RNA id: XM_036952258.1


Basic Information

Item Value
RNA id XM_036952258.1
length 4176
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110495811
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20980049 ~ 21013013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATAGAATGGGCGCTCAAAAAATCTGCCATGATCGACGTTTTCATCGCCAAATTGGGATTGCAAGTGACATACGGCTAAAGCGTTAGCTGGCATCGTTTAGGGAGCACTAATCTGTGCAAAATCGGACAAGACCTTTGAATCTTGTAGCCTAGTGTATACAGAGGAGCTAAGCttgcaagtgagagagagagggtgagagagagagggtgagggagggagagagagagggtgagggagagagagagagagaaagagagagagagagagagagagagagagcaaagtcAGAATCCAAAAGCCAGGGAGAAAAAGTATTCAAAGGAAAAGATTCCAAATGGATGGGACGAAGCCAGTCATGGAGTCTACCACAGAGGAAAAccaagaggagagggaagaaagcAAAGGTTGCTTCGAATGCTGCATCAAGTGTCTGGGCGGCGTGCCCTACGCCTCGCTGGTGGCCACCATCCTCTGTTTCTCGGGCGTGGCTCTGTTCTGCGGGTGTGGTCATGTGGCGCTGACCGGCACACTGACCATGCTGGAGAACCACTTCTCCCAGATGACCACTGACCACGCCACCCTCACCATCgtGATCCAGACCATGCAGTACGTCATCTACGGCATTGCCTCCTTCTTCTTTGTTTATGGGATCATCCTGCTGGCTGAGGGCTTCTACACCACCAGCGCCGTCAAGAAGGAGCTGCAGAGCCAGTTCAAGACCACCGTGTGTGGCCGCTGCATCACAGCCACGtTTGTGTTCCTTACATATATCCTGGGCCTGGCCTTCCTGGGGATCTTTGGCTTCTCAGCCATCCCAGTCTTCCTCTTCTACAACATGTGGACTACCTGTGCTGCCATGAAGTCCCCCATCGCCAACATCACCGATCCGGACTCCATCTGTGTGGACGTCAGGCAGTACGGTATTATCCCATGGAACGCGACACCCGGCAAAGCCTGCGGATCTACACTAGGAGACATCTGTAGCACCAGCGAGTTCTACCTGTCTTTCCACCTGTACATTGTTGCGTGCGCTGGGGCAGGCGCCACCCTCATTGCATTGatcCACTATCTGATGATCCTGTCGGCGAACTGGGCCTACCTGAGGAGCTCCTGCAACCAGAACGAGTACCAGGACATCAAGACAAAGGACGACGACGCGGAGGAGGGTGGCTCCAAGGAGGGTCTCAACTCCTCTTACTCATAAGAACCGGCCAACCACACTTCCTCACACCTAACCTCCAACCCCCTTCTGGGTAAAACCAACACCTGGGTCTCCTTCACTATGGGCGGTGTTCTGACTTGAGATATGTGCGCTCAACTCAAATTGTCACACTTTGGCTACATTTACACAGGGAGCCCAATTCTGATTTGTTTCCCCTCTAATTGGTCTTTCGACCAATCATATCTTTTCACATCAATTCTTTTTCAGAACTTatctgattggttaaaagaccaattagtgaagaaaatatcagaattggactgcctgtgtaTATAAAATGCAGCCCATGTCTTCCATTGACATCAATGGACAAGTCTGAGTTGCGCACACTTTTCTCACCTCTGAATCAGGTCCTTTGTCCAAATGGGAGCAAACGTTTTCAAACGGAACAGGTATATAAAAGTTCCTATTGGATGAGCTCAGGTTAGGTGGTACCTCTTCCTGTTTGCGAACGTTTGCTCTCGATTGGACCGTTATTGAGTGCAACCCTGCTGCCATAGCCTAACTGctctgagccaatcacagcacaGCACTAACCCAGCTCCTAATAACCGCCTAACAACAAAGTCACTGTCTGCACAACTCCTGAGGAAGCGTGCCACAAAATGTCCTGTTTTTTGGTGTtttatatatatgaatatattgtgtgaatgtgtatgtatgaatgtttttttttttatactacGAAGTATGACAGGTTTACTATTATTATATTCAACTGGTCTTCTCTTATCTCTGGTATTTTATCACAACCCTGTTTTACCTGATTTAGTTTTTTGCTTTTTAAAAAAATGGAAATGCTTGATACGTTGCACTATTTAAAAATAGAAAAAAGTAAagtagaataaaaaaaaaaacatgaatacatTACATACACAGCATCTCAGGGTGCCTCTCTTAGAAAATATTCCTACTATTACGTTAACTTTCCCATTCCTTTATTGACATCCAGCTACTTCTGTTGAGTAATTCTTCATTTTGGCCTGAGGAGAAAAACGTGTGCTGTACCCTAACTGGATTGGACACATGCACTAATGTGACTGTTGGCCCAAAGCAGCAGTTCTGTCAGCAGCTGTCTGCAGTGCTAACGCAATGCTTTGACCTTCAGATGAACCtctggcctggtcccagatctgtttgtgctgtcttgccaactcctatggtcattgtcgtGTCATTATGACCATAGGAATTGGCAAGACGGCACagactgatctgggaccaggctagtgaaCCTCCACCTAGCCCTCTGCATGGCAGGTTTTCTCTGGAAACAGCCTTGCTTCTAAACCCACAGGACAAACCAACACTCAAGGTCAGATTGCCTTGTTCTGTTTGTAAGTGATACATTATATATACCTCAGGTACTAAACCTAAATTAAAAACTCCactagactggtcccagatctgtttgtgctgtatcgCTCCTATGTTTGGCATgataatgaccataggagttggcaagacagcacaaatagatctgggaccaggcaaacACCTTACTGCTTAAGCACGTGCTTGTTACAAGGCAAGGCCACAGCTGAAGTGAACTTAGCAAAAGTCCCAATGTTTGTTCATTGTACACAACTGTGAAGGGAATCATACGTTCGCTTTCCTCCAGACAAGTCCACCCTTTAAAGGGGTGAAGTTCACCTGTAAATATACGGACCGCCCCAAAGGAAGTTCCATTGACTGACATCTCCTGAATGTGGAGAGCACGGTCAATGTTTTACCATGCTATTTTACCTTTTGATTACCAATATGTAAATGTTTCCTTTTGGAGTATATGTTTAGCATCCTATTACTAGTTCTTCATTAAATATAATAGTAATGTGACATCTTTTAAAACGGTATGTTGTGAGAAGGAAGCAAGTACAGAGTCATGATGGCGGTGGTGCTTGTATTGTGTACATTTTGAAATGTGGAGGAAAAAAATGTACCAAATGGTTttcaatgttttaaaaaaaaaatcagttttagACTGCTGAATCTTTCCCTGTGCTAAAGTAATGACGAACTTTATTTGTGATTATTTTACTGTGGCAAGCCAAATGTAAGTGACTCATCTCATATTTTTAGGCCTGTTATATGGACAGATACCATTTGGATGTTTACAATATAACAAGTCAGgaatgttcttttttttttttttcaatatcaTTTATTATCACAACCGATTCTATAATAATGATCACTGACTAGTTCAAGTGCTccgggactataaggttctatctgcattttAGTCTAAATTGAGTTAGtgacatagccttgttctgttcGATGTTCTCTACCCACATACACCATACTCTAAATACCCCAATTCATGTTAAGTTCAAAAGAATTCAAGGTAAAATGGCTGACACCGTTCAAAACAACTAGGGCTCGAAACAGTAAAACCAATTACCTCAGAATCATCTTTTTGCAGAAAGAACCTTACAGTCCCAAAGCTCTCGGGTGATCTTCCTCGCAGCAGTGAAACGATGATTCTTTTAACTTTCATATGAAAAGGCATGTCGGTATTGTCCACGTGTGCAAACGTCTAAATACTGAAAAAAGGACTATATTCCCATGTGTGTTATGTTTGATATAATACAGTGTGCTTTGCCACCAGGTTGATGTAGGCAAGGGCATGTGCCGTTTCATATAAGATGCGTGTCAGTCAGGGTGTGTTGTCGTTTCCTCGTTATTGCATGAAGGCGACATGACTGTCTTTGCAGTTTTTCAGGTGATGTGTCGTCAATTGTACTGACAACTATGGTAGGCAGCGTTTGCCCCCACTcaactctctttttttttttaagatatcCATTGTACCTTGGATGACATTGGTCCCTGTAGTCGTTTCATCATTGCTTTTCTTTTTAAAAAGTTTCAAATAGTTATGATTCCTGTATAGTGATGATTTTTGTAACCTTCTCTAGTAAAAACCGATATTTTTTATTATCGTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746627 lncRNA upstream 31238 20955877 ~ 20957111 (+) True G1525436
TU1746586 lncRNA upstream 88465 20899333 ~ 20899884 (+) True LOC118941068
TU1746563 lncRNA upstream 91227 20896918 ~ 20897122 (+) True G1525392
TU1746559 lncRNA upstream 94206 20893493 ~ 20894143 (+) False LOC118941068
TU1746557 lncRNA upstream 95327 20892687 ~ 20893022 (+) False LOC118941068
TU1746588 lncRNA downstream 8756 21021769 ~ 21022152 (+) True G1525406
TU1746651 lncRNA downstream 12890 21025903 ~ 21026132 (+) True G1525460
TU1746653 lncRNA downstream 14956 21027969 ~ 21028343 (+) True G1525462
TU1746654 lncRNA downstream 16636 21029649 ~ 21029900 (+) True G1525463
TU1746655 lncRNA downstream 17026 21030039 ~ 21030542 (+) True G1525464
XM_036952263.1 mRNA upstream 9090 20969280 ~ 20979259 (+) False LOC110495810
XM_036952262.1 mRNA upstream 9090 20976499 ~ 20979259 (+) False LOC110495810
XM_021571255.2 mRNA upstream 9090 20976683 ~ 20979259 (+) True LOC110495810
LOC118941068 mRNA upstream 88242 20890709 ~ 20900107 (+) False LOC118941068
NM_001124698.1 mRNA upstream 98057 20887451 ~ 20890292 (+) True gcg1
XM_021571270.2 mRNA downstream 163612 21176625 ~ 21257700 (+) False LOC110495817
XM_021571269.2 mRNA downstream 163616 21176629 ~ 21257700 (+) False LOC110495817
XM_021571271.2 mRNA downstream 198739 21211752 ~ 21257700 (+) False LOC110495817
XM_021571275.2 mRNA downstream 284183 21297196 ~ 21333742 (+) False LOC110495818
XM_021571273.2 mRNA downstream 284184 21297197 ~ 21333742 (+) False LOC110495818
TU1746485 other upstream 230937 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 504636 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 681445 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 753169 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 912037 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 1586400 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1586484 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 2145820 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3507722 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 3991748 25004761 ~ 25005609 (+) True G1530367

Expression Profile