RNA id: XM_036952254.1


Basic Information

Item Value
RNA id XM_036952254.1
length 5663
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC110495804
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20900502 ~ 20947386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAGGATGAGGCTGGCTGGCATGGGGAAGAGGAACCGGTGAGAAGAGCCTGGCTCGACCTTACCGCCAATACCTTTAGCCGACAAACACCGGTTCTGTCCGGGGCTTGGATTCTGAGCTTCCATCTTGCGGTCTCTCGACCACTGTAAAACCAAGAAGAAATCTTGGGCATCCTTGCCCACACTGATGCGCCATGTTATCGGGGAGCTTGGACCCCAACTCCAATGGATTTAACTGCCAGAGGACTGATGATGAGGCAGTCCTGGACAGAGGGGGCACTCGCTCCATGCTCAACACCAACTTTGAGAAGGAGGAGCTGGAAGGCCACCGGACCCTTTACATCGGGGTCCACGTTCCCCTGGGGAGGAAGTCCCACCGACGTCACCGTCACCATGGCAGCCACAACAAAAACAGCAGGAAGAGATCCAAAGAGAGGGAATCTGGGGTGGACGGCGATGGCAGAGAATCACCCTCCCACACAGACACTCCTGCCCAGAGGGTGCAGTTCCTTCTGGGGACAGAGGATGGTGATGAGGAGCACATACCTCATGCCCTCTTCACTGAGCTGGATGAGATCTGCCTGAGAGAGGGCGAGGATGCAGAGTGGAAGGAGACCGCCAGgTGGCTGAAGTTTGAGGAGGACGTGGAGGATGGAGGCGAGCGTTGGAGCAAGCCCTACGTGGCCACCCTGTCTCTTCATAGCCTGTTTGAGCTGAGGAGCTGCATCCTCAACGGCACCGTGCTGCTGGACATGAGGGCCAACTCACTGGAGGAGATCGCCGATATGGTCCTGGACCAGCATGAGGTGTCGGCCGGGGTGGGGGAGGACGTGAGGAGGAGGATCCGTGAGGCGCTCCTGAAGCAGCACCACCACCAGAACCACAAGAAGCTGGCCAACCGCATCCCCATCGTACGCTCCTTCGCCGATATTGGCAAAAAGCATTCCGAGCCCCACTCCATGGACAAGAACGGTCAGACTGTCTCTCCCCAGTCCCAGCCAGCCACCACAGAGGGCAAGGAACATGTCAGCCGGGAGAACAGCCATGTGGACTTCAGCAAGATTGACCTCCACTTCATGAAGAAGATTCCACCCGGTGCAGAGGCATCCAATGTCCTGGTGGGGGAGCTAGAGTTCCTGGAGCAGCCTGTGGTGGCCTTTGTCCGTCTGTGTCCCGCCGTGCTGCTCAACGGCCTGGCTGAGGTCCCCATCACCACCAGGTTCCTGTTCATTCTGCTGGGGCCTCTGGGAAAAGGACCACAGTACCATGAGATTGGCCGATCCATCGCAACTCTGATGACAGACGAGGTGTTCCATGACGTGGCGTATAAAGCCAAGGACAGGAACGACCTGGTGGCCGGCATCGATGAGTTCCTGGACCAGGTCACTGTGTTGCCACCTGGGGAGTGGGACCCCTCCATCAGGATAGAGCCGCCCAAAAATGTGCCCTCTCAGGAAAAGCGCAAGGTCCCTCCTCTACCCAATGGAGATCTGGGAGAAGCAGAGGAACCTGGTGGCCATGGAGGCCCAGAGCTACAGCGCACAGGAAGGTTCTTTGGAGGGTTCTTCATGGACATCAAGCGCAAGGCGCCCCACTACCTGTCTGACTACACGGACGCTTTGAGCCTGCAGTGTCTGGCCTCCTTCCTTTTCCTCTACTGTGCCTGCATGTCTCCTGTCATCACCTTCGGCGGACTGCTGGGGGAAGCCACCGAGGGACGCATAAGTGCAATTGAGTCCCTGTTCGGAGCCTCCATGACTGGGATAGCCTACTCCCTGTTCGCTGGGCAGCCTCTCACCATCCTAGGCAGCACAGGCCCTGTTCTAGTGTTTGAGAAGATTCTCTTCAAATTCTGCAAGGACTATGACCTGTCCTACCTCTCCCTGAGGGCCTGTATCGGCCTGTGGACGGCGTTCCTCTGCCTGGTCCTGGTGGCTACAGACGCTAGCTCCCTGGTCTGTTACATCACCCGCTTCACAGAGGAGGCCTTCGCCTCTCTCATCTGCATCATCTTCATCTACGAGGCCCTGGAGAAACTCATCCACCTGGGGGAACACTACCCCATCAACATGAACAACAACCTGCAGAAACTCACCCAGTACTCgtgtgcgtgtgtggagCCAAAGGATCCCAGCAACTCCACTCTGAGGTACTGGGAGGACAGGAACATCACTGCATCAGAGGTCAACTGGACCAGCATGGAGGTCAAGGAGTGCTATGTGTTCCGGGGGGAGTTTGAGGGCAGCGCCTGTGGCCCCCACGGACCCTACATTCCTGACGTCCTCTTCTGGTCCGTggtcctcttcttctccactgtcttcaTGTCCGCTTTCCTCAAGGAGTTCAAGACCAGCCGCTACTTCCCCACCAAGGTGAGGGCCCAGATCAGTGACTTTGCTGTTTTCATCACCATCCTCACCATGGTCTTAGTGGACTACGCCCTAGGAATCCCCTCACCCAAACTGCAGGTCCCCGACAAGTTCaagCCAACCAGAGACGACCGTGGTTGGATCGTGAACCCAATAGGACGCAACCCGTGGTGGACCACCATAATCGCGGTCCTCCCTGCGCTGCTCTGCACCATCCTTATCTTCATGGACCAACAGATCACGGCTGTTATCATCAACAGGAAGGAGCACAAACTGAAGAAGGGCTGTGGCTACCACCTGGACCTGTTTGTGGTGGGGGTGATGCTAGGGGTGTGTTCTGTGATGGGCCTGCCCTGGTTCGTGGCGGCCACCGTGCTCTCCATCTCCCACGTCAACAGCCTGAAGCTGGAGTCAGAGTGCTCGGCCCCCGGGGAACAGCCCAAGTTCCTGGGGATCAGAGAGCAGCGCTTCACCGGCCTCATGATCTTCCTGCTCATGGGCTGCTCCGTCTTCATGACCTCTGTCCTCAAGTTTATCCCCATGCCTGTACTGTATGGAGTGTTCTTGTACATGGGAGCGTCCTCACTGAGAGGTATCCAGTTCTTTGACCGTCTCAAGCTGTTTGGCATGCCGGCCAAGCACCAGCCAGACTTCATTTACCTGAGACACGTCCCCCTGAGGAAGGTCCACCTCTTCACCATCATCCAGCTCAGCTGCCTGGTCCTGCTGTGGGTCATCAAGACCTCAAATTATGCCATCGTCTTCCCCATGATGGTGTTGGCTCTGGTGTTCATCCGTAAGCTTCTGGACTTCATGTTCACCAAGAAGGAGCTGAGCTGGCTGGACGACCTGATGCCTGAGTGGAAGAAGAAGAAActagaggaaggagaagaagagGAGGAGCCCAGTAttatagtggaggaggaggaggggatagtCAATTTGCCACTGGAAGGAAATTACAAGAGCGATCCCGCGACGGTGAACATTTCCGACGAGATGTCCAAAGGCTCCTTCGGGAACGTGTGGAACAGTATTAGTCCCAGTGACAGCGCCAAGAAGGACCCAAGCTCCAAAAGCGGTTGCGAGAGAGGACATAAGAGGAAGGACTCAAAGTTGGACAGGGAGACGAGTTTGTGATCCATACCGGCTTCGTCACCGCTCTGCGGAAAATAACTCATCTGACGTGCCACACTCGACCACCTCTGAACTGTGCTGCACCATGCGTTCTCGTCatgtaagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaactcaTGTAAATCTTTTAGAAACAGTGTTACCCTATGGAGGAACCAACAAACATTAACTGTGATTATTTTCTATGTATGTCAATGTATGGTGATACCAGAAACAGAGGAAGCAAGGAATTCATATTATTATGTGTATCTACCCGTGGGCCAATTTattacatatgtaggatcttaatttgagaaaGTTTTGTAcagtaggaaaataatcctgaAGTAACATGaaatgtgtggattataattaatggaaatTTTTGTAAGGGCTGAACATATTTTCATAAggtaaaatcaagtctgaaatttttTGGTGAAAATTAcaaaacttcagaagcctttttaaaccgtaaatacactacatgtttTACAAGTAtttctgcaacagggtgatcaaattaagatcctacatctgtgtcaACCAAATGGTTTTTAAAGAAACTTTACTTTTTAACGGAATCGTTtgtattttgtatgttttttttctattttttcaaCATAGTAatccttaaaaaatatatatatattacaatataCAATGAAAATCTTGTTCATGGAATAAgcaatgtgtgttttgttttgtaattTGACATCACTATCGGGTCTGTGCACTTAACGATACGAaaacagtatactgtatatgtatcaAATTAAAGTGTTAAATGTACCATTTTTTTTTTGAAAGCTCATTTGTAAAATTTTCGCTGACATTTTCCTGAAGATTTGTTGATAGTATTTTTCTCCATTACAGTGTGGAGGCAGGTCAGTGTTATATTTCAGGCATTGGGGACCATTACATTCCAGTTAGCATAGCAGCATAGCCCTGCCATTCTATACCTATTGGGAATGTGATTCCTATAGGGTTTTAACCATAGACTAACAAAGAACATCTTGTAGTAATTTATAGGATCTCTGGTTTTAACGATCAAATTGTCTCTGAAAGTCTTTAGATGACCGTGTAGAGATACAgagtcttcagaaagtattcacaccgcttgactTTCCCCACAttctgttgttacagcctgaattcaatatgaataaacatttttttttttaaggtcactggcctacacacaataccccataatgtcaaagtggaattatgttttttgaaattaACAAATGAATTCAAATGAAAAGCTcaaatgtattgactcagggagtcgaatacttatctaataaagatatattcctgtttttttttcttaatttttacagATGTTAGAATTTTATTCCaatttgacagagtattttgcaTAGCCCtttgaccatttttttttttttttacaattaaatcaattttaatcccactttgtaacacaaaatgtggaaaaagtcaaggggtgtgaatactttctgaaggcacagtacgTGTACATGTGTGTTCCACGGGCATACAAATGTGTTTTACCGGCATACTGTTCCAGTCACCCTGTCGGTACGTTATGTGATATCTTCTCCTGCATTCCAGTTTGTTTGACACCTACAAAGTGATGTTGTGTTCTGATTCTGAACTACCAGTAACTGTATTTAAACGCCTGCACAAAGGTGAATCAAACTTAGCTGTGTCTTTCTACAGGCTGTTGTGGTTAATTGATAGAAATGCAATAATAGCTTTGTGAGAAAGGGCAAAATGTAATAAAGTGAAGACTCTTAACGATGTACTATACATAGTATATTTTATTCATGTTTAAAGTGTTACTAATATGTTTCTAAAAACTTTGAATTGGGGTAAGTGAAGACTTGTGGTTTTTATGTTGTCGACGTCTCTCCCATTGTACTGTGTTGTGATGGACTTTACTTATTAAAGAAATAATAATGGGTCAATATCAAATTTTGGCCACTTGTAGAAATCTGCCTTAAAATGTAGTATTGATAGCTGAGAAGACAAGTTTATGTTTCAGAATTTATCGACTCATCTGTGTAAAATGATCAATTCAGATATTTGTTGTTCTATTATAAATGTGATTTGTTatacgagagaaagagaaatgtaCGAAACAATAAAGTGACTCAAGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746796 lncRNA downstream 8155 20892069 ~ 20892347 (-) True G1525597
TU1746477 lncRNA downstream 152064 20748190 ~ 20748438 (-) True G1525312
TU1746462 lncRNA downstream 171350 20728920 ~ 20729152 (-) True G1525297
TU1746444 lncRNA downstream 185115 20715175 ~ 20715387 (-) True G1525279
TU1746433 lncRNA downstream 193421 20706677 ~ 20707081 (-) True G1525268
TU1746864 lncRNA upstream 80505 21024346 ~ 21024693 (-) True G1525645
TU1746865 lncRNA upstream 80976 21024817 ~ 21025196 (-) True G1525646
TU1746868 lncRNA upstream 86192 21030033 ~ 21030807 (-) True G1525649
TU1746869 lncRNA upstream 87367 21031208 ~ 21031411 (-) True G1525650
TU1746870 lncRNA upstream 90185 21034026 ~ 21034260 (-) True G1525651
XM_021571239.2 mRNA downstream 37501 20855424 ~ 20863001 (-) True zgc:92027
XR_005037407.1 mRNA downstream 64981 20787073 ~ 20835521 (-) True LOC118941121
XM_021571235.2 mRNA downstream 279783 20616734 ~ 20620719 (-) False LOC110495796
XM_021571236.2 mRNA downstream 279783 20616734 ~ 20620719 (-) True LOC110495796
XM_036952241.1 mRNA downstream 304749 20558557 ~ 20595753 (-) False LOC110497093
LOC110495806 mRNA upstream 5289 20949130 ~ 20955845 (-) True LOC110495806
XM_021571254.2 mRNA upstream 12038 20955879 ~ 20966920 (-) True LOC110495808
XM_021571250.2 mRNA upstream 24406 20968247 ~ 20976867 (-) False LOC110495807
XM_036952257.1 mRNA upstream 24406 20968247 ~ 20976867 (-) False LOC110495807
XM_021571249.2 mRNA upstream 24406 20968247 ~ 20976907 (-) False LOC110495807
TU1746271 other downstream 328635 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 1170434 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 1174971 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 1323402 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1736376 19143985 ~ 19164126 (-) True G1524473
TU1748552 other upstream 1318215 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 1928204 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2215717 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 2537699 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 2598765 23542606 ~ 23543493 (-) True LOC110495852

Expression Profile