RNA id: XM_021571277.2


Basic Information

Item Value
RNA id XM_021571277.2
length 4007
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC110495820
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 21926653 ~ 21939273 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGAGCTTTCCGTGGCTCAAAAGCATGTAAATTATAAGGAACTATGCGAAGGGTCAGTATACCAAATAGACTCTGCAGTTACACTCACACTTTAGGGGCTGGTAACTAAGCGCGCAAGAAGTTAACAGAGAGGACTGACCAGGGAGACTAATAAGGATCTACATTAATTAATTACAGATAAAGTGGAAAGGCCAACACATCCCAAAATTGCCTCGGACTAGGCTCGTGTCGGGTGGAACACTTTGCAATATCATGGAAATATCGGATTTGTAAATGCCGACAGTCTTCTACAAAAACAAGAGGGTACAAAAGTAAACGTTAGTTACACCGGTATGCCTAGTCTATTCTCTAAAGAAGATGCTGTGACGTTTAATTAAACAGTTTGAGGGCACTTTTGATGCCTCGCATCCTTACGTCTCCACATGGATCAACCTCTCTACCCCAAGCATCCTTTGGATTAGCCACAGTCTTTCTCACTCTGCACAACGGATTCAACGGACAGAAAATGCTACCCTGCATCGTTTTCCTTTGCTCATTTTTCACTGCTGCGTGTTTCCAAGACATCCAGCCCTCCAAGGCATTTCTGGCTGAATCCTGTGACTCATTGTGTACTTGTGAAGAAAAAGATGGCATCCTGTATCTTAACTGTGAGGAGAGAAATATCAGCAAGATCTCCCAAATCAAAGTGCCATCAGCTCTACCTTTCCACCTAAATCTGTACAAAAATGACTTGGTGGAGTTGCAGGCAGAAGACTTGGAACATTTAAAGAATGCCGTTTCACTTCATCTCGGGGCTAATAGCATACAAGAGCTTGAACCTGGCGTCTTTAGTGCACTGGGCTCCTTGAAGAAGCTCCACATCAACAGTAATTTCCTGGTCATGTTGAAGGAAGACACTTTTCACGGCTTGGTAAATTTGGAGTTTCTCCAGGCGGACACAAACTTCATCCGCGTGGTTGAGCCGGGGGCATTCAGCAAACTCATCCGCCTCAAAGTTCTGATCCTCAACGACAATGCCATCGAGTTTCTTCCCAGCAATATTTTCCGGTTTGTTCCACTCACCCACTTGGACCTGCGGGGGAACCAGTTACAGACCCTGCCGTACGTTGGCTTCCTGGAGCACATTGGGCGGATCATGGAGCTTCTTCTGGAGGACAACGACTGGATGTGCGATTGTGAGATCCTTCACCTGAAGATCTGGATGGAGAACATGCGGGCCCAGTCGGCCATTGGGGAGGTGGTCTGCAGCAGCCCCCAACACCTCAGGGGCACCATCCTGGCCAAAATCAAACGGGATGTTCTCTGCCCTTCTCATGCCGATATCAACTTAGAGGAGCCTTCCAAGTCACTGGACATGGTGGTCACTCCGTCTTCCAAAGTGGTAGAGATTCCGAAGTTGGAGGCCGCCAAGGACGACGCAAAGGTTCCGACACCTGCTTATGTTCCAGGGAGTCCTTGTGTGGAGCACTGTTCTTGTCACAATCACCCGGTGGCTGGGTTTTTAATGCATTGTCAGGACAGAGGAATTCAACGGATTTCAGATATTGGAATACTTGAGCAAAGCCCCACCAAGCTGGTGCTTACAGGAAATATGATTCAGAGACTGTTGAAATATGACTTTGTCACATATGACAGTTTGGAGTTATTGAATTTAGCCAACAATCGAATCGATTACGTTGACAATGAAACTTTTCTCAGCTTAAGCAATTTGAAAAAACTTTATCTCAACGGCAACAGAATTGAAACCCTTTCCGCGACCATGTTCATTGGACTCCACAACCTTGAATACCTATATTTGGAATATAACATTATCAAAGAAATTGTTCCAGGAGCTTTTAATCCTTTGTCTAATCTCAAACTCTTGTCTTTGAATAACAATctgctgactagtctcccattgcAGATATTTCGCAATGTGCCCCTCACCAAACTGAACCTGAGAAAAAATCTGCTCGTGCACCTGCCTGTTAGCAACGTGCTGGACCAGCTTGACTCTTTAGAGCAGATTTATTTAGAGGACAACCCCTGGGACTGCAGCTGTGACTTAGTCAGTCTCAAACAGTGGGTTGAGAAGCTGAGGAAGGACACAGTCATAGGTTCCATTTTGTGTCACACACCGAGAAAAGTGGCGAAGGCTGAGCTGAGAGCCCTCAGAAATGAGTTGCTGTGCCCCGGCCTAGTGACCTACTCCTTGCCCACGGACGAGGACGAGAGCGTGACAACCACAGTGGCGACTGACGGCGCTAGGAGCGGTTTCTTCAGCTCCATCACAGACTCAGTTCCACTCTCCGTTCTGATCCTTAGCTTGCTCGTCATCTTCCTCATGGTCATCTTCTGTTCGGCGGGGATCGTGGTTTTCCTAGTGCACAGACGGCGAAGGAGGGTGAAGAAGAAACAGGCGGAGGAGCAGCCGCGGGAGAGCAGCAGCCCCATCCACCTGCAATACAGCATGTACGGCCAGAAAACCACCCACCACACACTGGCGCAGAGGACCGGAAGCACCGTATACGACGAGCGCTCACACAGCCCCATCGTCCAGATCTGCCGCAACCCCACCTACTGCACTCAGCATAAAGAATATGAGACCGACCTCAATGAACTGGACGAACCAAAGCACATCTGTCgtagcatcatggagacagagaatACCTCCCCTCTCACAGGCTCTAATTTGAAGTTCAGAGCTGTGACGTCAGACTGCCCAACTGAGTTCGTAACACTCGGAGATGCGAGCTCCCTCTATAAAAACAtactagagagggagagggttagggagCTGCAGCAGCTCGGAATTACTGAATACCTCAGGAAAAACATGTCCCAGCTGCAACCAACGGTAGAAGTGCCAGTCCCAGGATCAGGACACCACGAGGAACTGAAATTAATGGAGACTATTATGTTGTCGAGACCGCGGAAGGTCATGGTGGAACAAACTAAAAATGAGTACTTTGAACTCAAAGCTAACCTACACACCGAGCCAGATTATTTGGAGGTTCTGGAGCATCAAACTGCATTTAACTgatataataatacaattaatGGTTTTATATTCAACTCGAGAAGTGCCTTGTCCAAAACTGCCATCTTATATTTTCACAGTCTAAGACCTACAGTACATATCCCACAGCGGTCTTGGACACACAAGTAATTTGTAGCacagaatgtactgtataattATCTATTTTTTAGTTATTTTGTTTTCCTATAGATAGACCGCACTTGAAGTTGCTGATATAACAGATATCTTGCCCAAATGTAATTATCGGCAAGGCAAATAGGTACTGCGGGGGTAAGTTTTTGTTACCAGTTCAGCTTAGATCTTTGGCAGGCCTCAATGTTTTGCATCAACTCTGTCAGGCTGTTTCAATCATATGCCATAATCAGCATGCTCAATGTGCCGTAGACTCAACAAAATGCCAACATGTATTCTGGGTCGCAATGATGGAGTGCACATTAGTCCTGTCGTTCATTAGATTTACCCCTTGCATTATTTCAATACCACATTTTGTATTCCAACCAGTGGAACATAGCACTTAAAAGTCCCAGTACATATATACATCATATCTTGTATCTGTAAAGAAAAAAATGCATTGCACTAATCAAATGCCATTTAAAAGATGGATCATGACAATCAACTTACTGTTCCAACAACCGTTTCTGTTTATCGTTGTTCCTTTCTTGCTACTGAAGGGGACACAACTACTGATGTGTATAAGAACCTTTTGTTTGAGTGTAATTTTTACAAATCAAAACCGACCAGTTTCTCTCAGCATGATAAATGTTCAGGATATATGTGTTCACTTTATTATTCTGATTGAGTAAGCAACCCCGTTCAACTCTGAAAATGTTTCACGTCAACTTTATTTTTTACCAATGTAGATGAAATTATTTATTCTGTAAATGTTGTATTATATGTCACACATTCTATGTTATTTTGTGCCTTCGGTGTTGTGCAggtgaaaatgtattaaatgtaaatAAAGAATTGCAATACTGCAAACTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1747850 lncRNA upstream 128100 21798266 ~ 21798553 (+) True G1526604
TU1747847 lncRNA upstream 130465 21795724 ~ 21796188 (+) True G1526601
TU1747778 lncRNA upstream 174944 21751449 ~ 21751709 (+) True G1526532
TU1747766 lncRNA upstream 185816 21740453 ~ 21740837 (+) True G1526520
TU1747541 lncRNA upstream 299230 21627193 ~ 21627423 (+) True G1526304
TU1748301 lncRNA downstream 263114 22202387 ~ 22202651 (+) True G1526984
TU1748538 lncRNA downstream 314383 22253656 ~ 22253890 (+) True G1527216
TU1748557 lncRNA downstream 327523 22266796 ~ 22267021 (+) True G1527235
TU1748576 lncRNA downstream 338034 22277307 ~ 22277524 (+) True G1527254
TU1748612 lncRNA downstream 364496 22303769 ~ 22311636 (+) False G1527279
XM_021571275.2 mRNA upstream 592911 21297196 ~ 21333742 (+) False LOC110495818
XM_021571273.2 mRNA upstream 592911 21297197 ~ 21333742 (+) False LOC110495818
XM_036952268.1 mRNA upstream 592911 21297197 ~ 21333742 (+) True LOC110495818
XM_021571270.2 mRNA upstream 668953 21176625 ~ 21257700 (+) False LOC110495817
XM_021571269.2 mRNA upstream 668953 21176629 ~ 21257700 (+) False LOC110495817
XM_021571278.2 mRNA downstream 180504 22119777 ~ 22125450 (+) True LOC110495821
XM_021571279.2 mRNA downstream 536501 22475774 ~ 22477639 (+) True LOC110495822
XM_021571283.2 mRNA downstream 627395 22566668 ~ 22596390 (+) False LOC110495826
XM_021571285.2 mRNA downstream 627395 22566668 ~ 22596390 (+) False LOC110495826
XM_021571287.2 mRNA downstream 627398 22566671 ~ 22596390 (+) True LOC110495826
TU1746485 other upstream 1169241 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 1442940 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 1619749 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 1691473 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 1850341 20066254 ~ 20076312 (+) True LOC110495776
TU1748777 other downstream 660140 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other downstream 660224 22599497 ~ 22611452 (+) True LOC110497098
TU1749630 other downstream 1219560 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 2581462 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 3065488 25004761 ~ 25005609 (+) True G1530367

Expression Profile