RNA id: XM_036951424.1


Basic Information

Item Value
RNA id XM_036951424.1
length 1582
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110497099
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22680498 ~ 22690348 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCCCAACCTAAGCTGGGCATCCAGACAAGACAGATGAAGGAGGCATTCTTTGAGACCAGGGTGCGACAGGACATCCAGGTTAGaaaaggagaggtgaggaaggagaAGGACTTTGCTAGAGGCCAACCTAAGCTCTctaccaaaacatcagccaggaagcataggaacacAGGCCAGGTGGTGATTCAATGTCGTGTGAACAACAGACTGGTCTCGTTGAGGCAGCTGACTCAAAGCTTGAAGCGCCTGTCCACAGGAGATGAACTGTTGCCCAGGGTGATCCGTTCTCCCTCGGGGTGTGCAGTGGCCGAGCCAGAGGGCGAGGAGGATGAGTGTCCCAGTCTGAGCTTCACGGCCCCCAGCGCCCTGCTGAAGCCTCCCTACGCTCACCCCCTCAGAATCTTTGATGTGATCCGAGGCGTGATGACCTGGAAGAAGTTCCCATCGGCTGCCCTGGCCTCTCTGTCCAACAGTCCCACACTCACCAGTAGCTGGGCCCCGCGCATGTCTGACCCCTTCAACAGTGACATTCTGCCCACCATGGCGCCCACAGCTCTGAATGGCCTTCCAGAAGATATGACAGAGGAGCTACTGGATGGACCGTCTGAAAGCACGGGAGTATCTCTCACACCCGAGATGATCCGAGCAGAGTTTCCCCTGCCAGAGAATGTACCTTCCACTCCCAGACAGCTGAAAGACGACAGCTTTAAAGATGACAGCAGTTCCCCGAGTCCCTGTAaaactccccagatgatgcctgtcagTACAGTAAACACCTCCAGGGAGTCAAGAGAGCAGCAGCTGGAGATGTTTCTGAAGTCTCAGACCAATAGACTTGGTGCCAAGGTGACGGCGCGACTCAACCACCTGAATATTGTGGGCAAGGCTAATTCACCCTCTACACCAGATAATAAATAGTGCTATATTTGTTACGAGGCACTAAGGTTGATGCAGGAAATATCAGATTACAGTACCAACATACATTGACTGATATATTTCCTATAATATATTTTACTGTAAAATACATCATTACTGTAGCTGCTATGTGCTATTGTACAGTTGCCACACCACTGATGCTGTGCCCATTGTCTTGCATTTACGCTGGCCAATTCAGCCAAGGACATTTTCATTTAAAACAGTCTTTATGTACTTTAAAGTTCGGCTTCTTGTTTTATATAATTAATGACAGGCCTTTCTggcaaataaaaaaatagataaaGGAATGATTCCAAATTTACACCTGTATGTCACAGATCCACAGTTaaagcaatctctattgcactccacactgctctttcacacctggacaaaaggaacacctacgtgagaatgctgttcattgactacagctcagtgttcaacaccatagtgtcctccaagctcatcactaagatgaggaccctgggactaaacacctccctctgcaactggaccctggacaTTCTGACACATCCGCCGTGCTGAACCTCAACACAGGGGCGCCAGCTTagtctcctctactccctgttcacccatgtctGCGTGCCCACGTtcgactcaaacaccatcattaagttagccGATGACACGGCGGaccgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749272 lncRNA downstream 274 22680045 ~ 22680383 (-) True G1527852
TU1749155 lncRNA downstream 156355 22523930 ~ 22524302 (-) True G1527749
TU1749148 lncRNA downstream 171653 22508790 ~ 22509004 (-) True G1527742
TU1749131 lncRNA downstream 197520 22482836 ~ 22483137 (-) True G1527725
TU1749126 lncRNA downstream 201950 22478494 ~ 22478707 (-) True G1527720
TU1749288 lncRNA upstream 23552 22713900 ~ 22725906 (-) True LOC110495830
TU1749323 lncRNA upstream 79096 22769444 ~ 22773617 (-) True G1527899
TU1749382 lncRNA upstream 170266 22860614 ~ 22860839 (-) True G1527957
TU1749487 lncRNA upstream 261213 22951561 ~ 22951775 (-) True G1528052
TU1750422 lncRNA upstream 275916 22966264 ~ 22991309 (-) True G1528860
XM_021571288.2 mRNA downstream 89665 22537987 ~ 22590992 (-) False LOC110495827
XM_021571289.2 mRNA downstream 89669 22537987 ~ 22590988 (-) False LOC110495827
XM_021571290.2 mRNA downstream 115065 22537987 ~ 22565592 (-) False LOC110495827
XM_021571291.2 mRNA downstream 115426 22541021 ~ 22565231 (-) True LOC110495827
XM_021571282.2 mRNA downstream 158642 22513221 ~ 22522015 (-) True LOC110495825
XR_002469478.2 mRNA upstream 4954 22695302 ~ 22700120 (-) True LOC110495828
XM_021571295.2 mRNA upstream 23552 22713900 ~ 22725963 (-) False LOC110495830
XM_021571297.2 mRNA upstream 35773 22726121 ~ 22734066 (-) False LOC110495831
XM_021571296.2 mRNA upstream 35773 22726121 ~ 22734181 (-) False LOC110495831
XM_021571298.2 mRNA upstream 35773 22726121 ~ 22734181 (-) True LOC110495831
TU1748552 other downstream 418195 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2108790 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 2950589 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 2955126 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 3103557 19573628 ~ 19577100 (-) True LOC110495764
TU1749447 other upstream 181697 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 469210 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 791192 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 852258 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1589390 24279738 ~ 24280446 (-) False LOC110497104

Expression Profile