RNA id: XM_021571313.2


Basic Information

Item Value
RNA id XM_021571313.2
length 4237
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110495843
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23185424 ~ 23198238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGTGTGCCACCACAACGAACCTGTCATGACAAGTATGGAGAGACATTTATCGATGGAGAAAGTCCTATAATTTTCTCGATTTGCCGAGCTCGGGGGAGATACAAAATTCTCACTGTTTGTCATGCAACACGACTGAAATATGTGCCGGCGGTAGCTCGATGGGTGACCACATGGAAAATATTGACGGTTACCTGATGAAATACACCAACCTGGTAACAGGATGGCAATATAGGTTCTTTGTCCTCAACAATGAGGCAGGGTTGTTGGAGTACTTTGTCAATGAGCAGTCCAGGCCCCAGAAACCTCGCGGGACACTCCCCTTGGCAGGGGCGGTCATATCCCCCAGCGACGAGGACTCCCACACCTTCACGGTTAATGCCATCAGTGGGGAACAATACAAGCTCCGAGCCACGGACGCCAAAGAGAGACAGCACTGGGTGAGCCGGCTGCAGATCTGCACGCAGCACCACACTGAGGCCATGGGGAAGAGTAACCCTCCGCCCAAGTCTCGCAGCTACTCCATGGCATCTCAGGGGAGCGCCAGCTCGCCCCTGTCCCAGCGCAGGCCTAGCCAGAACGCTGCCTCCTTCTTCAGCATGACTCAGCTCCACAAGGGCTCCTCGCTGTACTCCTCCAAGAGGTCCCTGCTGCCCGACCATTTGCTTGATGCCAGAGAGATGATGACCCAGGCCCAGGGCCAGCACCGAGACCTGATCCAGACCATCGAGGGCCTGCCCCCGGCCGCGGGCCCCCTCTCCCCGCTAGACCAGGACCTGCTGATGCTCAAGGCCACCTCCATGGCCACCATGAACTGCCTCAACGATTGCCTGCACATCCTGCAGCTGCAGCAGGTGGCCCGCCAGAGGAGCTCCCTGGGAGGGCCCACCATCGAGTGGCTGGAGCCCAAGCTGCCGGACATCCTGAAGAATGGCGGGCCCTTGGACAGCTTCAGCACCGAGGGAGGGCCACTGGAGGGTAGCCTCCTGGAGCTCAGTGCCACAGAGCCCTGCAGTTTCTCTGGGGAGGAGATTGACGGGGAGGACGAGGTGGAGGACGCGTTcacggaaaaggaggaggaactGGGGGCGGTGGAGGAGGAACGCAGTGTCATCCTACACCTGCTCTCGCAGCTCAAGCTGGGCATGGACCTCACACGGGTGGTGCTGCCCACCTTCATCCTGGAGAAGCGCTCCTTGCTAGAGATGTACGCTGACTTCATGTCCCACCCGGACCTGTTCGTAGCCATCACAGACGGCCAAGGGCCCGAGGAGCGCATGGTGCGCTTCGTTGAGTACTACCTCACCTCCTTCCACGAGGGCCGCAAGGGCGCCATCGCCAAGAAGCCCTATAACCCCATCATCGGCGAGAGCTTCCACTGCTCCTGGAGGGTGCCCAGGTCAGGGGAACCCGCCAAGGATGCCCCctcaaccccctctcctccccagggAAGCCCCACCACCGAGGGGGAGGACGGTAGTTACCAGTTGCGCTTTGTGGCTGAGCAGGTGTCCCATCACCCGCCCGTGTCGGGCTTCTACGCCGAGTGCCCCGAGAGGCGGATGTGTGTCAACACCCATGTGTGGACCAAGAGCAAGTTCATGGGCATGTCCATCGGGGTGTCCATGATCGGGGAAGGATgtctgtacctgctggagcatgacgAGGAGTACACCTTCACGCTGCCCTGTGCCTACGCCCGCTCCATCCTTACCGTGCCCTGGGTGGAACTGGGGGGAAAGGTTAACGTGAACTGCACCAAGTCGGGATACTCCGCAGTCATCACCTTCCAGACCAAGCCCTTCTACGGAGGCAAGCTGCACAAGGTGACGGCGGAGGTAAAGCACAACGCCACCAGCGCCGTGGTGTGCCGCGTTCAGGGCGAGTGGAACGGCGTGCTTGAGTTCAGCTACCAGAATGGCGACACGTGCATGGTAGACGTCACCAAGCTGCCCGTCACCAAGAAGCGCGTGCGCCCCAACGACAAGCAAGGACCAACTGAATCGAGGCGCCTGTGGCAGCATGTAACCGAGTCGCTGCGTCAGAAGGACATTGAGAAGGCCACGGAGTACAAGAGGATCCTGGAGGAGCGACAGAGGACCGAGGAGAGACACCGCACTGAGACCGAGACACCATGGAGGACCAGATATTTTGAGAGCGAGGGCGAAGGCTGGATGTATCACAAACCACTGTGGAAAACACCCACTCTGAAAACTTAGTCCTACCGGTCAGTGAGATCTATCATCGAGAACGGATGTAGCCACGAGACTGACGCTCTcttttggtttgtgtgtgtgtgcgcgcgaatGTGTGGGGTTTCCTAAACGGTCGAGGTAAAGCGCGACCTCCACTTACATGCATACGGATGCAAAGGTATTGGGGAAAGCCCTATAACGTGACGACAAGCTATATAGTTTCATCTCCCACTCGATGTACAACTCAAACCTCAAGGTAGTAGGTACAGGCTTTTGTGCTGATGATCACTTTTTGTATAATCCACTCTGAATGAGGACATTAAACCTTGAACAGATACAAGGTACTCCATTTACGCCGCCTTCACAATCGTATGACGATGCGCTCGTTTGGGTGGTTTTAAAGTGTTCAAGGATCACGATTCagagggagttttttttttttttacagtgatgTCGCACACGAGACCGAGAATGGAAGTGCATCTTTCAAAGTACGCGATTGATGTTCGACGGTGTGAACTGGATAGCTGCGTTTTGGGATATGATTGGCAAggcctgggtcatgttcattagggcatgcgACTGAATGTTTTAAAACGCAATACAACGGTAAATTAGTTATTGGATAAGTACATACAGTCCCTCCCTTTTTGacttttcttccgtttggtgcctaatgaacatgaccctgcacATATTATGTCACAGCTTggataagacacacacacacacacaacctgtcacTACAATGAACAAGTTTATAATTGGGACAATGTTCCTGAATTCATACTGTAGGTAATTAATGATATTACGCCTTTGGTTTTGCACAGACTTCTCCATTTGGATGATTCCATTGTTCAAAATGATTGACGAGGTTTGGCATGATAGTATTTTAACGATTTTAGGCCCCCCCCCAAAGTGAATGCATTTGTTGATATGCGATGTATGATAAAGTAACAATCATTCCTTTCGCAGTCCCAAAGGGATATAGTCCACCTTCCTGGAGGAATTTTGGAAAATGGAACGCATGATGAGCAATGTCTTTTTGTGTACTGCAAGTATTATTATACTCTGGTTACTGTCTGAATTCCACAATTTGTTTTCATATGCAAACAAATGTTTTACTTATTTTTCTGGTTCAAAATGAATGTTAATCTCCTGGATATCTGTCTGTTCTGATTTTTAAGAGCAGAATCTAACTTAATATCGTCACCTTATTAGTTGGTTTGTGAATGAGATTGCTCCCTCGTGGTGCTTCTTTTCAAAAGCTACAGTTATcacaccccccccctcccaatgTATGAAATACACAACACTAGTTGAGTCTCAACACCAATGCAGTCAATATCAGCCTGGAAAGATTCTCCCAACCCCTTATTTGATAGGCAGAATGCAAAGAGAAGACCTGCTTGATGCATGGGATTtgatttttaactctgcattgatAAGCTACTCTATCCACGTCATGGTGCCTTAATCACTCTTCCTGTGTGCTTCTTCCAGTCCAAGAGTAtagcataccccccccccccccccccccccagggccgGATTACCAGATTTGGAAGTCAGCTAATTCATAGCAGTTTCGtactgctattctacacattatgGCATGAGCCTGAGAACAATTAGCTGTTTTAAAGCTATATTGAGGCAATTCTACACATTATGCTATCTGGGGGCCCCCGCCCTCCAAGGGGAAGCAACCCCTTGAGGTCGGGGATGCCGGGGCACGTGCCCTGCGTGCCAGTTCTGTAATCTAGCCCTGTTTTGTTTCCCCCGTCACCGCTATGAATGATGCAATAGTATGTAAATATTGGTTGTTTTGAGGGTAGTTGTTGCATTCTTTCCTGGTTTGAAGAAAGACATGTTAGAAGCGCAGACCCCTGAATGGTGTTATACATGTTGACTTTGTTGTTTGGAATATTACTCGTTTGTCTTGCTGACCTGTGAAATGCACTGACATTGAAGGAAACATGACTCCTTGTAGACTAAGATATGTGTGGTAATGAATGATTAAATAAATTGCCTATCAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749647 lncRNA upstream 8226 23178179 ~ 23178444 (+) True G1528210
TU1749632 lncRNA upstream 24504 23161723 ~ 23162166 (+) True G1528195
TU1749575 lncRNA upstream 108034 23078430 ~ 23078636 (+) True G1528139
TU1749574 lncRNA upstream 108292 23078091 ~ 23078378 (+) True G1528138
TU1749569 lncRNA upstream 112556 23073809 ~ 23074114 (+) True G1528133
TU1749810 lncRNA downstream 149842 23348080 ~ 23348315 (+) True G1528313
TU1749827 lncRNA downstream 170843 23369081 ~ 23369294 (+) True G1528328
TU1749845 lncRNA downstream 195878 23394116 ~ 23394362 (+) True G1528346
TU1749849 lncRNA downstream 199280 23397518 ~ 23397747 (+) True G1528350
TU1749852 lncRNA downstream 205691 23403929 ~ 23404187 (+) True G1528353
XM_021571305.2 mRNA upstream 412996 22769391 ~ 22773674 (+) True LOC110495835
XM_021571303.2 mRNA upstream 433864 22750688 ~ 22752806 (+) True LOC110495834
XM_036952273.1 mRNA upstream 473136 22700342 ~ 22713534 (+) True LOC110495829
XM_036952272.1 mRNA upstream 545302 22617546 ~ 22641368 (+) False LOC110497098
XM_036952271.1 mRNA upstream 545305 22599333 ~ 22641365 (+) False LOC110497098
XM_021571319.2 mRNA downstream 70637 23268875 ~ 23273932 (+) True LOC110495847
XM_036952288.1 mRNA downstream 120505 23318743 ~ 23342541 (+) False LOC110495849
XM_021571320.2 mRNA downstream 120507 23318745 ~ 23342541 (+) False LOC110495849
XR_002469480.2 mRNA downstream 120507 23318745 ~ 23342541 (+) True LOC110495849
XM_021571328.2 mRNA downstream 355612 23553850 ~ 23564696 (+) False LOC110495853
TU1749630 other upstream 25379 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 575218 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 575218 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 2429258 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 2702957 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 1322497 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 1806523 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1950745 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1956495 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 2368233 25566471 ~ 25571346 (+) True G1530785

Expression Profile