RNA id: TU1749288


Basic Information

Item Value
RNA id TU1749288
length 869
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC110495830
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22713900 ~ 22725963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTCCACATGCAAGGAGGAGCTGGGTCTTTTTCTGGGGAACAACATGTCTATGGCTGAATTTGAAAAGGCTGCCGATGAGGTGAGGAGGCTGACGGTACAACCTAGCTACGCTGAACTAGCAGTAGTATATGGTTTGTACAAGCAGGCAACACTTGGCAACGTCAACACGGAGCGTCCGGGAATATTTGACTTCCAAGGAAAATCTAAATGGGATGGTTGGAAAGCACAGGAAGGAAAGTCCAAAGAAGATGCCATAAAAGAATATATTGCCTTTGTGGAAGAAATGAAAGCAAAGTACCCAATGTAGAGGTTATCTTAAGGACATTAGTGCACATTTTTTGTAGAAGAACCattttataattaagcaataaggcccgagggggtgtggtatatggcctccACTTTGCGTTGTGCCTCAGAAAAGCCGATAGCCGTGGTATagtggccatataccacaaatcccAGAGGTCccgtattgctattataaactggttaccaatgtaattagaacagtaaaaagaaATGTTTTGACATTCCCGtggtataaggtctgatataccatgtctgtcagtcaatcagcattcaggactcgaaCCACCCAATTTATAATAAGTTACAATGAACAAGAAGACGAGGGATCAAATCTGACATTGACATGGGTAAAGTGTTGAGACCATCAAGATCACAGTTTTAGACCACTCACCAGCAATTTGttgttatcctgttgaaaaagTGCAGCCCTTGATCTTGGTATTTATTtcagaaaatgtattttattttatacagtacATTGGTGCAAAGGAACAGTAAATTATGTTTCTTAAAAGATCTGTCTTCAAAGTATAATAAAAAGTGAGAATTTTCAA

Function

GO:

id name namespace
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749273 lncRNA downstream 33176 22680498 ~ 22680724 (-) True LOC110497099
TU1749272 lncRNA downstream 33517 22680045 ~ 22680383 (-) True G1527852
TU1749155 lncRNA downstream 189598 22523930 ~ 22524302 (-) True G1527749
TU1749148 lncRNA downstream 204896 22508790 ~ 22509004 (-) True G1527742
TU1749131 lncRNA downstream 230763 22482836 ~ 22483137 (-) True G1527725
TU1749323 lncRNA upstream 43538 22769444 ~ 22773617 (-) True G1527899
TU1749382 lncRNA upstream 134708 22860614 ~ 22860839 (-) True G1527957
TU1749487 lncRNA upstream 225655 22951561 ~ 22951775 (-) True G1528052
TU1750422 lncRNA upstream 240358 22966264 ~ 22991309 (-) True G1528860
TU1750439 lncRNA upstream 266796 22992702 ~ 22992926 (-) True G1528876
XR_002469478.2 mRNA downstream 13780 22695302 ~ 22700120 (-) True LOC110495828
XM_036951424.1 mRNA downstream 23552 22680657 ~ 22690348 (-) False LOC110497099
XM_021571288.2 mRNA downstream 122908 22537987 ~ 22590992 (-) False LOC110495827
XM_021571289.2 mRNA downstream 122912 22537987 ~ 22590988 (-) False LOC110495827
XM_021571290.2 mRNA downstream 148308 22537987 ~ 22565592 (-) False LOC110495827
XM_021571297.2 mRNA upstream 215 22726121 ~ 22734066 (-) False LOC110495831
XM_021571296.2 mRNA upstream 215 22726121 ~ 22734181 (-) False LOC110495831
XM_021571298.2 mRNA upstream 215 22726121 ~ 22734181 (-) True LOC110495831
XM_036952274.1 mRNA upstream 15289 22741195 ~ 22746929 (-) False LOC110495832
XM_036952275.1 mRNA upstream 15289 22741195 ~ 22746929 (-) False LOC110495832
TU1748552 other downstream 451438 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2142033 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 2983832 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 2988369 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 3136800 19573628 ~ 19577100 (-) True LOC110495764
TU1749447 other upstream 146139 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 433652 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 755634 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 816700 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1553832 24279738 ~ 24280446 (-) False LOC110497104

Expression Profile