RNA id: XM_021571288.2


Basic Information

Item Value
RNA id XM_021571288.2
length 5040
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110495827
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22537987 ~ 22590992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCACTCACTCAGCtcggctctgctctgctgtgctctgGCCTCGCACACTCGACAAGGACGCGACGCTACCAAATCTCCAGCGACCGACGGACAGATATCTACAGACCTAAGCTCCGAGTTAATAACAATTCTCCCAGGGGTGTGATGGAGGGGGGCTGACCTGGTGCCCCATGGGAAGTTTGTGATTCTGTGAGCCAAACGGACGTAGGGCCAACGCAGGGACCATCATGTCTCCAGCCCCAGAAGCCCCAGCTAGCCGGCGTCTTCTCGGCCCACCGGGGAGACACCCATGACTCCCAGCCTCTCTCCGCCCCGagcgaccgaccgaccgaccaacCGACCGACCGGGGATCCGATCCTCCATCCGGACTGTTTGCTGTTGATGCATGGAGCCCGATGAGACTCATAGAGGAATGAACATGTACCTTTGGTGGATTTTACTGCAAGGATTCTGGAGCGTTTATGGGGAACTTCCATTCATTGCAGACAATAACGCAGCCATGTTGGTCAACTGGAATGCAGTCGATGGAAACAAGAAGTTGTTTGCAATCTATGATACCAGCGTGAATGAACCAGGGAACATGTCGTTTGTGAAAGAGACGGTGGACAAACTACTAAAGGGATATGATATTCGTCTTCGACCAGACTTTGGAGGGGCCCCTGTTGCAGTTGGCATGAGTATAGATGTGGCGAGCATAGACATGGTATCCGAAGTCAACATGGACTACACTTTAACCATGTACTTCCAGCAGTACTGGAGGGACAAGAGGCTGGCGTACTTAGGGATCCCACTGAACCTCACCCTGGATAACCGGGTGGCAGATTCACTCTGGGTCCCTGACACCTACTTCCTGAATGACAAGAAGTCCTTCGTCCACGGTGTGACGGTCAAGAACCGCATGATCCGCCTCCACCCGGATGGAACAGTGCTCTACGGCCTGAGGATCACAACGACGGCAGCCTGTATGATGGACCTGAGGAGGTACCCTCTGGACGAGCAGAACTGCACTCTGGAGATCGAGAGCTATGGATACACGACAGATGACATTGAGTTCTACTGGAAGGGAGGAGACAATGCGGTGACGGGGGTGACACGCATTGAGCTGCCACAATTCTCCATAGTGGACTACAAGCTGGTGTCCAGAAATGTTGTCTTTTCCACAGGTGCCTACCCACGACTGTCTTTGAGCTTCAAGCTAAAGAGGAACATTGGCTACTTTATCCTGCAGACCTACATGCCCTCCATCCTGATCACCATCTTGTCCTGGGTCTCCTTCTGGATCAATTACGATGCCTCGGCTGCAAGAGTGGCATTAGggatcaccactgtgcTCACCATGACCACCATCAACACCCATCTGAGAGAGACGCTCCCCAAGATCCCCTACGTCAAGGCCATTGACATGTACCTGATGGGCTGCTTCGTCATGGTCTTCCTGGCCCTGCTGGAGTACGCCTTCGTCAACTACATCTTCTTCGGCCGTGGGCCACAGATGCAGAAGAAGCTGGCAGAGAAAGCCGAGAGGGCCAACAACGAGAGGGCGGCCAAATATGACACCAATCGGTCTCCTCAGGAAGGAGGTAAAACGTCATCTCTTAAGCTGACTAAGCAGCCTAATAGAGCAAAAACGCTCCGTGTCTCACAGTCGGCGGAGTCCCACGGTAATATCCTGCTGACCACCCTGGAGATCCACAATGAGGTGGCAGGAAATGAGGTCACCACCAGCCTGGCGGACAGCAGGAACTCCTCCGTCATGGGATTTGACAACACCAGCACAGGTACCGGCGTCCAGTGCAGGAAGGCGAGCCGGGCCTCGGGTCCTCGCCACAGCCTCGACAGGCACGCCCAGCTCAAGAGGCACAAACTGCGGCGGCGCTCGTCGCAGCTCAAAATCAAAATCCCTGACCTGACGGACGTAAACGCCATCGACAGGTGGTCGCGGATTATCTTCCCCTCCGTTTTCTCCCTCTTTAATCTAATCTACTGGATGTATTATGTCAACTGATTGACTGATTTTAGGGTTAGATGGTGttgtcatttttttttgttcTCCTTCGTCAtcattttgtcttttttttttacgtgATAGGAAATGTTTTGCTATCGAAAAACAAAGGACTGCTTCTATGTAACACTTGACCCCTTTGTTCAAGTTTTTATATTTGCAGTCGTACTCAAATTGTGGATTGCGGTGGGATTGCTAATTCTTCAAATTTTGTACAGAACTATGTAGATAAATACCCATACTGTAGGACTGGGACTGTATACTTCCCAGTCTTTTTGCCCTCTCTGCAGTTTGATAATGTTCTTTATACCCATTTCAATTTGTGCAATCTGCAAGAAAGAAAAGGTAAccataacattttttttattttaacaaactcaaataaaatacaaatgttatGTAATGTATTATGCAGATACACAATGAATTGTAGTGTATACTTTATCATTATTTACATATTATTTGTTATGAATGCGGAtcaatgcaaaaaaatatatactcatGTTTTGTGATGCTTGCCATCTTTATCACGTATATATTTTTGTCTTGGTCAGATAATATCATTTTCAAGTgcacatacagtatttacatatttTACAGTGAAGTGGTCCTGTTTCTGTATGTCAATGTACAgtgttattattagtagtagtagtaatagtagtagtagtattgctatttattatcattattattactattattattattattacatactGAACTATAATATTTTAACACAGGTGCAAATTAATGTCTAGGGTTGAGGGTTATAATATCTCAGGTTCTGGATTTTGCTAATTGGCGTCCATTTAAGTTTTCAAAATCCTGTCAAGCAGTCTTGAAATTGGAATATTGATTGGTAATCTAAACATACCCACCACTGCACTCAATGAATCTGTCACGGTTCACATCTTTTCTACCTGATATTGTGAATGCATGACAGGGTTTCACTCAGTAAATTGACTGCATTCCTTTAAATCAGCTCCACCTTTGATAGCTGTTGAACTCTCCTGCCAATGGCCTTGTgctatatactgtataacatGTCTTTGTGAAATATTCTGATATTTTTGTAAGGTGTAACGTTgactataactacagtatgtTAACTCCCTCTCTTGCGCGCTAGCATTGTAGACCATAGATTCCCTCTGTTCACAACATTCCCAACGGAAGTGGCAGGGTTGAGGGTTTGTTTGGTTTTGACCATTTGACTGATCTTTACTGCTGAAATGACCTCCAACTGTAAATATAATGTATATAACAGATGTGATGTAAGTGTGCACATTTTTATTTGGAGTTGTCTAATTAGTTGTCTGTTTTATAAGACAATGTGAAATACCGATGACATTTCTGTCCTCTTTAAATGCTTGAACATCTATTGAATTAACATATGGGGTtgatcatatatttttttttttataagcaATGAATGCCGTGAGAGACTAGCTATCAAATGCACAGCCAATATAAATAATACAACAAAACGCATTGTAAATCAAGGTCATTGCGACCACTGATAGTGGCATGTCATCGTCATCCATTTCTATATTTCTATAATCTATTCTGCACAGCTATCAAAGAAGCACATATGATGTATTAGTCTCTCAGTATACAACTGATGCATGAATTCTGTTCTACAGGGCAAGGACAACGAGCCATAGTCATTAGATTGTAACCAAACATCGAACACATCCCATGAGGAAATGTAATCAACGGGCATGGAAGTAGCTAACATTTGGTGAAACATTGCCATTGTCCATATCATGCTGCTCTGGGCGAGAGAACATGCCTAGATGGCACTGTCTCTTGTTTCTCTATGCATGTTATATCGCATGAGTAGTGGcgattaaaaaaaagaagaaaaaaaaagaacctTAACCCTATCATCTTAGACCTGTGTCTCAGGTTACAAGTACAGTTCAAGAGATTGTGATAAACTGCCAGTCTCTGGTTGGTTACAGAGCAACCAATCATATCCTGGGGTCAATGGCTGGGATTCACAACGACAGTCTTCAAATATATAACACATTTATATACGCATAAAGAATAAATCGTGCGCCCATGTATTTTACCATTACCAACTTGCAGCCAATTGCTTATAGTAGTGACATGTATCTCTGGTATGTAAATACACTTTGCTACTTGATCATTAAGCTTGTTGTGTGTTTTGGGTTTGAGTGATATAATGGCAGAGTGTGTGTGGTTACACACGTTGGCctttaaacagttacagaccCTGTGGTTTCCCGTCCCCTTTCTACTGTGTAGATGAGGCAGTGTTGGCTGGGTCTTGGTGTAAGATGACTAATATCCCTTGTTCTTGGCGTAAGATAGGTAATATCTCTTGGTCTTGGTGTAAGATGAGTCATTTCTCTTGGTCTTGGTGCAAGATGAATAAAATATCTTGGTCTTGGTGAAAGATGAATAAAATATCTTGGTCTTGGTGTAAGATGAGTAATCTTTCCCGAGATGCAAAGACTTGAGTTAGCCCTTCAGAGCTAATGCCTAGTCTTTAGCTCagagggctaacacagtcttgtggcaTGCAAGAGACCTGGGTTTGAATCCCGGTCAGTCACATTGGCACATTCAATCTGACACTGTTTCATGCATTAAGTGCACTCATCGTTGCTGGCTTCTAATGTTGTCTGGCCCATTATGGAATGTcaacatgttctgttctgccatAAATGTATTTAGGTATAGatatttgtgtttgtttttctccCTTATTTATTTAGGTCATAATGTTGCTCTATTCATGAAATAATATCAATTGTATGACAGTAATATCTGGTTTTTGCATCCATTCAAATCAATGATTTCTGTAGCACACCTGTTAGGCGCTATAGcaacaggatgatcaatggaCAGACGTCAGAGACAACATTTCTTGTTCCTAAtgcatttctgttgaatgattgAATCTAGAAAAAGCCCAATAGTTTATGATTTATATGTCCGGTGAAGATAAACAAATGATTACCAGTATTCCTGGATTGTGATTAAAACCGTATTTATcaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749155 lncRNA downstream 13685 22523930 ~ 22524302 (-) True G1527749
TU1749148 lncRNA downstream 28983 22508790 ~ 22509004 (-) True G1527742
TU1749131 lncRNA downstream 54850 22482836 ~ 22483137 (-) True G1527725
TU1749126 lncRNA downstream 59280 22478494 ~ 22478707 (-) True G1527720
TU1749114 lncRNA downstream 63310 22464927 ~ 22474677 (-) True LOC110495824
TU1749272 lncRNA upstream 89053 22680045 ~ 22680383 (-) True G1527852
TU1749273 lncRNA upstream 89506 22680498 ~ 22680724 (-) True LOC110497099
TU1749288 lncRNA upstream 122908 22713900 ~ 22725906 (-) True LOC110495830
TU1749323 lncRNA upstream 178452 22769444 ~ 22773617 (-) True G1527899
TU1749382 lncRNA upstream 269622 22860614 ~ 22860839 (-) True G1527957
XM_021571282.2 mRNA downstream 15972 22513221 ~ 22522015 (-) True LOC110495825
XM_021571281.2 mRNA downstream 15981 22513221 ~ 22522006 (-) False LOC110495825
XR_002469477.2 mRNA downstream 62229 22464196 ~ 22475758 (-) False LOC110495824
XM_021571276.2 mRNA downstream 725421 21806394 ~ 21812566 (-) True LOC110495819
XM_036952269.1 mRNA downstream 726847 21806394 ~ 21811140 (-) False LOC110495819
XM_036951424.1 mRNA upstream 89665 22680657 ~ 22690348 (-) False LOC110497099
XR_002469478.2 mRNA upstream 104310 22695302 ~ 22700120 (-) True LOC110495828
XM_021571295.2 mRNA upstream 122908 22713900 ~ 22725963 (-) False LOC110495830
XM_021571297.2 mRNA upstream 135129 22726121 ~ 22734066 (-) False LOC110495831
XM_021571296.2 mRNA upstream 135129 22726121 ~ 22734181 (-) False LOC110495831
TU1748552 other downstream 275525 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 1966120 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 2807919 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 2812456 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 2960887 19573628 ~ 19577100 (-) True LOC110495764
TU1749447 other upstream 281053 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 568566 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 890548 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 951614 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1688746 24279738 ~ 24280446 (-) False LOC110497104

Expression Profile