RNA id: XM_036952244.1


Basic Information

Item Value
RNA id XM_036952244.1
length 3394
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC110495795
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20604886 ~ 20614129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTGTTGCGAGTCCTAGAACTATAAAGCCTCCTAGCAACGCATTCCGGAGAGCAGCACTCACGTATTACAGTATAGAAACGTGGTGACGAACATTTACTCACAGCTGCAGAGGAAGGCATGCATTGTTGAACTCGCTTCTGACATAAACTAGGGGTTTGACACTTTGCATGCTGGTGCTCAGTTTTGTCAACTACGCTTGCCCCAAAACGTTGAACAATACGTTTGTGTGCGTGAATATTAGGTCTTTTTTATTTGACGACCGTGTCCAGAAAAGCCATTCCGATGTTGTCTCGAGATTCACCTGAGATTGAGTCAAGTCTCAGACTTTGGTCGCGTCTAGACCCCTGGGGAAGATccatggaggagaaggaggagaaccCGCTGGAGAGGGAGCATACTCTAGCAGTGGTTCTACCAGGAGGCCTGGAGAAAATGGCCACGGTACATGGGAGTAAACCTGTGATGGACTTGCTGGTCACACTCTGTGCCCAGTACCACCTGAATCCATCTGACTTCACCATGGAACTCCAGTCGGCCAATAGAAACGACATCTCCTTCAAACCCAGCACTCTGATTGGAGCCATGGAGCCTCACAGGATCCTACTGAAACctaaagggggagaggagaagataaAGAGGCCGTACGTGCCAGAGGTCACTGTACGTCTGCTGATCAACTACAAGAAGAACCATAAGGCCGTTGTGAGGGTCAACCCTAGAGTCCCTCTGGAGCAGCTCCTGCCTGCGGTGTGTGAGAAGTGTGAGTTTGACCTGGAGTCCACCATTTTTCTGAGAGCCAACGACTCTGAAGGACCTTTAAACCTGAGCAGGTCCCTCGATGACTATGGACTAAGGGAACTATACGCCAAGAACATGGCAGAAGCACCTGTAGAAACACCCACCCTACCAAGTAAAgagcagaaacagaaacagaaagagaaagagaacaggggATTGTTCGGCTTATTCAGGAGAATTAAGAAGAAACCAGAAAAGGGTCTCTCAGTGAGTGCCCCGGCCTCGCGTGGTCTGAAAAACCAGCGGGTGGCCAGCATCAGCATGAACTCCCTGGGTATCCACTCCTCCAACACCCTGCCCATGGACAACACCATGGTCAAGAAAAGACGGGCACCCATGCCCCCCATGGCAGGCTCCGAAAGTGTCCCTGCTAACCTCAACGTCCAGCCGTTGACCTCTAGGAAGAAGAGGAGAGCCCCCCCGCCACCCCCCTGTGCCCCCCCACCACCATCCTCCTGTGTTAACACCCACAAAGGAGCACCCCAGGACACTGAGATCAAAGGGAAGGGAGTATCACTTTACACActggaggagatgggagagtgtgaggaggacCTGGACTCCACATCCTCATCCCCAAACATCTCCAGCCCTTTGACTCAGCCCCGAGTGCCCCCCACTCCCCCTTCTACCCCATCCACTACCTCTTGTCCCTCTAGCACCTTTCCACCTTCCGATCTctaccatccctctcctctctgccctccctcctctcccaccatagGGAAGACACTAACCCCTTTCCTGCTTTGTCAAACCAGGGCCAACCTCAAGCATCCTTCGTTCCCAACCCTAAGACCTGTCAACTCCACCAACGGAGGGTCCCCTGTGTCCTTGACACAGTCGGGTGGAAGTAAGGGATTCAGTCCCCTCTCTTTACTCCAACTCAAGACCAAGGCCCCTGGTGAGGCTTGGAGGAGTCCCGGTCTGAGGGAGGGGTTGACCACCTTCACCGTGGTGCCCCGAGGGCAGTCACTGATAGGGCACAGGGGCTTGGAGGCGGACCTGACCCTGGCGAAGACCCAGGCCTTAGACCCAGCACAAACCATTGATGAACCCTCTAATGGTGTTGCTGAGCCTGGGTTGGAGCACCACCGGACAATGAAGAAGACACCTGTATTGCTGGAGAGGTCAGTGGTTGAGGCATCCACCCCAGAGCCTGATATGGATTCTAAACTTTCTCCTCCAGGGTTTCCAGAAGGTTCTACTGACTGGGTCATCAGTCCTCCAACCGTGTCTAGTCCTAGCGAGCTTTACCAGACCGCACCAAATTCACCAGTGGTAGTCAAGCAGGAGAGTTCAGAGGTTGAGGCCCAGGAGGAGTCCGAATCACCCACAGACAGTGTAGATTCAGAACTACAGAAAAGTCTAGAGGTAGAAGTCCTAGAGGAGTCAGATTCACTCTCAGAGATACCCAACCCATACGCAGCTGACCTGTTGGCCCACACCAATGGAATACCTGGAGATGAGGTGACCTCAACTCCTGAACTACTAGAGAGCAGAGGATCGTTCCGGAAGCTCAGTCTGGTGATGGAGGCCGAAGAGGACCGTTTCTgtttccctccaccccctccccctgTGTGCTATGAtaaggaggtggaggagacagAGCCAACCCAGTTACGATTGAGGCCTCCTGGGGGAAGAAATCACCGCCCTCCCTCTtatcctccctcttctcttcctacGCTGAGTCGTTCCTTCTGtgaaccagcagagggagacaatCAGACTAACGCCCCTTCACCCAAACCATACGTGCCTGCAGCCAAAACCCTGGCCAGGAAAACCGGCATCCCCTCCTGCTTTGCCCAGGCTGTGGCTCTAGCAGTCCGTAAGTCTCAGTCCTCCCGAAGGCCAGCACCAGACTTGCTTCCCGCCTGTTCCTCCCATTCCGGTTCCTCACCCTCCTCTGCCTTACCGCGAACCAATGTGgtcatcccaccagcctccactgctttaCACAGGAAAGAAGGGAAGGGCATATCTTTATGTGAGTGTGTACATTTTACAGtggtattttttttctctctggaaAGACGTCATTTGTTACATTAAATGGCGACCTACGCCTTTCTAAACAGTCCTGCCAGGCTGGTATTCTTCTGAGACACCTTGGTGTTTGTCTGTTATCTTTATGTGGTATATGGCCCTGTGGAATACCTCTGTGGACACGCTCACACTCTGTGTGACCTGGTGGAGGAAGGACTTCATCTAAACTGGTGATATTTGTGTCTCTTGTCCCACAGGGGCCATAATGGCTTCTTAGTAAATCTGTGAATGGAAGTTCCTGTTTAGAGTGAGGCGACTGCAGTGAAGTAGTAGTAGTCGGCCACCACATAGTCACATGACCTCCAAGTGGACCCCACTTATAGGAACCCAGGCCCCTTGTTTTGCACGGGGAGTCAGCACGTTATAGAAACGTTTATCCAAGACTTCATCCAAGAGTTTGGTTAGTGTACAGGTCATTTTATGTTcactgaatgtttgtttttttgaatCATGCTACCTGTATTAACCGGAGGCAGTGCTGCCTTATGTTATTAAGATGTTTGACTTACAAATGAGCCAACAGGAAACTCCATGTACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745316 lncRNA upstream 4606 20600137 ~ 20600848 (+) True G1524272
TU1745285 lncRNA upstream 43333 20561493 ~ 20562121 (+) True G1524242
TU1745284 lncRNA upstream 44598 20557879 ~ 20560856 (+) True G1524241
TU1745222 lncRNA upstream 50459 20553846 ~ 20554995 (+) True G1524179
TU1745225 lncRNA upstream 78841 20499006 ~ 20526613 (+) True G1524182
TU1745321 lncRNA downstream 86 20614215 ~ 20614829 (+) True G1524276
TU1746340 lncRNA downstream 25420 20639549 ~ 20639831 (+) True G1525178
TU1746344 lncRNA downstream 28374 20642503 ~ 20642820 (+) True G1525182
TU1746352 lncRNA downstream 32941 20647070 ~ 20647390 (+) True G1525190
TU1746373 lncRNA downstream 48569 20662698 ~ 20662981 (+) True G1525211
XM_021571226.2 mRNA upstream 53337 20527679 ~ 20552117 (+) False LOC110495794
XM_021571231.2 mRNA upstream 53337 20527680 ~ 20552117 (+) True LOC110495794
LOC110495791 mRNA upstream 276844 20313537 ~ 20328610 (+) False LOC110495791
XM_021571217.2 mRNA upstream 303354 20296017 ~ 20302100 (+) True LOC110495788
LOC110497092 mRNA upstream 359566 20244354 ~ 20245888 (+) True LOC110497092
XM_021571237.2 mRNA downstream 49282 20663411 ~ 20696331 (+) False LOC110495797
XM_036952251.1 mRNA downstream 171940 20786069 ~ 20852072 (+) False LOC110495798
XM_036952248.1 mRNA downstream 171940 20786069 ~ 20855643 (+) False LOC110495798
XM_036952249.1 mRNA downstream 171940 20786069 ~ 20855643 (+) False LOC110495798
XM_036952250.1 mRNA downstream 171940 20786069 ~ 20855643 (+) True LOC110495798
TU1745224 other upstream 121741 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 298550 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 370274 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 529142 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 571809 20015948 ~ 20033645 (+) True LOC110495777
TU1746485 other downstream 142562 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 1985284 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1985368 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2544704 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3906606 24520735 ~ 24522946 (+) False LOC110495887

Expression Profile