RNA id: XM_021571211.2


Basic Information

Item Value
RNA id XM_021571211.2
length 3200
RNA type mRNA
GC content 0.52
exon number 18
gene id LOC110495781
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20178601 ~ 20192178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGATACCTGCAGAAGCCATTTTACAATAACGTCTATTACCCATACCAGCCAGAGACCCAAGGGACCCACTCATCAGCTGGGATCCCCTCCCTCCTAAACTCCCCCCTTAGCCAGCCCTCCTCCAGCGGCCGGTGTcctccagcaccaccaccaccagccatGTCTGCCTCTACATCCACCACCATCCCGCCTTTCAAATTCCGGCCTCGGCGCGAGAGCGTTGACTGGCGCCGGATCAGCGCGGTGGACGTGGACCTGGTGGCCAGCGAGCTGGACTTCCAGACCCTGCAGGAGCACATCACAGGGGTGACCTTCTGCAACGTGGAGGGAGAGCGTTGTGTCCGCTGCCAGAGCCCCGTGGACCCAGCGCTGCTCAAGCTCTTCCGCCTGGCCCAGCTGACAGTGGAGTACCTGCTGCACTCCCAGGAGTACTTGACCCTGAGCCTGGGGGCGGCCGAGGAGAGGCTGCAGACCCAGGCCCGCGAGCACCAGCAGCTCCTGGCCCAGCAGCAGAAGCAGGCGGACCAGGCCAAGGTACTGAAGACGGAGCTGAAGCAGAGGAAGAAAATCATTGCCCTCAACCAGCAGGCTATGATCAACATGACCAATTGCCATAAGTGTCAACATTGTGATAAAGCCTTCATGAATTCCTCCTTTCTCCAGAATCATATGCAACGTCGCCATGCAGACGAGTACGACAGCCAGTTAAGGACAGGCAACCAGAGGAAAGTGAAGAGCATTGCAGATGAAGAGGAGATCAGTCGGCTGAAAGGGCAGCTGAGTTACACCACATCTGAGCTGGAGTCACAGAGGCAAGCCCTCTTGGCCAAAGCCTCTCAGGAAAGAGACCAGCAGTCCATGCACCAGGATTTGATGAGAAAGCtagagagatggaaggaagaaGAACACAGGAAGATAGAGGAGATGAGAGACGGTTTCCGGAGGGAGATAGAGATGCTTCACAACAGGAACGCTCTTCTTCAACAAAAAGTGGATCTCAAGATGACCACTCCTGAGAGGAGGCCCAGTCCTGCTCCCCAGCAGACTGACCAAGACATGGATGAAAAAAGCAAGATTGTGGTCCAGAAGATGGATCAGAAACACAAGAAACTGGAAGAAAGGTTTacatcaaaaattgaaaaaatgaAGGCTAACCATGAGAGCGAAAAGAATCAGTGGCAGGATCAGTTTAGCAGGTTGGAGTCGTCTGTGGTGGAGTGGCAGCAGCAGAGCCAGAGGCAAAAGGAGGAGAGTGACCAGCGGCTTCAGGAGCGGGACCTAATCATCCTCTCTCAGCGAGAACAGATAAAGCATATGTCCTCAAATCCACCTTCTAAAGTAGTTGAAGTTCCAGTGATCATAACAGCCACAGCGCCAGAGCCTAAACCAAAGAGAGTAGTGAAGGAGCAGCCTCCCTCTGCTCCTAAACTGGATCCTATAGAGGAGCTGTCTGAGGAGGACAAAGACTCGTCCAGCGTGTCTGAGAAGAAGCCAGTTGTTGTAATGAAGCAGCCGTCTTCTGTGACCAGTGTCCTGAGGAAGAACCCCAACATCAAGAGGGAGCTGCGTCCCGCCCTGGAGCAGGCACTCCTAGAGAAGCTTGAGTCCCTGGGAGTCAAACCGGGTCTGAGGGGACTCGGAGGCAGCGAGTACAGTGATCTCATGGCTAAGTTGCGctcggagagagagagtacggcgAAGGACATTCCGGACTATTGGCGTCACCGTGAGGATGTGGCTCTCACACTGCGTCTGAGACTGAAGGACAAGAGGACGGAGAGTGACTCTGCCCCCGAGCAGCGGGTCAAACCAAAACAACCCACTCAAGTGACCCAGGCCAGACAGCTGTCCAGCAGCCTTTCCTCCAAGGTGACCCAAGTGATGTCAGGACCAACAGCAGCGCCTGCCAAACAGCTGCAAACGACCCCCCAGCCTGCCCCCCGGACCCTTACCACTACCCTGCCCAAGACCACTCCCAAGACCCCTCCCTTCAGCTCAGACGATGAGTCATcatcagaggaggaagaggaggaggagccacCTCAGAAACCCAGACAGGAGCAGAGAGTCCCTCATCACAGAGCCTCCCAGCCCAAACCAACACAACCCAAGATCACCCCCCATCACAAACTCACCCAGTCCAAACCGGTCCAGGATAGATCAAGCCAGCCCAAACAGGTCCAGCCCATTACCACCCAGGCTCAGCCATATAAACCCCAGCAGCCCAGAAGCACTGCGGTCAACACGACCAAAACAGCAGTCACTGTggtagagagcgagggagagtggACAGAGGGGAGTGAGTTGGAGGAGGTCGACCCACAACAGCTCCAGAACTACAAAGACCAGAATGGGAACGTACAGAAGACTACAAACAATAACCTAGTCAGGGACTTGACTAAGAGCCTGGAGAAGCAGCTTGCAGACAGAGGACCAAAGAAGCCACTAGGGGGAGTGAGCATCTTACCAGAGAGTAAAGACAAAGACGTTGTACGGGAACTCAAGTATACAAACGAGGATGATGAGGATGACTGGGATATCTCCTCGTTGGATGACCTATCGGTACCTGCCCCCGTGGGCAAGCCCACCGCCCCTGTGAGGAAGAGCCTGGATTCAGACAGCACTACCAGTGTCTGGGGAACATCCACCGGGAAGGGGCAGAAAACAGGTTTGAATGAAGCAGGAACCGGCAGCACTCTGAAGAGCAGCCTGGTCTCTGTCAGCGACTGGAGTGACGATGATATATAGTCATATGGAGGGTTTACACTTCTACAATGATAAAACTCAATATGACGCCCATAGGAATTCTTTGGAAGGCAAATATACTTCTACATGATTTACCGATACTGTTAGAATAATAGTTGCATGTAGAAGAGACTTAACTAAGAGATCCTCTGTTCAGGACACAGTGTATCTCTTGAGATATACACCTATGACAGTGGTAGCCATCTGCCTTGTGGCAGTTttcagtgtttttattttatatacagATTATATATTAGCTACAGGGAATTGTCACCTTAGAGGTTTTATGAAATGTGATATTGCACTCCATGTGAGGTACTTGTATGATTTGTGTCAAAACAATTTACATGAAATTTGTAAGACATTTGAATGTCCAATGTAtgaaaaaaaaattttttttgtaTATAAAATATTTATACACGCTAGACAAgcaataaaacttttttttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746142 lncRNA downstream 10730 20167646 ~ 20167871 (-) True G1525012
TU1746113 lncRNA downstream 74205 20103303 ~ 20104396 (-) True G1524985
TU1746066 lncRNA downstream 126849 20050593 ~ 20051752 (-) True LOC110497091
TU1746016 lncRNA downstream 194379 19983643 ~ 19984222 (-) True G1524900
TU1746009 lncRNA downstream 203686 19973135 ~ 19974915 (-) True G1524893
TU1746159 lncRNA upstream 5287 20195809 ~ 20196014 (-) True G1525022
TU1746208 lncRNA upstream 59885 20250407 ~ 20250654 (-) True G1525057
TU1746210 lncRNA upstream 75645 20266167 ~ 20266455 (-) True G1525059
TU1746211 lncRNA upstream 76725 20267247 ~ 20267735 (-) False G1525060
TU1746213 lncRNA upstream 76792 20267314 ~ 20267735 (-) True G1525060
XM_021571204.2 mRNA downstream 37759 20113306 ~ 20140842 (-) True LOC110495778
LOC110497091 mRNA downstream 120450 20050440 ~ 20058151 (-) False LOC110497091
XM_021571193.2 mRNA downstream 210773 19959480 ~ 19967828 (-) True LOC110495773
XM_036951384.1 mRNA downstream 314367 19860204 ~ 19864234 (-) True LOC118941046
XM_021571183.2 mRNA downstream 385147 19762474 ~ 19793454 (-) False LOC110495768
XM_021571213.2 mRNA upstream 49390 20239912 ~ 20248333 (-) True LOC110495785
XM_021571215.2 mRNA upstream 60752 20251274 ~ 20255220 (-) True LOC110495786
XM_036952237.1 mRNA upstream 68645 20259167 ~ 20286164 (-) False LOC110495787
XM_036952236.1 mRNA upstream 68645 20259167 ~ 20290820 (-) True LOC110495787
XM_021571218.2 mRNA upstream 114165 20304687 ~ 20309450 (-) True LOC110495789
TU1745849 other downstream 448533 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 453070 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 601501 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1014475 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 1429206 18749125 ~ 18749395 (-) True G1524311
TU1746271 other upstream 380574 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2071534 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 2681523 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2969036 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 3291018 23481540 ~ 23541256 (-) True LOC110495851

Expression Profile