RNA id: XM_036952271.1


Basic Information

Item Value
RNA id XM_036952271.1
length 3945
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110497098
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22599016 ~ 22641368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTCAAAGTTAAGATTTTGCTTGCATACTTGTTTTTTATGGCTTTTTACGAGTCTCGATCTGTAGGTAGACGCCCTACTGTATCGTGTGAACGATAACGTCATCATGTCGGTGCATAAACTGGTTACTGTAATTGAATGGAACGGAAGGAGGTGGGGTGCTGCTGTTTAAGACGTTGATCATTGACGTTGCAAAGAAGGACCGGAGCGGCTCAAACAATCTCGGCGACTTCCGAACGCGGATGAATTCAACCTAATCCATGGTCGATCATCAGGACATTTGATGGATTTCCTATAGGAAACTATACACTGGGTGAATAGTTCCAGTTTATATATACCGCTCCTTCTCCTCCCTGGCTCCCTCTACTCACCGCTCTAACAACGCAGAAGTCTCCACCGTCTTCATCATAAGTCATTTTCATGAACAATGACAACCAAGTTGCTGGTGTCTTTCTTACTTCTGTCAGTCCAACGGGTGCGTTCCGACCCAGACCCAAGGGACTACGATGGGGACTATGAGGACACAACTGTCAGTCAGATGCTGGCTCCCAAAAACCACCAGGCAGAGGCCACGCTCATATTAAATAACTTACTTAAGGACTACGACAAGACACTACGCCCTGATATTGGAGTTAAACCAACGCTTATCGACGTCGACATATACGTCAATAGCATCGGACCTGTATCATCAATAGACATGGAATACGAAATTGACATCATTTTTGCACAGACGTGGATCGACAGCCGTCTGCAATACAACAGCACTATGAAGATCCTGACTCTCAACAGCAACATGGTGGGAATGATCTGGGTCCCTGACACCATCTTCAGAAACTCCAAGAACGCAGACTCTCATTGGATTACGATGCCCAATCAGCTTCTGCGTATTTGGAACGATGGGAAGATATTATACACGCTGAGGTTGACCATCAATGCAGAGTGCCAGCTGCAGCTCCACAACTTCCCTATGGATGAGCACTCCTGTCCCCTGGTCTTCTCTAGCTATGGTTACCCCAAGGATGAAATGATTTACAGATGGAAAAGGAACTCCATCGAAACCTCAGACCAGAAGTACTGGCGCCTCTACCAGTTTGACTTCATGGGCCTGCGGAATTCCACAGACGTCCTAAAAACAACAGCAGgtgATTATGTGGTCATGACAGTGTACTTTGACCTGAGCAGGAGAATGGGTTATTTCACCATCCAGACCTACATCCCCTGTATCCTCACCGTGGTGCTCTCCTGGGTCTCCTTCTGGATCAATAGCGATGCCGCCCCCGCCAGAACAGCGCTAGGTATCACCACTGTGTTGACAATGACCACCCTTAGTACAGTGGCCAGGACGTCCCTACCCAGAGTCTCCTATGTGACGGCCATGGATCTCTTCGTCACTGTGTGCTTCTTGTTCGTCTTTGCGGCCATGATGGAGTACGCCATCCAAAACTACTACGCCTACAGGGCACAGAAGCCCCGCTACAACAAGACAAACAAGACGCAGAGACTGACCTACTCGATGCTAGACACGGGGCCCAGGTCCCCCACGACTGTGGTTCCATTGAACAACAACTACTCATACTGGCAGGACTATGAGGACGTGTACGAGTGTCTGGACGGGAAGGACTGCCAGAGCTTCTTCTGCTGTTACGAGGAGTGCAAGGGGGGAGGGTGGAGGAAAGGACGCATCCATGTCGACATTAAGGAGCTGGACGCTTACTCGAGAGTCTTCTTCCCTACGTCGTTTCTCCTGTTCAACATCGTCTACTGGGTCTCTTATCTCTACCTTTAGCAGTTTCAGTTGGATTTGATAGAATTCGATTGGACAAATATGGAAAGACTCAAATGGGAAGAGGAGATGTCACAAGACATAAGATGTCACACAGTGGCAGCTTTGTGCACGTTGACACTTGATTGGTTGGTGGGTTAGTGTAACCAGCCAATAGACAGCTGTGAGACACTAACGCCAGGATGCTAGCCAGATAAGAGATAATGAAGCATCCACAGTGCCTTCTTCAGGAAGGGGCCATCACCTATACAGAGGTGCAATAAGGGCACTAGAAGCTTTGAAGTTTTTTCTACATAGGTTATCCCACATACGCCATTTCAACGCATGCTATACTGTTCATTAAAAACAATGAAAAGCTAGGGGGGACTGCACTATGAAATTATTATATTGTTGCTTTGTATTAATTAGTCAGTTGCATAGTCATTGCAAGCCATTTGACATATATAGAACCTCAATATGATTTATTTTAGGCACCAACGGGGTCTTAAATATTAGGTCATTGATAACATTCATTTGGTTTAGATTAATATACATTTATATCATAAACATTTGAATGATGTTTTCTACCAAGGGTGATGTGCAACAAGAACATGCATAGTATACCTTACAACAACACTATAAGATAATAATTTAAAGATGAAAATAGTTATTTTGTAAAATAATGTATCTAATAAACTTTTCTTTTGTAACAGAGTTTTCCAGACTATTTGATAATTAAATCAAATCTGAGGACAAGGTATGGTAAGGTTTCAAACTATAGTGGTATGGAGATAGATGATGTTGTTGAATTAATTTACAGAATCTGGACATACATTTATCTCCATACAGCAGGCCGACAACACATCATAGGCTAAGGGCCAGGGTAGCATTTGCatcagtacagtactgtatatattgtgctCGTATTCAGTACAGTACTAATAAAAAATGTATGGTTTCACTCCAACAACACTACTGCTATTTTCTTGAGCAAGAACATGTGTAATTCATGTTATATCATACAGTAGCTGTTGTACCAAAACAGACAACAACATCACAAATAATTGTAAAAGGTGTGTTTATGGAGTTAAAAATAGTTTgatttactgtactgtaagtaaCACTGTTGTTTCTGCGGTGGTTTGACTTAGAAGTATGGTAGAACCCTGTATTCTATGTTTTAAGAGAACGTATATGTGAGAGATGTTTTCATGCTATTTTCATAGTTGAATGTAGATCATACTTTAGACCAATAACAAATAGTGGTTTTCAACTCTGTATAACAATACAAATATTGCACTTCATAAGTGTCTTAGTTTGATATAATGTATTTACAATAAATCAAAGACTATTTTCTAAGTCTGATGGAACGCACCCTTTTGTTACAGCAGATCTGAGAGAACCACTGTCTAGGTACAGCTATGCTTTTTAGAGAATTCAGTCTGTGGTATTGCTTAAATTAATAAAACTATCTTTGCTTAAGGtctggagtgtgtgtgagtgtgcttaaggtctggagtgtgtgtgagtgtgtgtgcatgtgtgtatgtaggtCATTTGGATCATTAGCAAACTGATCTTTCTTACACACTTTAGAGTTATTTAAGATGGAAATATATTTCAACGTGTAGGAATGTTTTTTGTCTCTGACGTGGTTTTTATAGCCCACTTCAAACCTCACACTGTGCATCCTGTTGTTTCGAAGTAAGGAGGCAAGTCAATGAAAAGTCATTATGTACAATAATCACTCATTAGGAAGTAGGCTAAGGAAATCCAAAACAGACCCTTTTATTCCCACAGAAGGAAATTAACTCTACACACGATTCATGTCTATTGCAGAGTAGATCATTATACAATTAGCATCCCCGTATAGAAATAACCGGAAGTTATTGTTCAGGGCCTGCATTCACAAAATGTCAGAGTAGCAGTGTAGATCACATGAGATCATATACACAAGGGACACCTACTCTGAGATACTTTTTCAATGCGGTCCTGGAGCTCACCACAGAATATTGATACCCCTGGTATGTGGATACCCCTGGTACGTTGATACCCCTGGTACGTTGATACCCCTGGTACgcgttggggaataatcagaattggttggtaacataggtaagatgttttatattcatcatatgtttgtaagttacttctcatcagaatgttatttttgtttaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1748742 lncRNA upstream 97926 22501145 ~ 22501407 (+) True G1527403
TU1748737 lncRNA upstream 101951 22497172 ~ 22497382 (+) True G1527398
TU1748734 lncRNA upstream 104679 22494430 ~ 22494654 (+) True G1527395
TU1748723 lncRNA upstream 118417 22480701 ~ 22480916 (+) True G1527384
TU1748678 lncRNA upstream 207527 22391407 ~ 22391806 (+) True G1527341
TU1749395 lncRNA downstream 230187 22871552 ~ 22885161 (+) True G1527970
TU1749410 lncRNA downstream 260378 22901743 ~ 22902638 (+) True G1527985
TU1749492 lncRNA downstream 314012 22955377 ~ 22955666 (+) True G1528057
TU1749494 lncRNA downstream 314387 22955752 ~ 22962753 (+) True G1528059
TU1749513 lncRNA downstream 353790 22995155 ~ 22995440 (+) True G1528078
XM_021571283.2 mRNA upstream 2943 22566668 ~ 22596390 (+) False LOC110495826
XM_021571285.2 mRNA upstream 2943 22566668 ~ 22596390 (+) False LOC110495826
XM_021571287.2 mRNA upstream 2943 22566671 ~ 22596390 (+) True LOC110495826
XM_021571279.2 mRNA upstream 121694 22475774 ~ 22477639 (+) True LOC110495822
XM_021571278.2 mRNA upstream 473883 22119777 ~ 22125450 (+) True LOC110495821
XM_036952273.1 mRNA downstream 58977 22700342 ~ 22713534 (+) True LOC110495829
XM_021571303.2 mRNA downstream 109323 22750688 ~ 22752806 (+) True LOC110495834
XM_021571305.2 mRNA downstream 128026 22769391 ~ 22773674 (+) True LOC110495835
XM_036952285.1 mRNA downstream 544059 23185424 ~ 23198238 (+) False LOC110495843
XM_021571313.2 mRNA downstream 545305 23186670 ~ 23198238 (+) False LOC110495843
TU1746485 other upstream 1841921 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 2115620 20473360 ~ 20483713 (+) True G1524181
TU1745162 other upstream 2292429 20305705 ~ 20306904 (+) True G1524124
TU1745087 other upstream 2364153 20206492 ~ 20235180 (+) False LOC110495784
TU1744971 other upstream 2523021 20066254 ~ 20076312 (+) True LOC110495776
TU1749630 other downstream 517468 23158833 ~ 23161291 (+) True G1528194
TU1751373 other downstream 1879370 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 2363396 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 2507618 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 2513368 25154733 ~ 25155895 (+) True LOC110495895

Expression Profile