RNA id: TU1746965


Basic Information

Item Value
RNA id TU1746965
length 1851
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC110495817
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21176625 ~ 21257700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGGCAGAGGGACAGATGGCAGATCTGGCAACTCTTGTCCTCGGAAAATGCAGACACACTCCCAGAGACACTGGTGTAAGCTGGACAATCGGACCGTGGGGTGATGCTAaccatcccttcctccatccctcccctctgtcctcccctctgtccttcccccCAAACATGGACGCCATGGGGTTGTTTACATGTGCAGCTGCTGCCTATACTACGGACTTGGTACGGAGTCACAAGTGTTTCCTGTTTGCTATGTATTGATCCGCAATTGATGTTGTATCCTGGGGACCCCTTTGTTATTAAATACTCTCTCTGAGCTGTTTGAGAGGATCAAAACTAACTGTCCGCAAGACATACCTCAAACGTCAAGTTCATCAATTTGATTCACAGTTATTACTGCATGTCCACATTTCGATAAGGCCCCAGTTTAAATTGAACTGAATGTAATATGTAGAGGTGACTTTTGAAGACAGGAAGGTTTAACATTTATGGCAACGATTGATAAGCTACAGTCAATTTACATGACCAATCCTACCCTTATATATTTACTGAAGTCATCATATATATTAGTGATCGCTGCTAAATATTCAGAGTGTATTTACTTGCTGATAATATATCCCGGTAAGTATCGTACGAGTTTGTATGAACAGAGTTTTATTCAATGTCAGTCACCAAGTAACAGAGCCCACAGTACTGTTTTTGCAACAGTTTGTATATAAGCATTCTAATGCATTTTAGGTCGACCTAGCTAAACAAAAACCTTTTACAGGCAGTCTAAATGTTTGTGTCGTGTGGTTTTAACACGGTTTAAAAAGTTAACCTCTGTCAAAGCTTTACTGAACAAAATTGGGTTCTAAAAGAAAACTATTATTGCGATCAGTACAGTAATGTGCCACGTGCCAaagttcctttcctctctcttttcatcaaATGTTTTTTGGCCGTCTATAAAGTCTCATCTGCTTTCTCTCATTCCGTAGTTAGCATTGTTCTTTTAGCTTTTGGATTTCACTTCACCATGGTTGCTACAGCATGGCTTATCGTACAAGGTCAAATCAACATGATTCCAATTCCAATGATCTCCCTCATTCCATTAGGTGGTTGATGTCAAGGTTATGGCTGCATAGGAGTATTTTTGGAAGCAGATTAAAAAGACAAGTTCATTGCTTGCCTGACAGGTTCATTGCTTTACCTCTCACTGTATTTATCTGATTGTTATGGGATTTCAACTAGATATTTGCACTTACTCTACTGTGGACTCTGGGAATTGCCCATTTTATTTTTGATTCCTCCttttcaacaacaaaacaaacacgtCTCTTGCTTTTGTCATTACGTGCACTGTCTGCCTCTATAACTTACCTTTTTGCTCCCAAATACATTAGTAGTCTCCAATCATTTCCCAGTTTTGTGGATATTTGCTGGCAAATATTGCACACTTTCTAAATGGGAGTTTGGGTGGTTTATGTTTGTTTCAATCCGTCCGCATGTCAGAGGAATTTGATGTGTGATAGACATTGGAATTATTTACAAGGATTCACACATTTCTACATGTCTTTGCAGTGTCCCACAAAATGACAGTACTTGTTTCGAAAACGTGTCCCATCTTTACTTCTATAAAAAAAACGCTTTCAACAGCTTGTGTTTCTAAGCACTATTctgaatgtctgtgtgtttggagTCAAGTATGCCATAGATCCATGCTCTTTGAAAATGATTTGATACCCCACATTGCTTTGTGGTTGTCAATGATTTTTTTTGTAGCATGTCatccaatacatttttttttcttaataACTATTATGTCTAACAATTTTTACTCCCCCAAAAAATCTACAAACACATGTATAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1747011 lncRNA upstream 10111 21244826 ~ 21245657 (+) True G1525791
TU1746941 lncRNA upstream 100337 21155013 ~ 21155431 (+) True G1525722
TU1746700 lncRNA upstream 161504 21093863 ~ 21094264 (+) True G1525502
TU1746698 lncRNA upstream 165551 21089316 ~ 21090217 (+) True G1525500
TU1746696 lncRNA upstream 166632 21088918 ~ 21089136 (+) True G1525499
TU1747208 lncRNA downstream 99600 21357218 ~ 21357419 (+) True G1525979
TU1747248 lncRNA downstream 122995 21380613 ~ 21381054 (+) True G1526018
TU1747279 lncRNA downstream 144680 21402298 ~ 21402669 (+) True G1526049
TU1747405 lncRNA downstream 266514 21524132 ~ 21525982 (+) True G1526170
TU1747530 lncRNA downstream 356847 21614465 ~ 21617563 (+) False G1526294
XM_036952260.1 mRNA upstream 242755 20980049 ~ 21013013 (+) False LOC110495811
XM_036952258.1 mRNA upstream 242755 20988349 ~ 21013013 (+) True LOC110495811
XM_036952261.1 mRNA upstream 246228 20980049 ~ 21009540 (+) False LOC110495811
XM_036952259.1 mRNA upstream 246228 20988349 ~ 21009540 (+) False LOC110495811
XM_021571255.2 mRNA upstream 276509 20976683 ~ 20979259 (+) True LOC110495810
XM_021571275.2 mRNA downstream 39578 21297196 ~ 21333742 (+) False LOC110495818
XM_021571273.2 mRNA downstream 39579 21297197 ~ 21333742 (+) False LOC110495818
XM_036952268.1 mRNA downstream 39579 21297197 ~ 21333742 (+) True LOC110495818
XM_021571277.2 mRNA downstream 669035 21926653 ~ 21939273 (+) True LOC110495820
XM_021571278.2 mRNA downstream 862159 22119777 ~ 22125450 (+) True LOC110495821
TU1746485 other upstream 498356 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 772055 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 948864 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 1020588 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 1179456 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 1341795 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 1341879 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 1901215 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 3263117 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 3747143 25004761 ~ 25005609 (+) True G1530367

Expression Profile