RNA id: XM_036952242.1


Basic Information

Item Value
RNA id XM_036952242.1
length 7497
RNA type mRNA
GC content 0.53
exon number 27
gene id LOC110497093
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20558557 ~ 20595753 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGACGCGCGCTTGGGAACCTTTGTCACTCACTCACGTCGCTGTGTTTTCAGGGATTGTGGTGATTGAGAGAGATAGCCACTCTTGTTACTTAATGCCCTTTCCAACCATGATCTGAGTGTCTCGGTTTTTGGAGACTTATGTGCGTGTCAGATGGTGGTGGCAGGACGGAGATGTTACACATGAGAAGCGGTAAATTCGAGGAATATGGCGACAGCTGCCGCCTCCCCTGCTCGTTTTGAATCCACGACAATTAAGccccctgCCCTGGCGGAGCCCCAAGCTTCCCTGTGAAGGAGCACCATGACAAGATGGCACAGCTGCTTGTACCGCCCGGACCTGACAGCTTCTGCCGCTTCTGTCCTGACTCGCTTGCCGCCATCGAAAGGCGCATTGCCGAGGAGGAGGCCCGGAAACCCCGCGTTGACCGCTGTAGCGACAGCAATGACGACAACGAGCCTAAGCCCAACAGCGACATGGAGGCAGGGAAgtctctccccttcatctacgggGACATCCCCCAAGGCTTTGTCTCCACCCCTCTGGAGGACCTGGACCCCTTCTACTCCAACCAGAAGACATTTATAGTATTAAATCGCGGCAAGGCAATATTCCGTTTCAACGCCACTCCTGCCTGTTACATCCTAAGCCCCTTCAATCCTCTACGGAGAATAGCAATTGCAGTTTTAGTACACTCGATGTTCAGCATGTTAATCATGTTCACCATTTTGACCAACTGTGCTTTTATGACTCTGAGCAACCCCCCGGACTGGGCCAAGAATGTTGAGTACACATTCACAGGAATTTACACATTCGAGTCTCTCATTAAAATCTTGGCGAGGGGGTTCTGTGTGGGGAAGTTCACCTTCCTCAGGGATCCATGGAACTGGTTGGACTTCATGGTAATCTCCATGGCGTATGTAACAGAGTTTGTAAACCTAGGCAATGTTTCAGCTCTGCGCACTTTCAGAGTTTTGCGAGCTTTGAAAACTATCTCGGTAATCCCAGGACTAAAGACCATCGTGGGCGCTCTGATCCAGTCGGTCAAGAAGCTCTCCGACGTCATGATCCTCACCGTTTTCTGTCTCAGCGTCTTCGCCCTGATTGGCCTGCAGCTCTTCATGGGCAACCTGAGGCAGAAGTGTATCCGCAACCTCGCCAATGACACGACCCCCGACGACCGCCTGAACAGAACTCTGGGAACTCCAGACTTAAATGGAACCGATTTCAACGGAACCGATTTCAACATCACTAGCTCCGTAAACTGGACTGAGTACATCAACAATGAGAGTAATTACTATTACCTCCTCAACCGCAGGGACGCCCTCCTCTGTGGGAATGGCAGTGGAGCCGGGTTGTGCCCAGAGGGATTCACATGCATTAAGGCGGGCAGGAACCCAGACTACGACTACACAAGCTTCGACTCGTTTGGCTGGGCCTTCCTGTCCCTGTTCAGACTCATGACCCAGGACTTCTGGGAAAACCTCTACCAACAGaCCCTGCGAGCGGCGGGGAAGCCCTACATGATCTTCTTTGTGTTGGTGATCTTCCTGGGTTCCTTCTACCTGGTCAACCTGATCCTGGCTGTGGTGGCCATGGCCTACGACGAGCAGAACCAGGCCACCATAGAGGAGGCAGCCCAGAAGGAGGAGGAGTTCCAGGCCATGCTGGAGCAGCTCAAGAGACAGCAGGAGGAAGCATTGGTTGCCGCGGCAGCAGCCACAGAGAGCCACGGAGAGTACAGCGGCAGAGGGGGGCCCTCCTCAGAAGCCTCCTCAGGGACCTCCAAACTCAGCTCCAAGAGTGCCAAGGAGAGAATGAACCGTcagaagaagagaaaagagaggggcgAGCACAAGAAGTTCCACAAGTCCGAGTCGGAGGACAGTATCAAGAGGTTAAGCTTCCGGTTTTCGATAGATGCCAACCGGCTGTCCTACGAGAAGAGATGCTCCTCACCCAACCAGTCTCTCCTCAGTATCCGCGGCTCCCTCTTCTCCCCGAGGAGGAACAGCCAAGCTAGCCTGTTTAGCTTCCGAGGCCGCGCCCGCGATGTTGTCTCCGATAACGACTTCGCCGACGACGAGCAAAGCACGTTCGAGGACACCGACAGCCGCCGCGGCTCCTTGTTCGTGCCTTGCCGTGTCGAGTGCCGCTCCAGCACGGTCAGTCAGACTAGCCTGGCCCCTCAGCGCGTCCTGCTGCCCGCCAACGGCAAGATGCACTGCACCGTGGACTGTAACGGCGTCGTCTCGCTAGTGGGAGGGACCTCGGTGCCCACCTCGCCTGTAGGACTGCTCCTGCCTGAGGGGACGACCACTGACTCTGAGATGAGGCTGAAGAAGAGGAGGTCTCGCCAGGCTTCCATGGCCTACCTAGATGAACCagacagagccagagccagagctaTGAGTGTGGCCAGTATTCTCACCAACACCATGGAGGAGCTTGAAGAGTCCAGGCAGAAGTGTCCACCATGCTGGTATAAGTTTGCCAACACCTATCTGATCTGGGACTGCTGTCCTATGTGGTTGAGTTTCAAGGGGATCGTCAACACGGTGGTGATGGACCCCTTCGTGGACCTGGCCATCACCGTCTGCATCGTCCTCAACACCCTGTTCATGGCCATGGAACATTATCCCATGACCACGGAGTTCAATCACGTCCTCTCTGTCGGGAACTTGgtGTTTACAGGCATCTTCACGGCTGAGATGTGTTTCAAGCTAATCGCTCTGGACCCCTACTACTACTTTCAACAGGGATGGAACATATTTGACGGCATCATTGTCAGTCTGAGTCTGATGGAGCTCGGCCTGGCCAATGTAGAGGGCCTGTCTGTGCTCCGGTCTTTCCGATTGTTGAGGGTGTTCAAACTGGCCAAGTCTTGGCCCACCCTGAACATGCTGATCAAGATCATCGGTAACTCGGTGGGAGCTCTGGGTAATTTGACACTGGTCCTAGCCATCATCGTGTTCATCTTCGCCGTGGTGGGCATGCAGCTGTTCGGCAAGAGCtacaaggagtgtgtgtgtaagatcGCAGACAACTGCCAGCTGCCCCGCTGGCACATGCATGACTTCTTCCACTCGTTCCTCATCGTGTTCCGGGTGCTGTGTGGGGAGTGGATCGAGACCATGTGGGACTGTATGGAGGTGGCTGGCCAGAGCATGTGCCTCATCGTTTTTATGATGGTCATGGTTATAGGGAACCTGGTGgTTCTGAATCTGTTCCTGGCCCTGCTGCTCAGCTCCTTCAGCGCCGACAACCTGGCGGCCACGGACGACGACAGCGAGATGAACAACCTGCAGATCGCTGTGGGCCGCATCCAGAGGGGCGTGGCCTGGGTCAAGGTGGCCATCCGCCAGGTTATCCAGAGCCTGTTCCTCGGGGGCGGAGCCACCAAACGGGTCAAGGGGGAGTCACTGGAGGGGGGTAAGACCCTGGACGAGCTCCACAGCTCCATCAATGGCAAGGGGGGCAACTGCATCTCAAATCACACGTTGGTCGAGATCAGTAAAGATCCGAGTGGGGTCTATCTGAAGGAGGGGAACGGGCGGCCCGGAGGGGGGTTGGGGGTGGGGTTAGGAGACAGTACGGAGAATTACCCAAAGGAGGAGTGCAACTACATGTCGTTCATCCACAACCCCAGCCTGACGGTGAGCGTGCCCATCGCGGTGTGCGAGTCAGACTTTGAGACCGCTATCACAGAGGACTTCAGCAGCGACTCGGCCTCCGAGGAAATGTCGATGGGCAGCAAAGAGaaGCTCCCTATAGAGCCCCAGAACCTTATCTCGTCGGAGGGCAGCTCGGTGGATATCGGTCCCCCGGGAGATGGAGCTGAGTCAGTGGAGCTGGAGGACGAGGAGTCAGAGAACCCAGAGAACTGCTTCACTgatgacTGTGTGCTCAGGTTCCAGTGTTGCCAGGTCAACGTTGAGGAGGGCAAGTGGAAGATGTGGTGGACTTTGAGGAAGACGTGCTTCCTCATCGTGGAACACAACTGGTTCGAGACCTTAATCATTTTCATGATCCTGCTCAGCAGTGGCGCTCTGGCGTTTGAAGACATTTACATAGAGCAGAGGAAGACCATTAAGGTAGTGCTGGAGTACGCAGACAAAGTCTTCACTTATATCTTCATCCTGGAGATGCTGCTGAAGTGGGTGGCCTACGGATTCAAGAAGTACTTCACCAACGCCTGGTGTTGGCTGGACTTCCTCATTGTTGATgtgtctCTGGTGAGCTTGGTAGCCAATGCGTTAGGCTACTCTGAGCTGAGTGCCATTAAATCTCTACGAACCCTGCGGGCCTTAAGACCCCTGAGGGCCTTGTCACGGTTCGAGGGCATGAGGGTGGTGGTGAACGCCCTCCTGGGTGCCATTCCGTCCATCATGAACGTGCTGCTGGTGTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGCGTCAATCTGTTCGCAGGGAAGTACTATCACTGCGTCAACACCACCAACGACGAGACCTTTCCCATCGAGGTGGTCAACAACAAGAGCGACTGTCTGGCCCTGGCCAATGACAGCGCCCGATGGAAGAATGTCAAGATCAACTTTGATAATGTCGGGGCCGGGTACTTGGCCTTGTTGCAAGTGGCAACGTTCAAAGGTTGGATGGACATCATGTACGCAGCTGTGGACTCTCGTAATgtGGAACTTCAGCCCCAATATGAACAGAACCTCTACATGTATCTGTACTTCGTCATCTTCATCATCTTTGGCTCCTTCTTCACTCTCAACCTCTTCATTGGTGTCATCATTGACAACTTCAACCAACAGAAGAAAAAGTTTGGAGGTCAGGACATCTTCATGACAGAGGAACAGAAGAAGTACTACAATGCCATGAAGAAGCTCGGCTCCAAGAAGCCCCAGAAGCCTATTCCCAGGCCAACGAATGCATTCCAAGGCTGTGTGTTTGACTTCGTAACGAAGCAGGCTTTTGACATTGTCATCATGATCCTCATCTGCCTCAACATGGTCACTATGATGGTGGAAGAGGATGACCAGACACCAGAGAGGGAAAAAATCCTCCACTGGATTAACTTTGTCTTTATAGTGCTCTTCACTGGGGAGTGTACGCTCAAAATGATATCCCTCCGCCATTACTACTTCACCATTGGCTGGAACGTGTTTGACTTTGTCGTTGTCATCCTTTCAATCGTAGGTATGTTTTTATCAGAATTGATTGAGAAGTACTTTGTTTCCCCAACGTTATTCCGAGTCATCCGACTTGCCAGAATCGGCCGCATCCTCCGTCTCATCAAGGGCGCCAAGGGCATCCGGACGCTTTTGTTCGCCTTGATGATGTCACTTCCTGCCCTGTTTAACATTGGCCTCCTGCTTTTCCTGGTCATGTTCATCTACGCCATCTTCGGCATGTCCAACTTCGCCTACGTCAAGCACGAGGCGGGAATCGACGACATGTTCAACTTCGAGACGTTCGGCAACAGCATGCTCTGCCTGTTCCAGATCACCACGTCGGCGGGCTGGGACGGCCTCCTGGCTCCCATCCTCAACAAGAAGGAGCCCGACTGCGACAGCCAGATGGAGCACCCGGGCACCTTGTACCGGGGAAACTGCGGCAACCCGCCAGTGGCCATGTTCTTTTTCGTCAGCTACATCATCATCTGTTTCCTCATCGTGGTCAACATGTACATTGCCGTCATCCTGGAGAACTTCAGCGTGGCCACCGAGGAGTCGGCCGAGCCGCTGAGCGAGGACGACTTTGAGATGTTCTACGAGGTGTGGGAGCGCTTCGACCCGGACGCCACGCAGTTTGTGGAGTACGACAAGCTGTCGGACTTTGCAGACGCTTTGGACCCACCGCTGCGAATGGCCAAGCCCAACCACATCCAGCTGATCAAAATGGATCTGCCCATGGTCAGCGGGGAGCGCATCCACTGCCTTGACATCCTGTTTGCCTTCACCAAGCGTGTCCTGGGAGAGGGTGAAGGCTTGGACCTCCTCCGGGGCCAGATGGAGGAGCGCTTCATGGCCTCCAACCCCTCCAAAGTCTCCTACGAACCCATCACCAGTACCCTGCGGCGCAAGCAGGAAGACATGTCTGCCTTGGTGATCCAGAGGTCCTTCAGGCGCTACCTGGCCCGACTCGCCCTGAAGAAAGCAGCAGAGCTCTACAAGGAGCAGCCTAAAGGCAGCGTGATGTATGAGCTGGAGGACAAGGAGGTGCTGGTGATAGGACAGTTCGCGGACAACTCCACCTCCACAGAGAAAACGGACATTACGCCCACCACCGCCTCGCTGCCTTCGCACAACAGTGCCACAAACTTGAAAAAGGACCAATATGAGaaagaaaagagggagaaaaagaagaGAGACAGATCTGAGAGAGCAAAATAAATAAGCGAACAAAAGGACAAATGATGAGTACGAAGACGTTTGCTTTGAAGAAAAACAGTTTTACAGATTTGGAGGACCGATGTATGCTAATGTGTTGGTGGAGagggtgtggtggtgttgggTGCTAGGCCAAACTGATGTGTAGCTAGCTGAGGCCTGAGAGCAGGATTGGAGCCATTTAAGGGGACTGTTCCAGGGGGTTACATAGTAACAAGGCAGGGGAAGATTATTGTTATGTATCACTGCCAGGAGTAAGTGAAAGACGGCGACTCAAAATGCCGTTGCGTAACCGCTTGTGATTTTCTGTTGAGTGTTACTATCTGACACACATGAGTATACTGTGAAGTTTTCTGTAGCGAGTGCTGCTGCTACCATCATACATCCAGTGTCTTGAATAACGGTCGCCGTGTTACTTAAGGTTCTTGCATTTTTGTACAATTTCATTGTTTTTTTATGGTAAGGAATGTGTTATTGTGTAATTGTGAGAATGTGTCCACTGCTTTTCACGGTTGTAAAAACACCATGTACAGCAAAACTCAGCGACTAAACAAATCCATGTTCCCAATACTAACGCCATATGTGTTTTGTTACTCCCAGAACTATTTGTTCTCAGGCAGCAGTTTTCGTGTATCCCTCTGGGAATAAgtaggcactgtatatgtaactAACCGGGTCTCCTGCACACCACAAGACTGTGCTAGCCCGCTGAGGTAAGGTCTGAGACTTAGCTCGGGGGAGCTAACCCAGGTCTTCAGGTTACTCATCACGTGAACGTTACATTATGCACAAACTAATCATCGGTGACACTTGGTAAAGATATATCTCGTACTATATCTCGTACATCTATATGAATGGCTGTTGTTCTCCCCTCGCTGTTTCTATGAACACGCCCACGGCCACAGAGATCCTGAATGTATGTCAACAGATTCATTGAGAGGGATTCAATGAGATCTTCTTCATTTTCGTAGACATTCATTGTCACAAAGCAATGTGTCCGACAGATGTATttcaatatctctctctatctctccactcCTTGTTTCTGTCGAAACACTCGTGTAAAGAAAGATGACTAACAAAAATATAATAAAGGGAACACATTGATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746291 lncRNA downstream 3747 20553923 ~ 20554810 (-) True G1525132
TU1746260 lncRNA downstream 27258 20531025 ~ 20531299 (-) True G1525107
TU1746258 lncRNA downstream 30393 20527718 ~ 20528164 (-) True G1525105
TU1746182 lncRNA downstream 257162 20300556 ~ 20301395 (-) False G1525035
TU1746314 lncRNA upstream 20033 20615786 ~ 20616039 (-) True G1525152
TU1746357 lncRNA upstream 54429 20650182 ~ 20650404 (-) True G1525195
TU1746417 lncRNA upstream 97059 20692812 ~ 20693057 (-) True G1525255
TU1746425 lncRNA upstream 97816 20693569 ~ 20694149 (-) True G1525260
TU1746430 lncRNA upstream 108875 20704628 ~ 20704830 (-) True G1525265
XM_021571223.2 mRNA downstream 34682 20468182 ~ 20523875 (-) True LOC110495793
XM_021571222.2 mRNA downstream 34734 20468182 ~ 20523823 (-) False LOC110495793
XM_021571224.2 mRNA downstream 37562 20468182 ~ 20520995 (-) False LOC110495793
XM_021571225.2 mRNA downstream 66874 20468182 ~ 20491683 (-) False LOC110495793
XM_021571219.2 mRNA downstream 95764 20351488 ~ 20462793 (-) True LOC110495790
XM_021571235.2 mRNA upstream 20981 20616734 ~ 20620719 (-) False LOC110495796
XM_021571236.2 mRNA upstream 20981 20616734 ~ 20620719 (-) True LOC110495796
XR_005037407.1 mRNA upstream 191320 20787073 ~ 20835521 (-) True LOC118941121
XM_021571239.2 mRNA upstream 259671 20855424 ~ 20863001 (-) True zgc:92027
XM_036952254.1 mRNA upstream 304749 20900502 ~ 20943841 (-) False LOC110495804
TU1745849 other downstream 828489 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 833026 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 981457 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1394431 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 1809162 18749125 ~ 18749395 (-) True G1524311
TU1748552 other upstream 1666303 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 2276292 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2563805 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 2885787 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 2946853 23542606 ~ 23543493 (-) True LOC110495852

Expression Profile