RNA id: TU1745087


Basic Information

Item Value
RNA id TU1745087
length 1538
RNA type TUCP
GC content 0.51
exon number 2
gene id LOC110495784
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20206484 ~ 20236753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTGAAGAGCCAGCCTTAAGCGACACAAAAGTATTATTTAAAAACATTGTCGTGGTGACGCAAAGGTTTAAAATGAACAGTGAACCGGTGGCTATAGAGAGATGCATGGGTAGTGCGTGTGCACCGGGTGGTTATGCTACTAATGACAGCGTGATGCATTTATGAGAGCTTGCAGTCGCCGCCTCCGGACAGAGCCGTTGTCGAAGAAGATGCTGAATCAGCTGCGCGCTCGTGAGATAGACTACCCCGGGTAGGCTATGTCTGTTTTTCAAATTTCACAAATGTCTCCTTTGCTTCTGACAATAGAAGACGATACATTGGCATAGCGTTgggaatagttttttttttttttttacattttgctgCTGGAAATAAATAAGCTGCCTGTCTAGAGAGATGTTCATCGCTCCAAAGGAGACATCAAGTTTGACAACTGTAACCATCTAGGCTACGATGAAGCAGGGTGCACGAGGAGTTAGAGCATTTGGTTTGGCTGGAGACTTTATGTTACCGCTTATATCAATGGCATGACTATTTCACCAAGCACAATGGAGGATAAATCCAACAAACTCATTTTGATTCCGATACTGGCCGTGGTCTTCTTGATGATAGGCTATCAGTACATTTGTCCAGCCGGCAGTAACTCTTGTCGCTTCCTAACTGGGGACAAGTTGAGTGGAATGTTCCGCCAATATCACTCGGGGGACGACATTTACGCGTACCAAGAAGGGCTGGAGTCGGAGGGTTCCTCAAAAACTCTGTCCAAATTCAATTTTACTGACCGAGACCTTGAGCGACACGTGGATTTCAACATCAAAGGAGATGACGTTATAGTGTTCCTCCACATCCAGAAGACCGGTGGGACTACTTTCGGACGGCACCTTGTCCGAAACATTCACCTCGAACAGCCCTGTGATTGTATGCCAGGACAGAAGAAATGTACCTGTCACCGCCCGGGCAAAGCGGAGTCCTGGCTTTTCTCTAGGTTCTCTACTGGCTGGAGTTGTGGTCTACATGCGGACTGGACCGAGCTGACTAACTGCGTGCCTGTAGTGATGAACAAGAAAGACAAGAAGGATGCTCAGAGGGACCGACGGAACTTCTACTACATCACCATGCTAAGGGACCCGGTCTCCCGCTACCTGAGCGAGTGGAAGCACGTGCAGCGTGGAGCCACCTGGAAGACCGCCCTGCACATGTGTGACGGCCGCTCTCCTACCCAGGACGAACTGCCCGCCTGCTACAGTGGCAACGACTGGACCGGGGTCACGCTGACCAACTTCATGGACTGCCCTTCCAACCTGGCCAACAACCGGCAGGTCCGCATGCTGGCCGACCTCAGCCTGGTGGGCTGCTACAACGTCTCCACCATCGGCGCCGAACGGGAGCGCGGCCGTGTCCTACTAGCCAGTGCCAAGAACAACCTCCGCAACATGGCCTTCTTCGGCCTGACCGAGTTCCAGCGCAAGACGCAGTACCTGTTTGAGCGGACGTTCGGCCTGCGCTTCATCCAGGCTTTCACGCAGATCAACAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745071 lncRNA upstream 13929 20192335 ~ 20192563 (+) True G1524059
TU1745041 lncRNA upstream 79564 20125068 ~ 20126928 (+) True G1524034
TU1745039 lncRNA upstream 81905 20123848 ~ 20124587 (+) True G1524032
TU1745000 lncRNA upstream 88279 20052769 ~ 20118213 (+) True G1523997
TU1744996 lncRNA upstream 101641 20049902 ~ 20104851 (+) True G1523994
TU1745088 lncRNA downstream 297 20235477 ~ 20236743 (+) True LOC110495784
TU1745124 lncRNA downstream 15098 20250278 ~ 20250488 (+) True G1524092
TU1745129 lncRNA downstream 24007 20259187 ~ 20260077 (+) True G1524097
TU1745130 lncRNA downstream 25524 20260704 ~ 20260919 (+) True G1524098
TU1745131 lncRNA downstream 26251 20261431 ~ 20261658 (+) True G1524099
XM_036951385.1 mRNA upstream 36147 20167233 ~ 20170345 (+) True si:busm1-52i16.2
XM_021571205.2 mRNA upstream 42028 20162785 ~ 20164464 (+) True LOC110495779
XM_036952233.1 mRNA upstream 95874 20065965 ~ 20110618 (+) False LOC110495776
XM_036952230.1 mRNA upstream 157438 19992564 ~ 20049054 (+) False LOC110495777
LOC110497092 mRNA downstream 9174 20244354 ~ 20245888 (+) True LOC110497092
XM_021571217.2 mRNA downstream 60837 20296017 ~ 20302100 (+) True LOC110495788
LOC110495791 mRNA downstream 78357 20313537 ~ 20328610 (+) False LOC110495791
XM_021571226.2 mRNA downstream 292499 20527679 ~ 20552117 (+) False LOC110495794
XM_021571231.2 mRNA downstream 292500 20527680 ~ 20552117 (+) True LOC110495794
TU1744971 other upstream 130180 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 172847 20015948 ~ 20033645 (+) True LOC110495777
TU1744973 other upstream 196403 19992840 ~ 20010089 (+) False LOC110495777
TU1744915 other upstream 306473 19897060 ~ 19900019 (+) True LOC110495771
TU1744845 other upstream 378526 19775092 ~ 19827966 (+) True G1523847
TU1745162 other downstream 70525 20305705 ~ 20306904 (+) True G1524124
TU1745224 other downstream 238180 20473360 ~ 20483713 (+) True G1524181
TU1746485 other downstream 521511 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 2364233 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 2364317 22599497 ~ 22611452 (+) True LOC110497098

Expression Profile