RNA id: XM_036952237.1


Basic Information

Item Value
RNA id XM_036952237.1
length 4032
RNA type mRNA
GC content 0.54
exon number 34
gene id LOC110495787
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20259167 ~ 20290820 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agctggaaagtgggctggaaagtgagctacGTTTaagggatctacgtgtttgagagtgtgagttggaagcagacctTACAACTCCTGCCTAAACTCTCCTGAAATGAGTAACTTGAACAGGTTAGATGACCAACCCCATATCACTGGGATAATCCAAAATGCACCTAAACAGACAGAGTTGGCTGATGAGGGGTGTCCTCTGGCCCTGAAGTGTGCGTGTgacaagggagagaggggaccCATTGGCCTCCAGGGCAAGAAGGGGAATTCTGGAGATGATGGTAACCCAGGTGTTAAAGGATCGAAGGGTGAGAGCGGGCTCAGTGGACTTCCTGGTCGAAATGGGGAAGAGGGCAAGCCGGGCTACAAAGGAGAGCAGGGGGAGAGTGGAGAATGTGGCACACCTGGAATCAAAGGAGACAGGGGGCCTGAGGGGCCAGTTGGCACCAGGGGAAACAGAGGGCTACAGGGGTTACCTGGTCCAAATGGCGATGCCGGGCCTGAGGGTCTCATAGGGAAAAAAGGTGAGCGGGGACTTTCTGGGCCACCTGGAATACAAGGAGAAACTGGGATCGGGCTTCCTGGACACAAGGGTGATGTGGGGTTCCAGGGACGACTGGGGCCTCCGGGACCACCTGGCTTAGGGGAACCTGGACTACCGGGGCCTCAAGGGCCACAGGGCGTCCAAGGAGAGAAGGGTCCTATAGGAGAAGGCTTTGCCGGGCCAAAGGGGGACCGGGGCCTGGAGGGGCCGAGGGGACCTAGAGGACAGCCCGGCGCTGGACTGAAAGGAGACAAGGGTGGCTTTGGCCCTCCAGGTTTTCCAGGGCCTGTCGGCCTGCCAGGCCTGGGCATTCAGGGGGAGAAGGGTATAGAGGGGCCACGGGGGCCACCAGGGGGCAGGGGCCCACAAGGAGATGGATATCCAGGGCCCAAGGGTGACCAGGGCTTACCAGGGGAGCTTGGttcaacaggagagaggggggctgGCGAACCTGGGGATAAGGGTGAGCCAGGAGCGTCAGGATTGGCTGGTTTTCCTGGCCTCCCAGGAGAGGATGGGGCCCCGGGACAGAAGGGTGAACCAGGTGTTGGTGGTCTGAGGGGACCAGAGGGAGCTGCGGGGATTGGCACCCAGGGTGAGAAGGGAGACCAGGGCCAGAGGGGCATTCGGGGCTTGGGTGGGCCTCCTGGAATCGCCGGGCCCTCTGGAGCAAAGGGGGAGCCTGGGACACCAGGTCGACTGGGTATGCCAGGACTTCCAGGGCGGGGAATCATAGGACCTAAGGGCAATCTTGGCCCACCTGGTCCATCTGGACCAATAGGAGAGACGGGCTACGGGCTGCCTGGTCCTAAGGGTGATCGTGGAGGTCCTGGTCCGTCTGGTCCATTTGGGCCCAAAGGTGATGGTTATCCTGGCCCTACGGGAACACCTGGTCTACCGGGGCTTCCTGGTGAACCAGGCCTGGAGGGGCTGGGCATCCCTGGACCGAAGGGCGATATTGGCTTCAGGGGCTTTCCAGGTTTAGCAGGCCCCCCAGGCGAGGGGCTACAAGGTCTACCGGGTGGCATTGGACGACTGGGCCCCCCAGGGCCAACGGGGCCCCCTGGGCAGGGTATTCAGGGGCCAAAGGGCGAGGCAGGGTCTCAGGGCGTGACGGGCCCTCGGGGGCCACCAGGGGAAGGATTCACAGGGGCCAAGGGTGACCGCGGCTCTGGAGGGGAGAGGGGCCTGAAGGGGGTCAAAGGTGATTTGGGTGACCCTGGAGTTCCTGGCCAATCAGGCAGACCAGGGTTCAAAGGTGACATGGGCCTCACAAGAGAAGACATCATTAAAATGATCAAGGAGATTTGTGGTTGCGGAATCAAATGCAAGGAGCGGCCCATGGAGCTGGTGTTCGTCATTGACAGCTCGGAGAGCGTGGGGCCGGAGAACTTTGAGATCATCAAGGACTTTGTGGCGGCCCTGGTGGACCGTGTGACGGTGGGCCGCAACGCCACCCGCATAGGCCTGGTCCTCTACAGCCTGGAGGTCAAGCTAGAGTTCAACCTGGTGCGCCACATGACCAAGCAGGAAGTCAAACAGGCCATACGAAAAATCCATTATATAGGTGAGGGCACCCACACAGGCACCGCCATCCGCAAGGCCACCCAGGAGGCCTTCTACAGCTCTCGCAAAGGGGTGAGTAAAGTGGCTATAGTTAttacagacggacagacggataAGCGGGAGCCGGTGAAGCTGGATATTGCGGTGCGGGAGGCGCACGCAGCCAACATCGAGATGTACGCATTGGGGATCGTGAATACGTCAGACCCCACGCAGCCCGAGTTCCTGAGGGAGCTCAACCTGATCGCGTCGGACCCTGATAGTGAACACATGTACCTCATTGATGACTTCAACACGCTGCCAGctctggaGTCCAAGCTCGTCAGCAAGTTCTGTGAAGACGAGAACGGTGGTCTGGTATACAACGGCTACGGCAACAATGGACACAGGAACGGGAACAATGGGAACTATGGCAACGGGGGCAATGGCTATGGAATCACCAATCAGGAGGACTTCAACAACAGGAGGCGGACAGTCACCACTACCGGCACTCAAAGTCAGGGTGGCAGCGTAGACCTGACCCAGCCTATCAACCCTGGCACTGCCACAGTACAGATAGGGCAGCGTGAGGGAGGCCAGGATGGAGGTATTTACACCCAGGATTGGGGGACTGGTCGCGGGGACGTTCCCACGTTGAACCGcaacacatcctcctcctccagggATTCCTCATCTTCCAATACAGGAGggtcctcttcctcatcatcatcagGAACGTCATCTTCATCCTCAGGGTCCTCAGGCTCTGTCCAGTTAGTGCCTGCATCACGACCCGCACTTCCCAAAGAGTTTGTGCCTCTGGACCCTCGCTGTGCACTGGTCCTAGACCAGGGCCCCTGCCGGGACTACAAAATGCGCTGGTACTACGACAAGCAGGCCAACGCATGCGCCCAGTTCTGGTACGGAGCCTGTGAGGGGAACCAGAACCGCTTCGACACAGAGGAGGAGTGTAAGAGGACATGCGTGCAAGGCAGAGCAGGCTGAGAAGACATCTCACTCAATTCAGTCTTTAAACCGATGTTCCATGGCACCATGTACTTCACGATGGAAGGAGGTCAAGTCATGACAGTATGTTGTACTATTGGATAAATGCTTGTTTGACACtccctagtcccccccccccaccctaccCTTGAACTAAAACTCTACGCACTTATTATAAATATTCATATACTAATTCCAGTGTCTGATTTGAACTTTAATTTTACCGCCAATCTCTGTAAAATGTTtcattaaaggtccaatgcagccgtttttatctcaatatcaaatcatttctggatgacaattaagtaccttactgtggtttggaactctttcttattggtctattaactaatttaccacctggtgatttcaccatggaaggccaaaactccatcccaccaaaacaggctgaaatttcaggcactCTTTCAAACAACTCTTACACTAAAGGGGCATTATCaatattttcacaatttcacagtaatCCTTCAGCCTCATAATGTGGAaacatatataaaacacaggcaaatctagtttttgactgcactgggcctttaatttaACATTACCATTTTCATTCAAAATGAATGGATAGCTCATCATATAACATCATTTTATCACACAATTCAGTCAATCTCACTCAGGTATGTAGTCAAGAAATAGTAGAAAATACCACTTAGTATTAGACACTGATTCattaatacatacagttgaaattggaagttAACATGCACCTTACCAAATACATTTGACCAAATTCAAATacttttttcacaattccagttttTCACATTTACTCCTAGAAGGTctgaggtcagttaggatcaccactttttattttaagaatgtgaaatgtcagaataatagtatagagaattatttatttcagcttttatttctttcatcacattcccagtggatcagaagtttatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746208 lncRNA downstream 8513 20250407 ~ 20250654 (-) True G1525057
TU1746159 lncRNA downstream 63153 20195809 ~ 20196014 (-) True G1525022
TU1746142 lncRNA downstream 91296 20167646 ~ 20167871 (-) True G1525012
TU1746113 lncRNA downstream 154771 20103303 ~ 20104396 (-) True G1524985
TU1746066 lncRNA downstream 207415 20050593 ~ 20051752 (-) True LOC110497091
TU1746182 lncRNA upstream 14392 20300556 ~ 20301395 (-) False G1525035
TU1746183 lncRNA upstream 14392 20300556 ~ 20301395 (-) True G1525035
TU1746258 lncRNA upstream 241554 20527718 ~ 20528164 (-) True G1525105
TU1746260 lncRNA upstream 244861 20531025 ~ 20531299 (-) True G1525107
TU1746291 lncRNA upstream 267759 20553923 ~ 20554810 (-) True G1525132
XM_021571215.2 mRNA downstream 3947 20251274 ~ 20255220 (-) True LOC110495786
XM_021571213.2 mRNA downstream 10834 20239912 ~ 20248333 (-) True LOC110495785
XM_021571207.2 mRNA downstream 66989 20178601 ~ 20192178 (-) False LOC110495781
XM_021571208.2 mRNA downstream 66989 20178601 ~ 20192178 (-) True LOC110495781
XM_021571209.2 mRNA downstream 68311 20178601 ~ 20190856 (-) False LOC110495781
XM_021571218.2 mRNA upstream 18523 20304687 ~ 20309450 (-) True LOC110495789
XM_036952239.1 mRNA upstream 65324 20351488 ~ 20416362 (-) False LOC110495790
XM_021571219.2 mRNA upstream 65324 20351488 ~ 20462793 (-) True LOC110495790
XM_021571225.2 mRNA upstream 182018 20468182 ~ 20491683 (-) False LOC110495793
XM_021571224.2 mRNA upstream 182018 20468182 ~ 20520995 (-) False LOC110495793
TU1745849 other downstream 529099 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 533636 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 682067 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1095041 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 1509772 18749125 ~ 18749395 (-) True G1524311
TU1746271 other upstream 284932 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 1975892 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 2585881 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2873394 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 3195376 23481540 ~ 23541256 (-) True LOC110495851

Expression Profile