstream 187002 19762474 ~ 19772478 (-) False LOC110495768
trnan-guu-14 mRNA downstream 282748 19676659 ~ 19676732 (-) True trnan-guu-14
LOC110497091 mRNA upstream 82612 20050440 ~ 20058151 (-) False LOC110497091
XM_021571204.2 mRNA upstream 145478 20113306 ~ 20140842 (-) True LOC110495778
XM_021571211.2 mRNA upstream 210773 20178601 ~ 20190522 (-) False LOC110495781
XM_021571209.2 mRNA upstream 210773 20178601 ~ 20190856 (-) False LOC110495781
XM_021571210.2 mRNA upstream 210773 20178601 ~ 20190856 (-) False LOC110495781
TU1745849 other downstream 229412 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 233949 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 382380 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 795354 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 1210085 18749125 ~ 18749395 (-) True G1524311
TU1746271 other upstream 603268 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2294228 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 2904217 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 3191730 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 3513712 23481540 ~ 23541256 (-) True LOC110495851

Expression Profile