RNA id: XM_021571200.2


Basic Information

Item Value
RNA id XM_021571200.2
length 5210
RNA type mRNA
GC content 0.49
exon number 29
gene id LOC110495777
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19992559 ~ 20049054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaagacggctcataatggctggaacggagcaaatggaatggcatcaaaccatatgtttgatgtatttgaaacATTACCCTTTTCCGCTCCAACCATTACCACGAACACGTCCTCCCCAATTCAAGTGGCACCAACCTTCTGtgagttacatgacctacagcatggtcaaggaAGTTAATGTTTCCGTCATTTTCGAATAACTAAACATATTAATGGTGAATTCGACTGGACACGGTAGACTCCTCCTACTTTTTATTTGCACATGTTGGCGTGGTGTCATTGCACAATGGAACAACTGAAGAAAGATGTTAAATGTAATCCATCAACAACAGCCAATTTCTTTTCACGGATGTTTTTCTGTTGGGTAACCCCTTTATTCAGTATTGGAAATAAGCGGAGGCTAGAGGAAGATGACATGTACCAAGTGCTTCCCGATGATGCTTCTCAGGGCCTGGGAGAGGAACTACAGAGATATTGGGATAAGGAGGTTCGAATGGCTGCCAAGGAACTGCGGATGCCCAAACTCACCAAAGCCATCGTGAAGTGCTATGGGAAACCCTACGCAGTGCTGGGGATCTTTAGTTTCACCGTAGAGGTGGTTAAGGTGATCCAGCCAGTGTTCTTGGGAAAGCTGATCCAGTACTTTGAGAAGTATGATCCTGATAATATGGATGCGCTGTATGAGGCCTTTGGCTACGCTGCTGGTATCTCTCTGTCCACTGTTGCGCTGACTGTTCTCCAAATTCATTATTACTACCACGTCCTGAGGACCGGCATGAAGATACGAGTGGCCATGTGTCACATGATCTACAATAAGGCCCTGTGTCTCAGCAGTGCAGCGATGGGAAGAACAACCACAGGCCAAATAGTGAACCTGCTATCCAACGATGTCAACAGGTTTGATGAGGTGACCACCAATCTGCACTACCTCTGGATAGCACCTCTGCAGGCTGTGGTGGTTATCAGCCTCCTGTGGTATGAGATTGGCCCGTCGTGCCTGGCAGGCGTGGCTGTCCTTTTGTTCCTCATGCCACTACAGACCATGTTTGGAAAACTCTTCGGCTCCCTCAGGAGTAAAACTGCTGTCCTCACAGACAGTAGAATACGCACCATGAATGAAGTGGTGTCTGGAATCAGGATCATCAAAATGTATGCCTGGGAAAAGCCCTTCTCAGCACTGGTCAATGAAGTCCGAAGGGAAGAGATCTCCAAGATCATGTCAAGCTCCTACCTGCGAGGCCTCAACATGGTCTCCTTCTTTGCGGCCAGTAAGATCATAGTCTTCATCACCTTCGCCGTCTACGTCCTCCTGGGGAACACCATCTCAGCCAGCCGGGTGTTTGTGGCAGTGTCTCTGTATGGTGTCATCAAGATCACAGTGACCCTCTTCTTCCCACAGGCCATTGAGAAGGTGTTCGAGACCATCATCAGTATCCGCAGGATCAAGAATTTCCTTCTGTTGGATGAGATTGAGAGACCCAACATAAGATTCACCTTGGAGGAAAAGAAAGACGCCTCTGTTGAGATCAAGGACTTAATTTGCTACTGGGACAAGtgtCTGGACGCCCCATCTCTCCAGAACCTGTCACTCACAGTGAAGTCGGAGCAGCTCGTTGCTGTCATTGGACCTGTGGGGTCTggaaagTCCTCCCTGCTCAGTGCCATTCTGGGGGAGCTGCCTCACGACAAGGGCGTGTTGAGGGTCAAAGGTCAGCTGACCTACGCCTCCCAGCAGCCCTGGGTGTTCCCTGGAACCATCCGCAGCAACATCTTGTTTGGCAAAGAGCTCCATCCTCAGAAGTATGAGAAGGTCCTGAGAGCCTGCGCCCTCAAGAGGGACATGGAGCTGCTGCCAGACGGGGACCTGACattgataggggacagaggagCAACCCTCAGTGGGGGACAGAAAGCTAGAGTGAACCTGGCCCGGGCTGTGTACCAGGATGCTGACATCTACCTGCTGGACGACCCTCTAAGTGCTGTGGATGCTGAGGTCGGGAGACACCTGTTTGAACAgTGTATCTGTGGTATTCTGAAGAATAAGCCCCGCATCCTGGTCACCCACCAGTTGCAGTACCTCCAAGCAGCCAACCAGATCCTCGTCCTCAAGGAGggtcacGTGGTAGCGAGGGGGACATACTCCGAGCTGCAGCACTCTGGGGTTGACTTCACCTCCCTGctgaagagggatgaggaggaggagccaCAAACCAACAACAATCACTCAGTGGTCAAACACGCCTTTTCCCAGAACTCAATATCctcccacacctcctccatgcacTCTGTTAAAGATGGAGCTGAACAGCTTCCGgaGGAGCTTGTCCAGACAGTAGCAGAGGAGAGCCGATCGGAGGGCAACATCGGCGCCAGCCTATACTTCAAGTACTTAAACGCAGGAGCCAGCATCCTGGTTATGCTGGGCACAGTCCTCCTCAGTCTCATCGCGGAGGTAGCGTAtgttcttcaggattggtggctGGCTTATTGGGCAGGAGAGCAGGAGAAACTCAATATTAACAGCACTATGATTGTCCAAAATGGCCTCAACATCACTCAAGAATTGGACCTCCGTTTCTACATGGGTATTTATGCAGGTTTGACTCTGGCCTCAGTCATCTTTGGCTTTGCCAGGAGTCTGTTGATGTTCAATGTGCTGGTGAAAGCTGCTCAGTCTCTGCACAACCGCATGTTCAACTCTATCCTCCGGACGCCTGTACGCTTCTTTGACATCAACCCAATTGGAAGAATTCTCAACAGGTTCTCTAAGGACATTGGCCAGCTGGATTCCATGTTACCTAATACCTTTGTTGACTTCAGTCAGTCGATCCTGCAGAACAtcggtgtagtggtggtggcagcGGCAGTTATGCCCTGGATCCTCATTCCTGTCGTTCCTCTACTCATCATATTCCTGTTCCTGAGACGCTACTTCCTGCAGACGTCACGGGACGTCAAACGCCTGGAGTCCACCACTCAGAGTCCCGTCTTCTCCCACCTGTCCTCGTCCCTCCAAGGTCTGTGGACGATCCGAGCCTTCAGAGCCGAGGAGAGATTCCAGAACACCTTTGACACTTATCAGGATCTGCACACAGAGTCCTGGTTCCTGTTCCTGGTCACTTCTCGCTGGTTCGCTCTCCGACTGGATGGAATCTGCGCGGCCTTTGTCACTGTCACCGCCTTCGGCTGCCTATTCCTCAGAGATGGGCTGGAGGCAGGAGCTGTGGGTTTGGTGTTGTCCTACGCTGTCACCCTTCTTGGGAACTTCCAATGGACCATTCGTCAGAGTGCGGAGATGGAGAACATGATGACATCAGTAGAGAGGGTGGTGGAGTACTCAGAGCTAGAGAGTGAAGCACCCTGGGAAACCCAGAAGCGTCCTCCTCCTGAGTGGCCGAGCCAAGGCCTAATCACCTTTGACTGGGTGAACTTCTCCTACAGCTCAGATGGACCTGTGGTCCTGAAGGACATTAAGGCCATGTTCAGGCCCAAAGAGAAGGTTGGCATCGTGGGCAGGACGGGTGCGGGGAAAAGCTCCCTGGCATCGGCCCTCTTCCGCCTGGCAGAGCCAGAGGGCAGGATCTACATCGATGGAGTTCTGACCTCCGAGATTGGCCTCCATGACCTGCGCCAGAAGATGTCCATCATACCTCAGGACCCAGTGCTTTTCACGGGCACCATGAGGAAGAACCTGGACCCTTTCCACCAGCACACAGACGAGGACCTGTGGAACGCTCTCCAAGAGGTCCAGCTGAAGTCTGTTGTGGAGGAGCTGCCCAATAAGATGGAGACGGTTCTGGCTGAGTCGGGCTCCAACTTCAGTGTGGGTCAGAGGCAGCTGGTCTGTCTGGCCCGAGCCATCCTGAGGAAGAACCGCATCCTCATCATCGACGAGGCCACGGCCAACGTGGACCCCAGAACAGACGAGTTGATCCAGAAGACAATACGAGACAAATTCAGGGAGTGCACCGTGCTCACCATCGCCCACCGCCTCAACACCATCATAGACAGCGACCGCATTCTGGTGCTAGGCGCTGGTATGATCCAGGAGTTTGACGAGCCGTACGTCCTGCTTCAGAACCAGGAAAGTGCCCTCTACAGGACAGTCCAGCAGATGGGCAAGGCTGAGGCAGCTTCCCTGCTGGAATCAGCCAAACAGGCTTATATGAACAACGGCAACAGCCATGGCCTTTGAGATGGTTGTGTGACGGTGCAGGGACTTGACGAGCAGAAAGAGAGATGTTATATCTGcccaatttatatatttttttccactaattaGTCTTTTAactaatcacatcagatcttttcacatcactctggctgtgtaaatgcagccagaGTAATTTTAATGGTAAGTTGTTGATTACTTATTTGCATGCAAAATCAGGAAAGATTTATGGAACTGACTTTAATATGCAGTGCTTTATcagctttttttttatttaaataaggAAGCAAAATGTATTTCCTTATTGACACTGATGTGTGTTGCATCTTTAATACTACTTTCATTGACAATCATAAGAATAGTATTACAACAATGGAAGTAGCATTGCAATGCAATACTTTGTGCCTCAATCTTTTACTATTTGAACTTCTGCTACTCCTATTGATTTATTCTACTGCACAGTATCCTGACCTCATGCTGCACTGTGCAATGGAACTAATTGGCGTGTGTATTCATATACTATACGTGCAATAGAAAATTACACTTCACCATTGTACTCACATGAAAAGTCATGCTGTAATTATGCTATAAGGGATTCAGGGATTTTCATGAGGATTAACTTGACCAAAGTGAGTAACCCATGTATGTCTCACGTTGTTTGCATGAGTGAAAGCTGTGTGATGGTTGTAAGGACAATCTAGATCATTTACAAGCAGGAATACCTACCCGTCAATGTGAAAATGCATTGAACTTTAAACTTATCTTGAACTTTGACTTATTCCCTAATGGGACAGTATAGAGAGACCTTGACCttagctttaaaaaaatataattttgattCCATTGGTTTTGCAGTGGATGTAAAATGTAATTGTTTCCCCAAAGGTGGTGTTATTTTTAAATGTACCTATAGCAACATTGTACCTCCTGTTTTTTACATATTTCAGATATATTGATGTTCCTTACATAGTAAAGTTTGTTTGTAAAATGATATTGTGAAATGTAACCTTAATTTTAATAAACTGTTATTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744964 lncRNA upstream 6414 19985722 ~ 19986153 (+) True G1523962
TU1744961 lncRNA upstream 9086 19983225 ~ 19983481 (+) True G1523959
TU1744924 lncRNA upstream 74802 19908900 ~ 19917765 (+) True LOC110495772
TU1744897 lncRNA upstream 133859 19858106 ~ 19858708 (+) True G1523896
TU1744895 lncRNA upstream 136512 19855726 ~ 19856055 (+) True G1523894
TU1744996 lncRNA downstream 848 20049902 ~ 20104851 (+) True G1523994
TU1745000 lncRNA downstream 3715 20052769 ~ 20118213 (+) True G1523997
TU1745039 lncRNA downstream 74794 20123848 ~ 20124587 (+) True G1524032
TU1745041 lncRNA downstream 76014 20125068 ~ 20126928 (+) True G1524034
TU1745071 lncRNA downstream 143281 20192335 ~ 20192563 (+) True G1524059
XM_021571196.2 mRNA upstream 9617 19975014 ~ 19982950 (+) False timmdc1
XM_021571197.2 mRNA upstream 9617 19975084 ~ 19982950 (+) True timmdc1
XM_021571195.2 mRNA upstream 17556 19969508 ~ 19975011 (+) True poglut1
XM_036952228.1 mRNA upstream 38468 19909023 ~ 19954099 (+) False LOC110495772
XM_036952233.1 mRNA downstream 16911 20065965 ~ 20110618 (+) False LOC110495776
XM_021571205.2 mRNA downstream 113731 20162785 ~ 20164464 (+) True LOC110495779
XM_036951385.1 mRNA downstream 118179 20167233 ~ 20170345 (+) True si:busm1-52i16.2
XM_021571212.2 mRNA downstream 157430 20206484 ~ 20236753 (+) False LOC110495784
LOC110497092 mRNA downstream 195300 20244354 ~ 20245888 (+) True LOC110497092
TU1744915 other upstream 92548 19897060 ~ 19900019 (+) True LOC110495771
TU1744845 other upstream 164601 19775092 ~ 19827966 (+) True G1523847
TU1744790 other upstream 231547 19758315 ~ 19761020 (+) True LOC110495769
TU1744791 other upstream 238549 19750732 ~ 19754018 (+) False LOC110495769
TU1744679 other upstream 485311 19506392 ~ 19507256 (+) True G1523703
TU1744971 other downstream 17200 20066254 ~ 20076312 (+) True LOC110495776
TU1745087 other downstream 157438 20206492 ~ 20235180 (+) False LOC110495784
TU1745162 other downstream 256651 20305705 ~ 20306904 (+) True G1524124
TU1745224 other downstream 424306 20473360 ~ 20483713 (+) True G1524181
TU1746485 other downstream 707637 20756691 ~ 20757412 (+) True G1525320

Expression Profile