RNA id: LOC110495806


Basic Information

Item Value
RNA id LOC110495806
length 5311
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110495806
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20949130 ~ 20955845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCATGGGTGATGTGTTGCGGTTTgactggctggtctcagatgggTGTCTGAGAGAAAGTTTTGGTCCATACACACACAAtattgcatctgaaatggcacactAATCCTTTATGTAGTTCCCTGGTCAAATCTAGTACACATATATTGTGAATGGGGTGCCATTTCTGACACACCCTATGAATCTTGCCAAGCTGCCAGCTATCACTAGCTGTCATTTTTCAATTAGTTATGCCATGGTTGATGGCACTTCTGATACTCCTTGAAGCCTTGTTTTCCAATCACGTTAAAATTACCCTCCCCATTTGATGTGAGACATGCCCACTTTCAAGATTGAGTAATACTTTCTGATAAAAAAAGGAAATATATGAATGTTGTCATAAACTATAAACGTGTTTTAAATATATAATCTACCTGCCACATGGTACTAGAGGTATAACATTAGCAGTATTTTGTTCCAGTCCAGCAAAACGAACATGAGAAATGTCTATAACTGTTTATATAGGCTACTTCACCTTATTCCTATACTGTAATGTAAAATGTAACAACTGTAGGCGTTTCATTAGGTTCGTTCCAAGCGTATTTAGAGTTCATATTCCCTACATGTGATACGCGTAACCTTAACCAAATTGGTTTTTGTGTTGCGCGTAATGCTACTTGTGCAGCTCCAGTATCTTCGCATCTCAACATCCAACGCCCAATAATATGGATAGCGACTACCACAGCTCAGACAGGTCTGAACTCGCTACCCAGTACCACCCTATGCTCTCCTCTAGTGAGGGGCTGAACTGAATAGAGGAACTAACACGTTCTAATAAAGAAACCACAGGGATGACAAATCCGTCAGAAGCAGACGACTTTATCGACTCGGAGGACTCATTTGGTGACGGCGACAAGGGAAGCAGTAGGCAGTCTGCTCAAAAAACCGTCTGTGACATTCGTCATACCTTCCATGGATCTACAGAGGGACGGTATCCCTCGTCTCAGCCCAGCCAAGCTCAACCCGCGTCTGCTACCTCGCCTGGTACCATGTTCCCACACCGGACACTGCACGGAGCCACCTACCCGGCCCTTGCCATCACCAGTTCGGGTCACTACATGGCACACCATCCTGTGGTCACACAAGGCTCATATAATAGCCTCTTGACCACCACGTCACCTCAAGGCTTCCCAGCGCCCGGATACTTTTACGCCCAGCCATATGGGCATGGCCACCAAGGAGGTGCTTTCCACAAGAGCTCAGCAATGCAAACCGGGATGGTTTTTGGTAAAGCGCAAGTTTATCTCTGCAACAGGGCTCTGTGGCTCACGTTTCACAGGCACCAAACAGAGATGATCATCACTAAACAGGGGCGACGAATGTTTCCATTCCTGAGCTTTAATATATCTGGTCTTGATCCGACGgcaaattacaatatttttgtgGACGTCAGTCTCGCTGACCCTAATCACTGGCGGTTCCAAGGAGGACAGTGGGTACCCTGCGGCAAAGCTGACTCAAATGGGACAGGGAACAAGGCCTACATGCATCCAGACTCTCCGAACACCGGCGCGCACTGGATGCGTCAAGAAATTTCTTTTGGAAAACTGAAGTTGGCAAATAATAAAGGGGCATTGGAAAGTGCAGGGCAGATGGTTGTCGTTCAGTCCCTCCATAGGTACCAACCCCGTCTTAATGTGGTCGAGGTGCACGAGGATGGGGCCGAGAACGCCAGTCAACCCAGACAATCATTTACGTTCCCCGAGACGCAATTCGTTGCAGTCACAGCATACCAGAACACAGACATAACACAGCTGAAAATAGACCACAATCCTTTCGCAAAAGGTTTTCGGGACAATTATGACAAAATCTACACAGGCTACGATAGTGACCGGTTGACGCCATCACCGAGTGACTCTACCTACGCTCAGTTTGTGCCCGGTGCCAGATATGCTCTTGCTAATTCTTTCCTTCAGCACCAATTCGTCAGCACTTATGCCAAGTCCTGTTTCCGCCCTAGCGCAGGAGCTACGTCTGGACTAGACTATAACCTTCCCTTAACTAACAGCATGCTGTCACCGCAAACCAGCGAGGAGGACACGATGGCGGCATCCCCGAGATGGTTTGTGACACCGACAAACAACAGACTGGACTATGCCTCCCGCACAAATGACGCGACTGGAAACACGGCCACTTTGCTGTCATATGCAGCAGCTGGAAAGGCCCTACAGCTGTCCGCAACTGACAGTTCGGGTAGAGCCCTTGCTTATTACGCAGAACCGACGGATTTTGCGCGTACCTCACCCCAGTATTGTGGTGCGTCTAGTCCGGCTCTGTCCTGCTGGACTAATGGACACGCTATTGGTACTGCGAACTTTGACGAGGTCCTCTCACTTTCAAAGGAGAGTTTACCAACGGGTGTCTCTGAAGACGCAAAACCACAAGATATCTCGGAGTCTAGTTGGATAGAGACATAAACTGAATTGAAGAGATATCCCGTCCTAGGTTATTGGCATCAACGAGAACTGTCTAAATACCCACCTGGACATCGTTCATTCGTTTTTTTCATTAGACTGCATTTTTGGATTAGCCTACAGTGGGCTGTGGATACGACTGAAGTATTAAAATGTTAGCAACAAAATAGTCTATTTAAGCTATAATAATGTATATATTTAACATTAGCTGTAGTCCTACTCTAGATGTTTTCATTGAATCCTGTTTTCTAATTTGACTGATTTGATTGATTTTTGATTTGTTGAATACATTTTAGGAAAATGTTCATGTCTTAGCCTGCATTGAGTTTCATTGGCATTATGTTTTATTGTGCTGGCTTTAGTAGGCTATATAGGATCCACAATGTATTTTActtgtgcaaaaaaaaaaaaaaaacaaggttctGAGCTATAACAACTGTACTTAAAGTAAGTAGTCCAATGCTTCAAAACACAAAGGACATATTCATAAATCAATACCCAACGCAAGAAGGTCAAGAGGGAATTTGTTGTAGTCTTTGATAGGATGTACACTAAGTCATTATCTAAAAATATAAATTCGATTAAAAGCAGATGGATAAATTGCAATTCCTTTTCTCTTATACCTGGTATGAAGGTTTATTACTGCGGTTGCTGCTTTGCTTGCAGATGCGTAAACAATGGAGCAAACTCCAGATGAAAGATATTCATGAGGACCACAATGGATATAAATAATAACTTGTTTTATAATCCTTGATAATGTttaatgtgtgtattgttgtactCACATAGCTGATTCAACatatgtattttacatttgtCAAATAACTCATTTATTCGGCGACTCTTGAAGTcttctttaaaaataaaatattttagtgttaaagtaactgtccagtgtttccagatttctatgaaatatgacctataattgacaatatgagtgaaatactTTTTATTTCAAAAGATAATAATTAAATATGTTGAAAATAAGCTTTTCGGTGTttgaatggtgtgggcataccccaataACACAATGGTGGGGGCATATTAGTGGGGGTGTATACAGGTCATTAAAATTTTTAATGACAAGTCAACCGCTGATTGGCCAACTCCACCAATGAGCCAACCTGACTTTACATTATATGCGGAAATTGTaagcatttttaaaatgttttttttttctcaaatgtaTGCTTTGGCGTCAAATGCGAGTATAggacgagtcaacaacattatttgagtATGAGCTAACAAAAACCTTTAAAAGTGACATTTTCACTGGACTTTAGTTACTTTAACCGTCATTGAGGTATTTAATAAAAATTAATATCGGTTAGCCCAGAACAAAAATCTTGCGCAATTTGTTCAGTTGTGTTTACATATTTAAATATAACGTACATTATATGCATAGAGCTTCCTATTGGTTGTTTATGATCATTTCCAAGTGGGAAACTCGGCCAAACTGGAAGTTTACGAGTTGTTTTTCCAGTAGTCTTTCTATGAGAGATTAACAGAAAGTAGTCGTGGCCCAATCCCAAACCAGGGACTGTTTACATAGCAGGTAACGTGGCAGGTTAGAATTAACATAACAGGCTAGGAgaatgaggttaaggttaggaaaagagaGGTTGACAACTGTAGCATTGTAGTTAAGCCTAAACAACTGTTTTCCCCAGACACTGTCCATTAGATGGAGCTGTAGTAGACCTACTCAATCTAGTCACAACGGTAGAAACTAAACAGACCATCAATCCTGACAGACCATCAGTGACAACACGTCAGGcatttttttacttgagaaatactgcaccaaacacacAACTGACCGACTAAAACCTGCAAAAACGTCCAAATTAAttacagatttaaaaaaatatgtattctcACTATTTTGAAAAAGTATTGAGTTTATTCCTATGGTGACCcatgggggacaaacatcatGAACGGCCACATCGAACCACACCCCCAAgaatgatttttttatttttaaatgaatgAGCAACAGAAACACTGAGCATTCAATTGCTTTTTAGCCTAATCAAAAAGGGGTGAGTATCCAAAAATGTAATGGTTTGCTGTCAAACCAGCCTCCAAAAAAAGCTAAAGGGGATCTATAAAGATTTGCTATTGCCCATTGCTACTAGAGCAGCCCTTCCCCAAGACCAGCCTTCTGACTGACTTCCTGAAGCAAGGCCGCTGGAGAGGCCCATTGGAAACATCGGTCTACCATTCACTGCTCAACCTGTTGTGAAGATGTCAGGTGTGAATCAAAACTTGACTGGTTTAGGCTACACTTATACTGTTTAATTGCCTATACAAATAACAAACTTTTTTTTGGTAATCATCTTCAATTGCATATCCTAACTTTGGATTTCTTACCAGGTCATGGCTTAAGTTGTTCAGACATCTTCATATACACATTGTGGCTTAGTTGGAAGAGCATGACGCATGCAACGGcagagttgtgggttcgattcccatgggggaccagtacgaaaatgtatgtactcactactgtaaatcgctctggattagagcttctgctaaattatGTAAATGTATAAATACTTATCATATACTCATTTCGGTTCCTCTGGGGCTGGACCAAGAGCAGTTTATAGTGCTGGAAGGAGACAATATATGGACTTGATCCTGCCCTTCAAAGGGCCTTTTCATACACTTTTTGTTGACATTCTAGAATGTCATGTCAAAAATGTATTCGTTTCCCCTTTACTGTCTGTTATCTAGAATTTAAATGAATGAGTGCGCACACGCATTTGAATCAGGAAATCTCGATTGTTGCATAGAACAACAGTGCAGTGCAATTTCATCGTGGTTATGCGTGTGCCTCTTG

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746796 lncRNA downstream 56783 20892069 ~ 20892347 (-) True G1525597
TU1746477 lncRNA downstream 200692 20748190 ~ 20748438 (-) True G1525312
TU1746462 lncRNA downstream 219978 20728920 ~ 20729152 (-) True G1525297
TU1746444 lncRNA downstream 233743 20715175 ~ 20715387 (-) True G1525279
TU1746433 lncRNA downstream 242049 20706677 ~ 20707081 (-) True G1525268
TU1746864 lncRNA upstream 68501 21024346 ~ 21024693 (-) True G1525645
TU1746865 lncRNA upstream 68972 21024817 ~ 21025196 (-) True G1525646
TU1746868 lncRNA upstream 74188 21030033 ~ 21030807 (-) True G1525649
TU1746869 lncRNA upstream 75363 21031208 ~ 21031411 (-) True G1525650
TU1746870 lncRNA upstream 78181 21034026 ~ 21034260 (-) True G1525651
XM_021571242.2 mRNA downstream 1744 20900502 ~ 20947386 (-) False LOC110495804
XM_021571244.2 mRNA downstream 1744 20900502 ~ 20947386 (-) True LOC110495804
XM_036952253.1 mRNA downstream 1748 20900502 ~ 20947382 (-) False LOC110495804
XM_036952254.1 mRNA downstream 5289 20900502 ~ 20943841 (-) False LOC110495804
XM_021571239.2 mRNA downstream 86129 20855424 ~ 20863001 (-) True zgc:92027
XM_021571254.2 mRNA upstream 34 20955879 ~ 20966920 (-) True LOC110495808
XM_021571250.2 mRNA upstream 12402 20968247 ~ 20976867 (-) False LOC110495807
XM_036952257.1 mRNA upstream 12402 20968247 ~ 20976867 (-) False LOC110495807
XM_021571249.2 mRNA upstream 12402 20968247 ~ 20976907 (-) False LOC110495807
XM_021571252.2 mRNA upstream 12402 20968247 ~ 20976911 (-) False LOC110495807
TU1746271 other downstream 377263 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 1219062 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 1223599 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 1372030 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1785004 19143985 ~ 19164126 (-) True G1524473
TU1748552 other upstream 1306211 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 1916200 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2203713 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 2525695 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 2586761 23542606 ~ 23543493 (-) True LOC110495852

Expression Profile