RNA id: XM_021571231.2


Basic Information

Item Value
RNA id XM_021571231.2
length 2166
RNA type mRNA
GC content 0.56
exon number 6
gene id LOC110495794
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20527679 ~ 20552117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACGTTGCCTGTAGGGCTCGTGTCAACTCCTTTCTCTCCACCATTGTCAGCGCGCGCAGCCGAAGAATCCTCCACGCGTCCGTCGTGCTGCAAAACCTACTAATTCATTTACGACATAAATCAATTACAGCACCATGTCACTCTGTTATGCTTTTGTGTGAATGGTGCGCAAATATCGTTTCAGCTGCATTGATAATTAGCCTTTCATTTAACAGTTGTCATTTAGGCTACTCATTCGTTTATTTTAGCCAATACGGGACGTCATCTTATACAGTTGCCCGTTTTTTCGTGATGGTTTGACAACATGATTGGCCAGCAACTTCTCATGCCAACAACCTAACTTGATCTCTCAGCATCTAAGggGAAGACGTTGGGTGGTAGACCTACGGCAGGATGAGTGGGATCCTGAAGAGGAAGtttgaggaggtggaggtggacagcccctccccctgcctctctctccaggggTCCGATGACGAGGTCTCTGCCGGCAGCGACAGCGGGAACAGCAGCGACAGCGTCAACCCCGGCCCCTCCACCCCCGTCGCCCCCTCCTCTATCTTGAGGTGTGAGAAGCGCCTGCTGGTGCGCAATGTGCACTTTGAGAGCGTGACGGTGTACTACTTCAGCCGGCGCCAGGGCTTCACCAGTGTGCCCACGCAGGGCGGCAGCACCCTGGGCATGTCCACACGCCACAGCTGGGTGCAGCGCTACACCCTGGGGGAGTTCGCTGTGGAGCAGGAGAGAAGCCACCGAGACATGCTGCGAGACCACCTCAAAGAGGAGAAACTCAACTCCATCAAACTCAAGCTGACCAATAATGGCACTGTGGAGTCGGACGAGGCCGAGTCACTGACCTTGGACGACATCTCAGAGGACGACATCGACCTGGACAACACGGAGGTGGACGAGTACTTCTTCCTGCAGCCGATGACCACCAGGCGGCGCCGCGCTCTCCTCCGGGCGTCTGGGGTGCGACGCATTGACGTGGAGGAGAAGCACGAGCTGCGGGCCATCCGGGTGTCCCGGGAGGAGTGCGGCTGTGACTGCAGGGGGCTGTGCAACCCCGCGACCTGCGCTTGCAGCCTGGCCGGCATCAAGTGCCAGGTAGATCGCATGTCATTCCCGTGCGGCTGCAGCAAGGAGGGCTGCAGTAACGGCACAGGCCGTGTCGAGTTCAACCCCATCCGTGTTCGCACCCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAAAAGAGCCACgagcaacaacaaccacaaccacaggtCACCATTGGTTACCACGGAGAACTACCAGTCAACGTCCCTGTCCAGCGTGCTTTGCAGTACCCCCTGATGTCTGACAACATCCCAGTCCCGCAGGCTCCCATCATGCACCTGCTGAGTGCCAGCGATGTGGAGCAGCATCTAGAAGAGGAAGTGGACGAAGATGAGgaagatgatgaggaggaggatgatgacgaTGGTAGTAGTTTATGTAGTGGCCTCTCGGACTGCAGCACCAACAGCCTGCACACTAGtgactctgaggaggaggaggaggaggaagatgactgTGAGTCTATGGAGGAGGGGGTGAGTGGACCCCCAGTCTCTCACACAGAGgtggtccctctctcctctgtgttggGTTACAGTGATGGCACACAGACCAACACCAACCGCGCTAACCCCAACTCATACTACCACAACCCTTCATCAGGGTACTACCATATGGACAACTCAGCCAAGCTGAACCCCACACCACAATCCCCTTGTGAAGCTCCCTCACTCCGCCTCTCACTCCCCAACAGGGAGGGGGCCACCGATGGCCCCACGGTTGTGTCACAGGAGCAGCCTAAAACCACCTCCGAGCCGCACACAGACCACCTCAGCCAGATAGAGGGACTGTATATGCATTTTCCCCACACTGACAAAGCACCAGCAGCCAACGCCTGTTCCTCAGCCCCGCAGCAGAGCAACACTCCCCACAGTGGGGAGACTAGTACACTACACCATGAGCAGCCCTATCAGACACAGGTTAGCGTTTTtaatcatgaatcttgttctagAGGCAACTCTGcggagtggtcactagctggcacggccacaaagtcataaaatcagattttaaacctaaccttaaccctaaacgtaaccacactgctaaccctaatgcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745225 lncRNA upstream 1067 20499006 ~ 20526613 (+) True G1524182
TU1745196 lncRNA upstream 157081 20370071 ~ 20370599 (+) True G1524154
TU1745176 lncRNA upstream 181639 20345663 ~ 20346041 (+) True G1524137
TU1745175 lncRNA upstream 182171 20345074 ~ 20345509 (+) True G1524136
TU1745174 lncRNA upstream 182673 20344792 ~ 20345007 (+) True G1524135
TU1745222 lncRNA downstream 1729 20553846 ~ 20554995 (+) True G1524179
TU1745284 lncRNA downstream 5762 20557879 ~ 20560856 (+) True G1524241
TU1745285 lncRNA downstream 9376 20561493 ~ 20562121 (+) True G1524242
TU1745316 lncRNA downstream 48020 20600137 ~ 20600848 (+) True G1524272
TU1745321 lncRNA downstream 62098 20614215 ~ 20614829 (+) True G1524276
LOC110495791 mRNA upstream 199070 20313537 ~ 20328610 (+) False LOC110495791
XM_021571217.2 mRNA upstream 225580 20296017 ~ 20302100 (+) True LOC110495788
LOC110497092 mRNA upstream 281792 20244354 ~ 20245888 (+) True LOC110497092
XM_021571212.2 mRNA upstream 290927 20206484 ~ 20236753 (+) False LOC110495784
XM_036951385.1 mRNA upstream 357335 20167233 ~ 20170345 (+) True si:busm1-52i16.2
XM_036952246.1 mRNA downstream 52769 20604886 ~ 20614129 (+) False LOC110495795
XM_036952244.1 mRNA downstream 53337 20605454 ~ 20614129 (+) False LOC110495795
XM_036952245.1 mRNA downstream 53338 20605455 ~ 20614129 (+) False LOC110495795
XM_036952247.1 mRNA downstream 53344 20605461 ~ 20614129 (+) True LOC110495795
XM_021571237.2 mRNA downstream 111294 20663411 ~ 20696331 (+) False LOC110495797
TU1745224 other upstream 43967 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 220776 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 292500 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 451368 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 494035 20015948 ~ 20033645 (+) True LOC110495777
TU1746485 other downstream 204574 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 2047296 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 2047380 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2606716 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3968618 24520735 ~ 24522946 (+) False LOC110495887

Expression Profile