RNA id: XM_021571316.2


Basic Information

Item Value
RNA id XM_021571316.2
length 5643
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110495846
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23249040 ~ 23265087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcaatgaTGGCGGAATATTGATGACATTAAACCAGAAATTCTTACAAATATGACTATTTCTTGAACAAGCtggcaaaaaaataactttgttGGACGTTTTTAATCTTCATAGTAGTATTTGTCACCGGTTTCACAAAAGCAAAGGGTTTAAAATGTCGGAAATGCGTGTTTTGCATCAACGGATACACTCTGTCATCATGGACATACTAGCCTCCGCTGCGGTTACAGAGATTTGTAAATTAGTAGAAGATTGTTGTGGAGCATTACGTGCAGAAGTCTCTCAAAGCAAAGAGCAAATCAAAATACTACAGAAGCAACTCAGCCTGGCTGAGTCGAGTTACGGGTCGGTGAGTTGCAAAGAAGGTCAGACGCCTGTCAGCAGCGGCTCACCGATAAATAACAGTATTTCGGGCAATTCCCCCGCGGACAATGAAGATGATGCTGACGACACTCACGATGACGAAGATTTTCAGCAGTTCTTTGTCTCTGAAGTGGAGTTTCCCCCCGAGCAGCAGCATTGTAAGCAGGAGTGGATCCCCAGTCTGGGGAAAGATGACTGGAACCCCATacagattaaagaggaacaggGGGAATTCAGTATCATCCAGGAGGAGGAAGACACTGTATTCACTCCTGCCTGGGTGAAAAGTGACTATGATCAGTACTCAACTCAGTCCTCACAAACCCAAAGTGAAAAAGACAGAATGGACTCGACTGAACAGATCAAAAGAGAACCTAAGGAAGATGATTCATGGACAGAAAAAGGACAAAGCTCAAAGGGTAGAAAATCCATGGATCTGAAATCACCAGTGGAAAGGAGACACACAGAAGTGCAACCATTTTGCTGTAGTGATTGTGGGGAACGTTTCACTCAGATGGGAGAACTGGATGCTCATAGGAAggctcacacaggagagaaaccgcaTCGCTGTGGTGAATGTggcaaatgttttactcaagTTGGGTATCTGAACTATCACATAAAgactcacacaggggagaaacctcaTCGCTGTCATGATTGTGGCAAATGTTTCTTTCGAGTTGGTGATCTGACACTTCATATGAGGATTCACACAGGGGAAAAACCGCTTTGCTGCCAGGTCTGTGGCAAATGTTTTGCTCGTCCTAGTAATCTGAGGTCTCACATTAGGATTCACACAGAGAAATCTTACAGCTGTCATTATTGTGGCAAATATTTTCGTCATAAAGGTAATCTGACAGCGCATATGAGGATTCACACGAGGAAAATCACCTTGTCGCTATAGTAGCAGATCTTTCACCACTGCCGATAATCACATGAGCCATTTTTAAAGTATATTGCTGTCAGGATTGTTGTAAATGTTTCTCTAATTGTTAGAATATGAGGAGACCGAGGTGAGGAACCACATGCTACTATGACTGGCAAATATTTcataatcttaggtcttctgagatctcttttgtttgaggcatggttcacttCAGGCAACGCTtcatgtgaatagcaaactcacattttgtgagtattttatttatttcagggCAGCTTTAACCAACATCTcaaatctcgtctcattgattggactagctgagtcctgactccaattagcttttggagaagtcattagcctagtggttcacatactttttccaacttaTACCGTGAATGTTTAGAATAatatattcaatatagacaagaaaaaatacaatttgtgttattagtttaagcacattgTGTTTGTCTACTGTTGTGACTTCGAGGAagatccaggtaattccaaagggttcacatactttttcttgcaacTGTACTCCTCtggcagatacacacacacccctttttAAACTATTCAAAGTCAAAGATAGATCCAACCCTTGGCTTTCAGTTTAGCTCTTTCAGATTAGAAGTCGGACCTGGGCCAATTCAAGGAAAACTGACTCTGTAGTGGACTGGCAATTTAGTCCACTACAGCCTCTAGCTGACACGATGGTTAACCTGTCAACTTCTAGTGAAtctttttgttttcatttcaacaattTACTATCTGTGACGTGCTAGATGCCTTTTCTTAACAttgatgttttaaaaaaaacaacctgTGACTGATATTCTTGATACATTTTTGCTGCAGCTCACTGCCCCCCTGATTGCTGTATTATTAACCCATATTTTTAACCTGACGATTATATATCTGGTACTACCCCTAAAGTTTGGAAGgcggcccatgtactcccccttcACTAAGATGGTGACCCTTGTGACCTAAATACTTATTGGCCTATTTCTAAACTTTCTTGCCTTGCTAAAATATTAGAATACTTGATTAATTCTCAGCTAAGAACTTTATCTTTGAAATGTTTTCTAAATGTACATCAGTCGGGTTTTAGACCAGGTCATAGCCCTATCTCTGCTccatccctagttataaatgatgtggTTAGCTGTATAGATGAAAGGCAACATTGTGCTGCCCTCTTCATTAACCTGTCAAAGGCTTTCAGTACTGTTAATCACTCACTGCTAATACAGAGGCTTTCAATTGACCTAGACCAGGCTGCATGTAACTGGTTTAAAAGTTACTTGACAGATATAACTTAATGTATATCTCCTGATGGTGTTAAATCAGGTTTTCTGGATATTAGGAAAAGGTGTCCTTCGGGTTGATTCTGGGTCCTGTACTTTTTATATTAACAatatcaaattgtttgtaaaAAATTGTAACCTGCACTTGTATGCCAATGATACTGTTGTGTATGCTATTGCCTCCACCCTGTTGaccaggctctatctgaactTCAGTCTGCCTTCATTGTATTGCAGAAAAACTTTATTGACCTAAAATTAGTACTGAAAACTAAGTAACATCTTGTTCTCTAGAGAGCATAAAAATAAGTTTGTACTTTGGATGGTCACTTTTTACCCACTATTGAGTACTTTCTTCCTTTTGAAGTTATGATAAAACATTTTATGGAAAAGTTATTGAATGATTTCTTGAAAAGAGTGGGAAccctgtttttaaaaaaaacatatcacAATTACTTCAAGCGATCCATGTGTTTTATAACTAGTATAATATAATTTTTGCCTTGGTTATTCATTTTACAGTTTCATGTTACATTACTCTTACTTTGAAGGATAAAAAAAAACCTTGCCCCGGAAGTTCTTCATTACTGTTGGCTTCACCGGTGACGGAACACAACACACGCTAGCCAGCCATTGGCATTCTCTGGGGACAAAATGTCTAAATTGGAGTTGTTGAGAATGATTTTTAACCAACGATGTACAGGCGCTGCAGATGAGATATTCAGAGCCGTTGCAAAAACGATATCGGAGTACCAGGACAACGTTAATCTATCGAAAGAGGACAACGGCCGTCTACAGGGGCTGCTTGACGTCATCCTGAAACCTGAGATAAAGTTGTATAGAGCAGATTTTGAGCAGTTCATTGTCTCTGAAGTGGAGTTTCCCCCTGAGCAGCAGCACTTTGAACAAGAGTGGAGCCCCGATCTGGGGCAAGATGACTGGAACCCCATacagattaaagaggaacaggGGGAATTCAGTATCATCCAGGAGGAGGAAGACTCTGTATTCACTCCTGCCTGGGTGAAAAGTGATTATGATCAGTACTCAACTCAGTCCACACAAACCCAAAGTGAAGAGTACAAAGACAGAACAAAACCTAAGGGAGTGGATTATTCAAAGCCAACCCGTGGCTCTTGGCCCCAGCCCAAATCGAGGAGGACACCGACAGAAAATAGAAAAAGCTTTATCAGCTCCAAGAGGAGAAAATCAATGGATCTGAAATCACCAGTGCAAAGGAGGCGTCACACAGAAGAGAAATCATTTTGCTGTAGTGATTGTGGTGAATGTTTCACTCAGATGGGAAAACTGAATTCTCATAGGATCATGATACACTCCAGAGGTAATCAGTTTCGCTGTGATGAATGTGGCAAATGTTTTGCTCAGTGGGGATATCTGAATTCTCATATGAGGATTCACACAAGGGTGAATTGTGGCAAAATATTCACTCAGTCTGACCGTTTCGAACCCTCCTTGACCACGTTGAAGGATCGCACAGGGGAGAAACTTTATTGCTGTGGTGAATGTGGCAAATATTTTTCTAACACTGGGTCCCTGAATTATCATAGGAGGTCGCACACAGAGAAGAAATCGCATCGCTGCCACGATTGTGgcaaatgtttttataaatgtatgGATCTGAATATTCACAGGAggattcacacaggggagaaaccatatCGCTGCCAGTTCTGTGGAAAATGTTATAATCAGCAGACTTCTCTAAGTTATCACATGAGGAATCACACAGAGACATCTTGTAACTGTCATTATTGTGGCAAATATATTCGTCATAAAGGTAATCTGACAGCGCATATGAGGATTCACACGAGGAAAATCAGATAATTGTTCTTTAAGATAATCAGATCTTTAATTACTGGCAGTCACATATGACAGTCATATTCATATGCacaatgtatatatgtatatgagtgCACATTAAGATAATCAGATGAGCAATAAACTATTTTGCTGTCAGGATTGTTGTAAATGGTTCACTCATTCCAATCTGAATAGtctggggagacagaggggaggaaccAAATTAATACCATAACTGGCAAATCGTTCACAACTGCCTTTTATTTGACACTGCGTATGAGACATTCACACATTACACGTTTTCTGTAGAAAATGCTTTAGTGCCAGAAGTGCATTGAATagtcatcagagaacacacagcGAAGAACAACCTTCAAAGCCTAAAGGTTCACCCGAGGACACACTTGATTGACCTTTACTCTGGTAGCCCTGAAGCCTGAtctctattcaaatcaaattgtattggtcacatacacatatttagtagatgttcTTGCGATTGTAGCAAAATGCttttgttcctagctccaaccgtGCAGTAGTATATAACAATTCAAAAAATGCCTTGGAACAAAGGAATTGGATCCTTGAAACAAAGATGTTCTGCTTAACCTGTCATTTTCCATTCTGTATTGGCAGTAACTTTCATTAAGTGTGAAACTATTTTTCCACTGAGATCAGAACTTGTGGTTAATTGTGTAGCCCGTCTCTTCCAGAAACCATTTTGTGTGCTTCATTGTTAAATATCACCCATCGTCTATGATGATGCATGTATGTCTCATTCAGAATTACTGTTCTTGTCACTCAGAAGAATAATTTGCCTTTTAGCCATTTGCCATTTTAGCAGTTGTATCTTGAAGAGGTTGCTGACTTTGCAGAGCGATCTCCCAGTAGGCCTACTGTTTGCGCCATTAAATACGTTTTCTGAACATGATGACCACCACCTGACTTGTCTCTTTTCACATTGACATCTTCATTGGAGCCTTCAAGGCCATGATACACTTGGAATTTGTTGAGGTAATGTTGCTACTGTATCATGGGCTTAAGAGTACACATGGAGAGAAACATGACTGTGTCCTGTGTGGGGGAAGGCCATCACAGAAGATTGAGGCACATGTTGTAACTTCTACCTGTTGAGTGGAGACACGCCACAGTTCTTAATTTAAAAGTCATCCAGTTTTTCAGAAgtatctgattacaatatttttgctggtaatgtaacTGATTAGTTGCATAAAGAGAGAATCAGCAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750541 lncRNA downstream 110 23196164 ~ 23248930 (-) True G1528972
TU1750529 lncRNA downstream 68730 23180037 ~ 23180310 (-) True G1528964
TU1750528 lncRNA downstream 69007 23179766 ~ 23180033 (-) True G1528963
TU1750527 lncRNA downstream 69718 23179123 ~ 23179322 (-) True G1528962
TU1750478 lncRNA downstream 170395 23078416 ~ 23078645 (-) True G1528915
TU1750629 lncRNA upstream 75413 23340500 ~ 23342444 (-) True G1529050
TU1750641 lncRNA upstream 91904 23356991 ~ 23357190 (-) True G1529062
TU1750663 lncRNA upstream 122419 23387506 ~ 23387761 (-) True G1529083
TU1750664 lncRNA upstream 123149 23388236 ~ 23388473 (-) True G1529084
TU1750669 lncRNA upstream 129086 23394173 ~ 23394483 (-) True G1529089
XM_021571315.2 mRNA downstream 25630 23213531 ~ 23223410 (-) True LOC110495845
XM_021571314.2 mRNA downstream 62433 23181819 ~ 23186607 (-) True LOC110495844
XM_036952284.1 mRNA downstream 80596 23024772 ~ 23168444 (-) False LOC110495841
XM_036952280.1 mRNA downstream 80598 23008547 ~ 23168442 (-) False LOC110495841
XM_021571321.2 mRNA upstream 73670 23338757 ~ 23362793 (-) True LOC110495850
XM_036952291.1 mRNA upstream 194749 23459836 ~ 23478448 (-) False LOC110496920
XM_036952290.1 mRNA upstream 194749 23459836 ~ 23478462 (-) False LOC110496920
XM_036952289.1 mRNA upstream 194749 23459836 ~ 23478565 (-) True LOC110496920
XM_021571325.2 mRNA upstream 214471 23479558 ~ 23529053 (-) False LOC110495851
TU1750411 other downstream 80449 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 363207 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 986578 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2677173 20571096 ~ 20571867 (-) True LOC110497093
TU1745850 other downstream 3523509 19723434 ~ 19725531 (-) True G1524755
TU1750687 other upstream 216453 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 277519 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 1014651 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 1018504 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 1128288 24393375 ~ 24393684 (-) True G1529613

Expression Profile