RNA id: XM_036952280.1


Basic Information

Item Value
RNA id XM_036952280.1
length 8406
RNA type mRNA
GC content 0.50
exon number 20
gene id LOC110495841
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23008547 ~ 23168591 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGTGTTTGCAGAGCACCAGTCTGGCAAgccagagtgagtgtgtgttcgCTCAGTGCCTCCGCTGCTATTTCTACTCCTCACTGGGAATTTACCAAAGGAGCATGTTTCCAGCCACCTTCAAAGGGAATTCCATGTTACAATGTCTGACGTAGACTcatcagaggctgctgccaaccTGTTGAGTGAAGCAGAGGATTTGCCAGGCAAGACtGGCTCCCATGGCCGTGGCGGTGGGCCGCAGCGGAAGAGGAGGACCATGAACGGacacctggagaggagggagcagctAAAGCGACTGTCGCTGGACAGCAGCTTGGTGGGGTACATGGACGCCAACAAGTGCATCGAGGAGCTACTCAAACAGCTGGAAGAAGAGCGGAGGAATGTCCGAAGGGAGAAGCTGGCCGTGGCTCGCCTGCAGAGGGAAGTCGCACGAAGCAAAAGTGAAGGAACAATGCGACAAAAGCTGATTCATGTGCTAGAGGAAGAACGACGCCTGCGATTGGACAGTGAGAAGCGGCTTCGGGAGGTGACGGACGAGTCGGAGCTGGGCCGAGCGCAGATGGTTTCACTACAGCAACACTTCTCCAGgATGGAAGAGACAGTGCGGACGCTGCTGCAGAACCAGGGGGTGCTGGAGCAGACAGCCGTGGACACTGTGGACATCATGAAGGCCTACAAGGATAAACTCTCGGAGGAGGTGCAGAAGACGCGTGACAGCCTAGAGCAGAACAGCAGCGGTGGCGGCCCACAGCCGTCTTCTGGAGACCCTTTGCTGCCAGACATCGGCAGCATCAGCCGAGCGGAAGAGTTTCAGGACCAAACAAAGCTCCTTCTGGAGCGTCTGCGCACCCTAGAGGAGGAAAACTCCGCATTGGCCATGGAGAACGAGAGCCAGAGGGAGCAGTATGAGCACTGTCTGGATGAGGTTGCCAATCAAGTTGTGCAGGCACTGCTCACCCAAAAGGATCTGAGGGAGGAGTGTCTGAAGTTGCGGACCAGAGTGTTTGACCTGGAGCAACAAAACCGGACCATGAGTGTCCTCTTCCAGCAGCGAGTCCGACCTGCATCAGACCTGCTCCTGCAGAAACTCCACTCTCGGATCATGGATTTGTCTGCCTCTGATCTCCTCCTGGAGCCGGAGAGGAGCaaaagcttcctgctatccaggaacACTGACTCTCCACCTCATGATGTCCAACTGAACGGAAAGGCGGGACTTCCTGTGGCCAAGTGTCTGAGCCAGCTGAGTCTGACGGTGCAAGCGCCAGTCTACCCACGCAGCAGCTGTAGCAGCAGTGAGCTGTCCCTGTCTAGCGCCTGCAGTGAATACTCCAGTGGCTCCTACACCTGGAATGAAGGACGCTCCTGTGGGAAAATGTCCTCTCTGACATGGGAGAAGAGGTTGAGCCTGGGTTCCTCGGCCCCCGGGAACATCTGCGCCCCCCTGGAAGAGCAGCTCCCCACGAGGAGGAAAGAGAGCCACATCCTAGAAGGCCTGCGGAAGCTCCAGAGGAGaaaaccaaaaggctcctcatcCTCCTGGGTCTCCAAGTCGGGCGACAAGGACTGCATGAACTCTAATGAGGGTATCTACTCTCTGGGGATTAAGAGTGGGAGCAAGGGAATCTACAAGCCCACTTATGTGGGAAGGACCCCTGTCTCAGGGGTGGGGGGCAAAAAGTTTGTGTACGACTCTGATGATGCGGACGACGAGTCGCTACATTCGGCGTACTGCAGACGAGACTGCGTCCCCAGTAAGGACGAAGGCTGGATGTACTTCAGGAAGCTGTCGCACAGCGTCTCGGACAGTGTGTGTAGCTGGGATGGGCGGCAGGACAGTGGCGTAGTAGGGGATAGTAACTGCAGCATGGGTATGACTCACCCGCCCGGCTATAACTCCAAGGAGCGTCCAGAGAAACTCAAAAGCTTCATCAACAATTTCCTCTCCGGGGGGCGGACCTCGGCTGTTCTAAACCCCTCCCTGTTGCACTTTGACATCAGCCCCACAGAGGCTGAATGCCCCCTCCACCTCTCAGACACCGACCCTGAGGATCTGCACACTGAGGTCAGCGACCACCGGCGGCTGCCTGTTTGCCGGACAGCTGAGCAACTGCAGAAGGACAGCAAGAGGCTCTCAAGAGATTCTGACAAACTGCTTCCCGTACAATGCTTGAAGAGGGAACCTGGCCGAACTCAGTCTGCTGACGGAAGGCCCCGGCCTTTCAGCCTAATCAAGGAACATAAAACCCAGTCTGAGGAGAGTATCATGGCTGTATTCGATGCAGACGGACAGCCCATTGAACTCAGTGCTCAGCAGTCCTCTTTTGGTACTGGGGCTCAGAAAGAGATTCCTGGTAGGAAAGAAAATGGGGTTGCTGAGTATGCTGCACTGTTGCCTCATGATAGGCCCATTCGTCACAAAGTAGGCAACAACGGCAGCATTAGCAGGGAGGGAAGCCCAGAGAGGCTGCAAATGCATGTCACTCCAGTACGGAAATTGATAAAGCCACCTTCCAATCGATCCAACAAAGGCCACTCTGTCCCTCCCATGAACAATGCTTCCACCAGCCCCAAGGCCATCAGCTCAAAGATCCCCAGCAGCCGGGGGAAAGGATCTCCACTGAAGGTTTCTAAGGGCTCCACCACGGAAACAAGCAACAGTGGACCAACCTCCGGATTCACAGCTCAGGAGTCAAAGTTCCCTTCTTCTCCTCCGGTCAAGATGTCCAGGTTCATCAAAGCTCCAGGCTGCACTACAAGCCCCAAGGCAGTAATCAACAAGCTTCCTGGCAGGAATGACTGGACAAAAGGCTCCTCATCTAGTGTTCCAACCGGCTCCCCACACCTCCCAAGAAGGCATTTGGACCATGTGGACTACAGGGAACAGCCTACCAGAGACAGACACTGTGAAGCCAGCAGCAAAACTGAACTCAGGTCCCCGACTCCTCCCCCGCCCCCTGGCCGCACCACCTCCTTACTTATCAGACCAAACTACGATGGGTCACCTCAAGCACTTAAACCAGGGGCTCAACCATCCACGCCTACAACTGGGAGGGGGCCACCCCCGAGTTACCACCCCTCGCCTGTACCAAATATGCAACATTTATTACCACCCCCACCCTACAAGGGCCAAGATACCATAGACCTGGACGCAGGCTACGGTACCGCAATCGCACCTCAGAAACTGTTGGACAAATCGAGCCAGCAGCACCCTGCTTCAAATGAGACCCCCTCTAAAGGCACTTCGAAACGGGTCCCCACAAAACTCTACCTCCCCTCCTCAGGGCATGTGCCTGATCACCCTGAAAATGCACCTAAAAGCTCAAAGAATGTTCCTCCTCCCTCATACAACTCTCAACGTGGCTCTTCACTTCAAAGCACATTTACAAGTAAGAAAGGTACCAATGACAATAGGCATTCTATGTCATATAAGACCTCTAGTAGTTTCCCTGTAACTCTGCAGGGCCACCCTCAGTGTCCAACAGAACCTCACAGTAGTATGACTCAACCTCCCCAGGCTGTAGCAAACCCACCCGTCTCTGGAACTAGCACTCCAAAAGCATCAAAGACACGCATTCCTATGGGCTTCAAAGCTTTTGTGAAATCGCCCCCTTCACTGCAGAAAGGCTCCACCACGATACCAGGAAAGCAAGAGAAGGAACACATCAACTCGGTCTCCAAAGAGACTGTGACTTCAAATGCTTTCATCCCGTGTGACAGTTTTCAGGCAGTGTATGTTGATTCATTAGCCATGACTTCCATCATAGAGACTAAGGGTGAGGTCCAGTGCATAATTCAGGAAGAGGAGGCACACACCTCTGAGTTGGCAGAGCAGGGGGTTGGTGACAAGTCGGAATGTGACAGTAGACTGTTTAAGAGGTCCATATCTGTCACGACCAAACCTCACCTAAAGCCTGTCCTGGGGATGACTGGGGCGAAAGCTCGCAGCCAGAGTTTCAGCACCCACTACATGGAAAAACCCAACATCAGTGTGTTGGACGGACATGTGAAGATTCGAACCCAGATCATCACCAACTCTGGAGAGAGGGGGAACTCGTTAACAAGGCAGAGCTCGTTTGTTGAGGGCATACAGATTAAACCCAGTAGCGGATCTGGGGAAAGTCCAGTCCGTTGCCCCAGCCACAGGCTGAGCCACTACGGAGGTATGACAGGCTCAAACAGCCACCAGGGTCTTCCGGAGAGAGCCTCCACATCGGGATTCACCGGTGAAGGGCCACGGAGCCCAACAAAGGGGGAGAGCGTCACGGCTCCACCTCAAAAAGAAGTGCGTAGCTTACCCCTCGCCGACCGGATCGGCTTGAAGAACAACCGAAATCCCAAGAAGGTTGCATCTCATCCTCCATTTGAGTCGCCGGCCTCTCCTGTCTATAGCCCGGAGGCCACAACAAAGGGTGGGAAAGTGCTCAGCCCCGGAAAACTAGACCATGCGAAGAGCGTCAAAGTCCAGGCAGGCTGTTCCCAAGGGGAAATCGATGAGGGAGAGCAACCAGTGAGCCCCACAGTCTGCACCATTGAGGAAAAGGTCATGATGGGGATCGAGGAGAATATCCAGAAAGGTCAGGGTCAAGAGAAGGTAATAGCACCGGAGACCAAGCAGAAGACCGGCCCGTCTCTAGCCAACTGGTTCGGCCTGCGTAAAAGCAAGCTGCCAGCCTTGAATGGAAAGAAATCAGACGCCACCTCCCCGAAAGAGAAAGATGAGAAAAAAGAGCTGAGGATCGGATCTGTGCTGGGAGGCAAACAGATGAAATCGGACAAAAAGAAGGACAAGAAGAAAAACGACAGCCAGTTCGAAAAGAGTCCAGAGCTGACGCTGTCAGAGAACAAGCTGAGCTCAATCATGGATCATTGCAATATTCAGATGGGACAAATAGCCAATCAGATCCAGTGTTCTACAACCTACATTGGGAAAGACCAGTTCATGAAAGAGCTTCTTGGACGGAGTGTGAGGAAGGGTGACTCCATAGCTGAATCTCTCCCTGGCATCTCCATCCCCAAGAGAAACAGCGATATGAGGGGAGATATGGAGATCTGCTCCGATACAGCTACCATCATTGTGACACAGAAGATCAGCTTGCatggagagaatgaggaggaaCCCAACCCTGAGACTTCATGTCAGGACCACATGATAGgctccAGCTGTCAAATGAGAACCCTGGACAGCGGGATTGGCACCTTCCCCCTCCCTGACTCCGTCACCCGGGTCAATGGGCGCCACATTCCTAGATCTGAGTCCAGCCCCGACCGGACAATGGCGAGCGTTCACAGTCCCACTGATCCTGACCAGGACCTCCTCTCGGCCTCTGCTGCTCATTCCCCATCCCATGTGACAGTGCCGTCCCTGTCTGAATCCCAACCACATGTACCACCCACCAGTGCCCTGGGCCACTCCCTGTCTGACTCTACAGTTACTGGAAGAGGTTGTGGACAGGAAGCCCTGAGCCGCCTCCCCAGACCATCCACCTCAGATGTCATCAGAAGGAAGCGACTGAGTCAGATAGAGTTATGCAGCACCAGCCACGCAGTCACTACGGAGGCCCACGAGGAACaagtggagaagaagaggaacaCTAAGGATCTAAACTCACCCACTGACAGAGCCCCAAGAGTGTGCACATACTCAGGCAGTAGCAGTGACACCGAGACAGAGTCTGAAGGGAACACGCTAGGCTCCACCCAAAGCACCCTTACCAACAGAGCAAAGTCGAGCAACCAAGAGAAGGACGACCACagggggagtttctcccaatacCACTTGTTGCACAACCAGTCATCGCTAGAGGGCAAAGCAGGAGGCAGACTAAGCAAAGGGAATCGAGTGGACATGACGACAGGCGGCTGCGGAGGGGGGGTCCAGGTCGGCTCCAGAGACGTGTCCTTGGATTCCCTGAACAAGCTGAACAGCAGTGGGTTGGGGCTGTACCCTGAGACAGAGCTAAGGCCCAGTAGCGGTGACTGCTCCTGTTccgcaggggagagagaagaggactgcTGCAGCAGGGTTGACAACGAGCCCTCGTCGTCCAGCTACTACTCCAACAAGCCCGGGGCGGAGCGTGTGGGTTCTCTCAGCGATTCGCTTTACGACAGCTTCTCCTCATGCACCAGTCAAGGCTCCAACGATGTGTAGAGTAAGAAAGTGGAGGCCGGGGCCGATTCTGTTGGAGTCTTCTGTTGGAGTCCTCTGCTACTCCCACCAACCGAAGCACTTAGGTCATAAGGAAGGAGGGGATGTCATCGGTGATGTCATAAGATAAGGACGTGAACCCAGACTGTACGGTATGCATGACCTCTGAGATGGACAATTAAACTATAGGCTACAACAGTACCACCGTTCAAGGTGTGGAAAGCAATATTAGAAATTGTCTTGCATTATATATTTTTCCCCGAAgggggaatgtttttttttatcattgCACTGTAAAAATACTGTACAAAGTTAAGGAATTCAACTTGAAGACATAACTAGAGTAAATACCACCAAATCCAAATCAAACCAATCAGCAATATCATCAGGAGCAACTGATGATGCCTAGTAGTGTGAAGCAATACCTTAAGAATGATAATATGTGCAAAAAACTATTACGGTTGTTGGATGTGGATAGATGGTTTTCTCACGGATCATTATTTCTCAAAAGTTTTACTGCCACAGTGTTGTATGCCACAATGGCAGGCCTACACACCACAACTACCATCATGCAATACACTGCAACCCATACCATACAATCATAGCTCCTAAAGCCATTGTGTCAAATGTGTACGATTACTAGACTGCTGTGCTATTTTGAAAGTTGCATGGCGAACTAAAATGTGACACACATTAGACACATTATTTTTGAAGTGGCGGAATTTATACTTTATATTAAGTGACCTAAATACACGCATTTGCACATTTAATTGAACCACCAGTGCTGTGGAATCTTAAAGAATAGCATCCTGCATATTGAATGTACTGGAGTCAATATTGACTTTGAGTTGTAGTACAGATGAGAAATACATGATCAATACATGATCAATCATTTCTACCAGCAAGTCAAAACTGTCAAGCTGATCTTCAACTGCTATGTAGtggcttaaagggatacttcgggatatttggcaatgaagccctttatcttcTTCCctagtcagatgaactcatggatgctatcatgtctctgcatccagtatgaaggaagttagagttaGTTGTGTGAGCTAATGCTAACAAGTGTtggcgcaatgactggaagtatatctactagcatgctagcagttaccatagacttccagtcattatgCTAACACTATTTAGCAATGTCCTTCAAACTGcccataaaaatggtatccactaaTTAatttgactctggggaagtagaaaaAATCCTGAATTATCCCTTTAAGCAATCACCGTGCCATCACCATTGTACTTGGGTCACTCAGTATTTCATGTAAACATAGAACTGAACTAGTGTCAGAATGGTACTTATGAATCAGAAACTTCTGTTGGCTTCAATAACACATTTGCGGAGCAAAGTCTATGCTAGTAGCTCAGGGAAAATGCAACGCGTATACCTAGTTACCTTGAATATAAGGTTACAACTCATGGAAAATAaatgtttcatttttttaaacGGAAAACAGACATTTTTTGAAAAGTAAAACCTTCATGAACTGCAAGATAACATAACCGTTGAAACTGTGTCTCTTGTAGCATCATAAAACACTCATGTTTTGTATATTTTGTTTGTGTGTTAAAAACTGCGATTAAATTAATATCAGAATGGAGCATTGCTGACTGGTATATGcaatttaaaacatttaataatTGTGTAATGTTTGCCAATCATTCAAACTATATGTCTATTGATTGAGAACAGTTAAACTTTTCTTGATCGTTTCCTCGTTTTGTGACTTCCTGTAGTGTTTTGTCGatacaaaatgttttattttgtcgAATAAAAGCTACTACTGCAACCTTTTATCACTTTATCCTATAACACATTTGACACGTAGTATGAATAAATCATCATGCCAAACGTGCGTAATTTGATTCTGGTGCTAATCAAAAACAGACTCTGTACGTTTCATTGTTCGAACAATTTTCCATGAAACTGTTAATAATATGTAAGGAGAGTCTTGCTAAGACCATAATGTGTATTTTTCTAGCTGACGAGTATTTATATCCCACTTTTTGTACATGGAACTGTATAGTGGTGTTTAATTGTCCTACTTCACATCTTCTCTGCTTGATTGTTCCTTTGTAAGAGAACCTGTTACCAGCAGTGTTAGTTTGGTAATTACGTGTGCAATTTTGGCTGTTACATTAGACTTTTAATGCTATATTTTATGTAATCATTTCCCagacaaataataataaatgatTTCCTATTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750402 lncRNA downstream 10286 22997795 ~ 22998261 (-) True G1528841
TU1750401 lncRNA downstream 11056 22995919 ~ 22997491 (-) True G1528840
TU1750439 lncRNA downstream 15621 22992702 ~ 22992926 (-) True G1528876
TU1750422 lncRNA downstream 17238 22966264 ~ 22991309 (-) True G1528860
TU1749487 lncRNA downstream 56772 22951561 ~ 22951775 (-) True G1528052
TU1750527 lncRNA upstream 10681 23179123 ~ 23179322 (-) True G1528962
TU1750528 lncRNA upstream 11324 23179766 ~ 23180033 (-) True G1528963
TU1750529 lncRNA upstream 11595 23180037 ~ 23180310 (-) True G1528964
TU1750541 lncRNA upstream 27722 23196164 ~ 23248930 (-) True G1528972
TU1750629 lncRNA upstream 172058 23340500 ~ 23342444 (-) True G1529050
XM_021571309.2 mRNA downstream 695 22998590 ~ 23007852 (-) True LOC110495839
XM_021571308.2 mRNA downstream 30938 22964348 ~ 22977609 (-) True LOC110495838
XM_021571306.2 mRNA downstream 59857 22898570 ~ 22948690 (-) True LOC110495837
XM_036952277.1 mRNA downstream 59859 22897949 ~ 22948688 (-) False LOC110495837
XM_021571314.2 mRNA upstream 13377 23181819 ~ 23186607 (-) True LOC110495844
XM_021571315.2 mRNA upstream 45089 23213531 ~ 23223410 (-) True LOC110495845
XM_036952287.1 mRNA upstream 80598 23249040 ~ 23252371 (-) False LOC110495846
XM_021571317.2 mRNA upstream 80598 23249040 ~ 23264224 (-) False LOC110495846
XM_021571316.2 mRNA upstream 80598 23249040 ~ 23265087 (-) False LOC110495846
TU1749447 other downstream 122714 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 746085 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2436680 20571096 ~ 20571867 (-) True LOC110497093
TU1745849 other downstream 3278479 19722745 ~ 19730068 (-) False G1524755
TU1750687 other upstream 313098 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 374164 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1111296 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 1115149 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 1224933 24393375 ~ 24393684 (-) True G1529613

Expression Profile