RNA id: XM_021571298.2


Basic Information

Item Value
RNA id XM_021571298.2
length 2874
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110495831
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 22726121 ~ 22734181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGAAGAACTTATCTTCTTCACACAGAGGGGGCAGTTGGGGCGGGGACGGATTTCTGAGTCACAAAGTTATGAGCGCAAGACATAAATACACAGACGTCGAGAAAGctcagGACAGGATGCCCCAGGAGGAGATGAAGAAGCCTCTTATACTTGGTGGTGCCAGCCCCAGACACCTCAAAACCTCAATTTCTGATCCAGGTACCCCCTTGGTTGGCATCCTGGGCACAGGTGACTTTTCCCGCTCTTTAGCCACCAGGCTGGTAGCCTCTGGGTACCGGGTGGTAGTGGGTAGCCGCAACCCCAAGCGCTGTGCCTCCCTCTTTCCCGAGGAGGCTGAGGTGACCACCCAGCACCAGGCTGCCACCCAGGCTGACCTGGTGTTCGTGGCCCTTTTCCCCGAGCACTACTCCACCCTGGCTGGACTGAGGGAGCCGCTAGTGGGGAAGACTCTGGTGGATGTTAGTAATGGTACTAAGATCAACAGGGATAAGCAGTCCTACGCGGAGCAGCTGGCCAATATCTTCCCAGAGAGCAGTGTGGTGAAGGCCTTCAATGTGATCTCGGCCTGGAGCCTGCAGACGGGGCCAAGGGACGGCAGCAGACAGGTGCTGATTTGCAGTGACAGTAGTAAGGCCAAGAGCGCTGTACTCCAGATCTGCCGCAGTCTGGGCTTCATCCCTGTTGACATGGGCCGCCTCTCCTCTGCCCAGGAGATAGAGAACACCCCCCTGTACCTCTTCCCCTCGTGGCGCGTCCCATGTCTCTCCACCCTcagcctcttcttcttcttctacgcCTACAACTTTCTTCGTGACGTCGTCCACCCGTATGCCACGGCAGGGAAGAGCACATTCTACAAAATTCCGGTGGAGATGGTAAACGTGACACTCCCCTCGGTGGCCTTGGTGACCCTGGCTCTGGTCTACCTGCCTGGCCTTGTGGCTGCCTTCCTGCAGCTGTCGTGGGGCACCAAGTACAGGCGTTTCCCCAACTGGTTGGATCGCTGGCTGCAGCAGCGGAAGCAGTTGGGCCTCTGTGCCTTCCTCTGCGCAGCGCTGCACGCCGTCTACAGCCTGTGTTTGCCCATGCGCAGGTCTGCTCGCTACAATCTGCTCAACGCTGCCTTCAAACAGGTGAAGGTAGGCCAGGAAGACTcgtgggtagaggaggaggtgtggaggatGGAGCTGTATCTGTCTATAGGCATCCTGGCCCTGGGccttctctctctgctggctATCTCCTCACTGCCCACTGTGGGCAACTCGCTCAACTGGAGGGAGTTCAGCTTCGTACAGGGATGAGGATGAAATGGGTGAGTCACGACTGAACCTTCCCACCTGTCAAGGtCCAGACTGGGCTACATGGCCCTGTTGATGGCCACCCTCCACACGCTGACCTATGGCTGGGACCGGGGCTTGGACCCGGAGCAGTATCGTTTCTACCTCCCTCCCACCTTCTTGCTGGTGCTGGCCCTGCCGCTGGCTGTGCTGCTGGGGAGGCTGGCTCTGTCCCTGCCATGCGTGGCTCTCCGGCTGAGTCGTATCAGGAGGGGTTGGGAGAAAAGCCGAGCCATCCGGTTCACACTGCCTGAGGACGAGCGTAATGGGCCATCACAGGAGGACATCAGTAATGTTTGAGAGATGCTTGGTTTAGTCTTACATGCAGGATTGAATGAAGGAAGcatggaagacacacacacacacacacacacacagaggcaggcaagtggagatgggagagaagtaCTGACTGTGTCATATTAAGGGATGTAATCTCACCAACAGTAGCCTTATGCATCAAAAGCAATTTAGGGATTTCATTGGCCTTTGTTATACTCGTGAACATGCTTCTTGTTTGGTAGACATGTCATCTCTAGCACTACCATCTAACTTGGTATTTTTATCAAGAGAAATGAACTATGGTTCTATTGCTCACTAAGCCTCCGACACATGTACAGTGATGCATTTTGGAGATGACTATTATAGTGCTGCGTTTAATTCGCTGCCACTACTCCCTTTAACTAAACTGGAAACCAGACATTGTCATTGTCTTTCTACTGGTGTCTTAGCCAGTCAGATACTGGGCATCCAATGCTAtcaggtaaaaaaaacaacaaccttgtACTGTCTCAGGCTTACACTTCAACGTGAGGGAAGCCTGGGCATCCAACACTGTAGTTGTAGTGCTGTTAGATGCCTCAGCTCTGTCTGCCCTGCTCGTGGCTGAATCTGGCTCAGCTGTCTGATTTGCCTGCTGTGGTCAGTCAGAGCTAAAATGTTGCACCTCACAGCAATGTCATCGGTTGTTCGGTGGTGTCATGCCTGCTTCTGCTGTGTAATCACTTCTTACTGCATCGGcgatgtgttaaaaaaaaaaaaaatagagctTTATATTTTTTTGCCTTAGGCTATTGTTGCATTGTTTTGATGCGTCAATGAATGCACTATAATGTTTATACTTTACCTGGTCAGAGTCTTTCAAAGATCAAATGTGTACCAAAGATTGTGAAAATATATTATCGAAGATTGCAAAAATGTACTATCGAGTCCCAAATTGTTGCTGGCACCAAACCCAATCGAGGATGGctcatgttttgtttttgtgttgaaGTTACACTGTTATAGGTATAATTTAAATATGATGACATTGTATAAAATGTACTAATTTTATTGAACAATCAAACTAACCGGCTGTCATGGAGACTCTATGGTACATGTGAAATTGTAAGAGCTATTTTATATTCTGACTGTTACATTTCTTCTGTTAAATGCAATAAGTTCCATAGGTTTATCCACAAAAGGAAATCAAAGACATGTATATTCTTATAGTGCTTATTGGCAGAATAAACACACTATTTTCCACAATTTA

Function

GO: NA

KEGG:

id description
K10142 STEAP3, TSAP6; metalloreductase STEAP3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749288 lncRNA downstream 215 22713900 ~ 22725906 (-) True LOC110495830
TU1749273 lncRNA downstream 45397 22680498 ~ 22680724 (-) True LOC110497099
TU1749272 lncRNA downstream 45738 22680045 ~ 22680383 (-) True G1527852
TU1749155 lncRNA downstream 201819 22523930 ~ 22524302 (-) True G1527749
TU1749148 lncRNA downstream 217117 22508790 ~ 22509004 (-) True G1527742
TU1749323 lncRNA upstream 35263 22769444 ~ 22773617 (-) True G1527899
TU1749382 lncRNA upstream 126433 22860614 ~ 22860839 (-) True G1527957
TU1749487 lncRNA upstream 217380 22951561 ~ 22951775 (-) True G1528052
TU1750422 lncRNA upstream 232083 22966264 ~ 22991309 (-) True G1528860
TU1750439 lncRNA upstream 258521 22992702 ~ 22992926 (-) True G1528876
XM_021571295.2 mRNA downstream 158 22713900 ~ 22725963 (-) False LOC110495830
XR_002469478.2 mRNA downstream 26001 22695302 ~ 22700120 (-) True LOC110495828
XM_036951424.1 mRNA downstream 35773 22680657 ~ 22690348 (-) False LOC110497099
XM_021571288.2 mRNA downstream 135129 22537987 ~ 22590992 (-) False LOC110495827
XM_036952274.1 mRNA upstream 7014 22741195 ~ 22746929 (-) False LOC110495832
XM_036952275.1 mRNA upstream 7014 22741195 ~ 22746929 (-) False LOC110495832
XM_036952276.1 mRNA upstream 7014 22741195 ~ 22746929 (-) True LOC110495832
XR_002469479.2 mRNA upstream 119059 22853240 ~ 22859683 (-) True LOC110495836
XM_036952277.1 mRNA upstream 163768 22897949 ~ 22948688 (-) False LOC110495837
TU1748552 other downstream 463659 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2154254 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 2996053 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 3000590 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 3149021 19573628 ~ 19577100 (-) True LOC110495764
TU1749447 other upstream 137864 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 425377 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 747359 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 808425 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1545557 24279738 ~ 24280446 (-) False LOC110497104

Expression Profile