RNA id: XM_021571260.2


Basic Information

Item Value
RNA id XM_021571260.2
length 1232
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110495812
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21018546 ~ 21028291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTACAGTGAGGTACAGCAGAATACaatgtaggggagagtgggataAGTTCGAGCCAAAGGaTAGGCGTGACAAACGATCGGTCATATGAGCGTCAGTAGCGCCATGTCACCGGGAAACCTCGGCCGCTTGTGAGGATTTTGCAAAGGGATGGCACCGCCGAAGTACATTTTAAACAGCAAGGTGCTGAATTAGGCTATGGTTTGCCCTGATACGTAACGGTAGCAGCAGCGCTTCCCAGACCATCTCCCCCCTAGCCAGCTACTCCACCAACCCTTCAGCCCAGGCCCAAGCTCAGCCATGACAGCCAAGTCATCCCTGCTCAAGGTGATCCTCCTTGGGGACGGAGGCGTGGGCAAGTCCTCTCTCATGAACCGCTATGTCACCAACAAGTTTGACACGCATCTCTTCCACACCATTGGCGTGGAGTTCCTAAACAAGGAGCTGGAGGTGGACGGGCGCACCGTGACGCTCCAAATCTGGGACACGGCTGGCCAGGAGCGCTTCCGCTCACTCCGGACACCCTTCTACCGTGGCTCCGACTGTTGTCTCCTAACCTTCAGCATGGATGACAACCAGAGCTTCCACAATCTCAACAACTGGAAGAAGGAGTTTGCCTACTACGCTGATGTCAAGGAACCCGAGAAGTTCCCATTCGTGATCCTGGGTAATAAGTTGGATGTGCCAGAGAGGCAGGTTTCGGGTGAGGACGCCCGCCAGTGGTGCCGCGAGAACGGCGGCCACCCGTACTTTGAGACAAGCGCCAAGGACTCTACCAACGTGGTGGCGGCGTTTGAGGAGGCGGTGAGGAGGGTGCTGGCGCAGGAGGAAGGGGGGGAGCACCTCATCCCGACGGACACAATGGACCTGCACAGGAAGCCGCGCTCTGGCGCCTCCTGCTGCTGAGATGTAGTGGTGATTACCTTTATTTGActcttaaaggcccaatgcagctgtttatctcaatttaaaatgggcaaaaatggatttttagcaaaaaaatatttctcaagcaagaatatGACTAAGACtgggaaaactagctgttattggagGAGGGGTTTGGAActgtctttgttattggtctattaaccaatcaACCGCATAGTGATGTCACCTTGGAAAGCTGAAACTcccgcccatgcaaacctgctgattataatgtcctgtgtagattgtattttcaaccaccaactatcaggaaataaacTGATCACATTTTTTCACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746796 lncRNA downstream 126199 20892069 ~ 20892347 (-) True G1525597
TU1746477 lncRNA downstream 270108 20748190 ~ 20748438 (-) True G1525312
TU1746462 lncRNA downstream 289394 20728920 ~ 20729152 (-) True G1525297
TU1746444 lncRNA downstream 303159 20715175 ~ 20715387 (-) True G1525279
TU1746433 lncRNA downstream 311465 20706677 ~ 20707081 (-) True G1525268
TU1746864 lncRNA upstream 1192 21024346 ~ 21024693 (-) True G1525645
TU1746865 lncRNA upstream 1663 21024817 ~ 21025196 (-) True G1525646
TU1746868 lncRNA upstream 6879 21030033 ~ 21030807 (-) True G1525649
TU1746869 lncRNA upstream 8054 21031208 ~ 21031411 (-) True G1525650
TU1746870 lncRNA upstream 10872 21034026 ~ 21034260 (-) True G1525651
XM_021571253.2 mRNA downstream 41548 20968247 ~ 20976998 (-) True LOC110495807
XM_036952255.1 mRNA downstream 41587 20968247 ~ 20976959 (-) False LOC110495807
XM_036952256.1 mRNA downstream 41609 20968247 ~ 20976937 (-) False LOC110495807
XM_021571251.2 mRNA downstream 41612 20968247 ~ 20976934 (-) False LOC110495807
XM_021571252.2 mRNA downstream 41635 20968247 ~ 20976911 (-) False LOC110495807
NM_001124350.1 mRNA upstream 47728 21070882 ~ 21073264 (-) False LOC100136027
XM_021571265.2 mRNA upstream 52031 21075185 ~ 21088022 (-) True LOC110495813
XM_036952267.1 mRNA upstream 66199 21089353 ~ 21107524 (-) False LOC110495814
XM_021571267.2 mRNA upstream 141424 21164578 ~ 21173972 (-) False LOC110495815
XM_021571268.2 mRNA upstream 141424 21164578 ~ 21173972 (-) True LOC110495815
TU1746271 other downstream 446679 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 1288478 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 1293015 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 1441446 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1854420 19143985 ~ 19164126 (-) True G1524473
TU1748552 other upstream 1238902 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 1848891 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2136404 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 2458386 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 2519452 23542606 ~ 23543493 (-) True LOC110495852

Expression Profile