RNA id: XM_021571249.2


Basic Information

Item Value
RNA id XM_021571249.2
length 2647
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110495807
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20968247 ~ 20976998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGcaagggcaaaaaccaaaacgtgcagcCATGGAGGGGCCCAGGACCAGGTTTGGTAAAACTCTGGTCTAGAGAACTTTACCTGTCAATTGGCAGTGGCACACACAGGTGCCGAAGATTTGATATGCAATTTACAGCGCGTCAGGCACACATCCGAACCAACTGGTTTTGGTTTGTCTTTTGAGCATGACGGACGCAAGATCGGCTTTATCAGAGCAGGACATTCTAAAGAAAATAGAGGAAACAAGAAAACGATTCCGTATCGAATATGCACAAGACTCATCAGACAAGTATGACTCCAGGGATGTGGACAGGTTATGGAAGGATGATGTTTTGGTTGATGGTTATCTGGAGTGGCGCCACTTTGAGGTGGAGGAGACCTTGAAGATGATCGATGAGAGTCTTCAGTGGAGAAAAGAATTCAAACTGAATGACATCAACGAAAGCTCTGTTCAAAAGTCTCTATTTGAGTCTGGCATGCATTATCTCCATGGCTATGATAAAGAGGGCAACAAACTGTTCTGGTTCAGGGTTAAGCTGCACGTGAAGGATGTGAAGATGTTGACGGAGAAGAAAAGGTACGTGGCCTTCTGGTTGGAGAGCTACGCCCGGCGGGAACCGGGGATTCCCCTCACCGTGATCTTTGACATGTCCGAAGCGGGTCTAAGCTGCATTGACATGGATTTGATCAAATATATAATCAATTGCTTCCAAGTGTATTACCCTAGATTGCTTTCCAAAATGCTCATGTACGAGATGCCATGGATCATGAATGCGGCATGGAAGATGGTGAAGAACGTGCTCAGTCAAGACGCCATCGACAAGCTGAAGTTTGTGTCCAAGAGTGACATCCAGAACTATGTTGATAGGGAGAACCTCCCGTCCTACATGGGAGGAACTGACCCATTCAAATTCAGTTACCCACCGTTGCCTGATGACGTCTTCCAGAACCCCATATCAGAGACTGGACAAGAGGATGACACTGAGTCAAAGGATGATGACCTGGAGGCCAAGGACACCCTGGAGCCGAGCTCTCCTATACTCAGAACCAGAAATGTATACTTGGCCCAGGATGGGGACAATGATGGCTCCATCAGATGGAAAGGATCCCGTAGGCCAACCGTCACTTTCAAAGGCACCTTACTCTATATCAGtCCTGATGATGAGTTGTGCTTTGGCCACAGAGAGGGTGAGAAGAGATGTCCGATCATGCTTAATAATGTCACCAAAAACCAAGTGGCCTTCAAGGTGCGGACCACAGCCCCAGAGAAGTACAGGGTGAAGCCCAGCAATAGCAGCTGTGGGGCGGGCAAGAGTATGGAAATCACTGTGTCCCTGCATGGAGGGTCCCTGTGCTCTCCTCAGGACCGCTTCTTAATCATGGCTGCTGAGATGGAGCCATGTAGCGGTGGGGGGAGCACAGACCTCGCCCAGTTCTGGAAGGGTGTCCCAAAGGCTAAAATAATGGAGCACAGGCTGCGGTGTCGAATGCTAGAGGGCATCAAGTCGGTACTCAGCCCTGTGACTGACAGGTCTCACAAAATGGAGACCAATAGCTACCAAGACATGCACACCACGCTCCTTCAGTTGATGGCCAGCAGCTCCAGGCTGGAACAGAAGATGGACCACTGCCTGTGGTGGCAGAAGCTCTTGACTGTACTGGTGACTACACTGACGGCCTTGGGCTTCTCTGCCCTCTACATACAGTACACTGGGGAGTGGCCATTTTGAAACTTTCCCACGGTGGAGGAAGAAGACAGAAGGACCAGTCACAGTGGAGTCAGGATGAAAGTCAATTTCTGATTGGAGCAGAAATATGAGGAACTGCTCGCAATCCACTCTATGACCTTTGGACACTGAATATAATTATATTTCTACACTAtcaggttggaataatactgtgaaattatgaAAGTAattataatgcccttttagtgtaagacgTGTTTGAGTGGGTGATGGCTCGAAGGGATCTAGCTTTCGTCAAGTTAACGTCAGActtgacttttcgtagcaggttaggagaattaggttaaggttggCAACTTTTTacattaatttgacaaaagctggagcCTTTCTCGCCATGACCGTTTTGATGgtatggagttttggcctgcctggtgacctCAACAGGCGGTAAATtatttaatagaccaataagaaagagggttgcaaacttctctgccaataacagctagttttcagttttcccgtACCCACTCAGACCATTCCCaggcagtcctagcaaaattattgcttgagaaatttcactttgctaaaaagctatttttgtttcttttttgaccatgttttcaattaaaatcacagtaaggtacttcatttTTACCCagaaaatgatttgatattgagataaaaacagctgcattggacctttttaACCTATCTTCTGAATTATGTCTAACTACAACTATTTACTATGGGTTTATATGAATGGAAGACCACAAATAGAGTTTTATAGCCAATATGTCGTCTTGGTGTTTATACAGTGTAATTTACATTAGTTGTTACGTTGTAAAAGTCCTGTAGCATTTTTCCTTGATTCCTCTGCAGAAGCAGCCAAATACCAACATACACTCTGATATAAACACATTTATTGATTTGATTAAAAGATGACActcactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746796 lncRNA downstream 75900 20892069 ~ 20892347 (-) True G1525597
TU1746477 lncRNA downstream 219809 20748190 ~ 20748438 (-) True G1525312
TU1746462 lncRNA downstream 239095 20728920 ~ 20729152 (-) True G1525297
TU1746444 lncRNA downstream 252860 20715175 ~ 20715387 (-) True G1525279
TU1746433 lncRNA downstream 261166 20706677 ~ 20707081 (-) True G1525268
TU1746864 lncRNA upstream 47439 21024346 ~ 21024693 (-) True G1525645
TU1746865 lncRNA upstream 47910 21024817 ~ 21025196 (-) True G1525646
TU1746868 lncRNA upstream 53126 21030033 ~ 21030807 (-) True G1525649
TU1746869 lncRNA upstream 54301 21031208 ~ 21031411 (-) True G1525650
TU1746870 lncRNA upstream 57119 21034026 ~ 21034260 (-) True G1525651
XM_021571254.2 mRNA downstream 1327 20955879 ~ 20966920 (-) True LOC110495808
LOC110495806 mRNA downstream 12402 20949130 ~ 20955845 (-) True LOC110495806
XM_021571242.2 mRNA downstream 20861 20900502 ~ 20947386 (-) False LOC110495804
XM_021571244.2 mRNA downstream 20861 20900502 ~ 20947386 (-) True LOC110495804
XM_036952253.1 mRNA downstream 20865 20900502 ~ 20947382 (-) False LOC110495804
XM_036952264.1 mRNA upstream 41639 21018546 ~ 21021652 (-) False LOC110495812
XM_021571257.2 mRNA upstream 41639 21018546 ~ 21022145 (-) False LOC110495812
XM_021571262.2 mRNA upstream 41639 21018546 ~ 21022156 (-) False LOC110495812
XM_036952265.1 mRNA upstream 41639 21018546 ~ 21022156 (-) False LOC110495812
XM_021571260.2 mRNA upstream 41639 21018546 ~ 21023154 (-) False LOC110495812
TU1746271 other downstream 396380 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 1238179 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 1242716 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 1391147 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1804121 19143985 ~ 19164126 (-) True G1524473
TU1748552 other upstream 1285149 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 1895138 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2182651 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 2504633 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 2565699 23542606 ~ 23543493 (-) True LOC110495852

Expression Profile