RNA id: XM_021571319.2


Basic Information

Item Value
RNA id XM_021571319.2
length 1749
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110495847
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23268875 ~ 23273932 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTTTTATTGTTGCTGGCGAGTCGCTTGTAGCGTTGATTTAGTAAATCATCATTGGAGcggattttgttttgtttgtgatCAACATCATTTTTACGTGGACAAAGCCATATTCGTTGAATCCTCAACTCTCAAACAATTGAAAATGTCTCAACTACAGTTGCTGCGTGAGTTTTTAAATGAGCGTGTAATGGCTGCTGCTGTCGACATTTTTGGGGCAGTTGAGAAAACGGTAGCTGAGTACCAAGAGGAAAATGATCGTCTACGGAGACTGCTGCGGATAGATTCCTTGCagctctctctagctgtctctgaAGAGGAGGTTCTCCCTGAGAATCAGAATTGTGAGCAGGAGTGGAGCTTCAGTCTGGGACAGGAGAACACTGAAGCCACACAGATTAAAGAGGAAGAGGAGCAAATCAGTCAGGAGGAAGAACGGCTTCAAGAGCTCTTTGATACCAAAAATGCCACTTTCACTCCTGCCTGTGTGACAAGTAAATGTGATCAGGTGGACCCCTTGACTCCTCAAATCCAGACTTTGGAGAACCGAGAGTGTGACCCGAAACAAGTGAATCTCACACCTTTTGGTACTGTGACTCAGCTAAAAGCTCTCAACATTCCATGTGACCCTCCAAATAATCAAAACAATGCATCCAGCCACAGCACAGCCGAAAGCAGTGACCCAATAGGACTCGACAGCAGCCCAACATTAGATCCCAGCCCACCATTGACTCACAACCCACCATTTAAGAAACACAGATCCAAACCCAGCAACACAGCTATAAAAACTCTCCGCTGCTGTGACTGTGGTGAAACATTTGCTCTAAAAGCTGACCTGCAGATGCATGTGACTCTCGCCAAGAAGCAACCCCGTGAATGCCAATTCTGCAAAAATTTCTACAGATCTACCTGTAAACTTTTGGCCCATGTCAGACTGTGTCACGATGGGAAAACCAGCACCTGCCCCTATTTTGGAAAGACCTTCAAACTAGAAGGAGATCTGTCCAAGCACatgattcacacaggagagaaacgatttagctgtggtgactgtgggaagagctttAATCGCAAGGGGAATCTAACCCAACACATACTgactcacacaggggagaaatcatTTAGttgtggtgactgtgggaaaagcttcagtCTCAAGAGGAACCTAACCGAACATGTTcggactcacacaggagagaaaccatttagctgtagtgactgtgggaagagcttcaaacAGAAGGGACACCTAACCATGCATAaactgactcacacaggagagaaaccatttagctgtggtgactgtgggaagagtttcaatCGCAAGCAGCCCCTAAACATGCATAaactgactcacacaggagagaaaccatttagctgtgaTGACTGTGGGAAAAGTTTTAATTTGAAGGACTCCCTAAAGAAACACAAATttactcacacaggagagaaaccctttagttgtggtgactgtgggaaaagcttctATCAGAAGGGGCACCTGAACGTGCACAAACGGACTCATACTGATTCACAcgagagaaaccatttagctgtgggAAAAGCTTTAGTGTCAAGGGGAACCTAACCATGCACAAACTGACTGCTGCTCTGGCTAGGATTCCGTCGTAAGTAGAGGTcagccgattatgatttttcaacgccgataccgataattggaggaccaaaaaaagctgttgccgattaaaaaattaaaaaatagtttattttatttttttacatttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749655 lncRNA upstream 78756 23189778 ~ 23190119 (+) True G1528215
TU1749647 lncRNA upstream 90431 23178179 ~ 23178444 (+) True G1528210
TU1749632 lncRNA upstream 106709 23161723 ~ 23162166 (+) True G1528195
TU1749575 lncRNA upstream 190239 23078430 ~ 23078636 (+) True G1528139
TU1749574 lncRNA upstream 190497 23078091 ~ 23078378 (+) True G1528138
TU1749810 lncRNA downstream 74148 23348080 ~ 23348315 (+) True G1528313
TU1749827 lncRNA downstream 95149 23369081 ~ 23369294 (+) True G1528328
TU1749845 lncRNA downstream 120184 23394116 ~ 23394362 (+) True G1528346
TU1749849 lncRNA downstream 123586 23397518 ~ 23397747 (+) True G1528350
TU1749852 lncRNA downstream 129997 23403929 ~ 23404187 (+) True G1528353
XM_036952285.1 mRNA upstream 70637 23185424 ~ 23198238 (+) False LOC110495843
XM_021571313.2 mRNA upstream 70637 23186670 ~ 23198238 (+) False LOC110495843
XM_021571312.2 mRNA upstream 70637 23186996 ~ 23198238 (+) True LOC110495843
XM_021571305.2 mRNA upstream 495201 22769391 ~ 22773674 (+) True LOC110495835
XM_021571303.2 mRNA upstream 516069 22750688 ~ 22752806 (+) True LOC110495834
XM_036952288.1 mRNA downstream 44811 23318743 ~ 23342541 (+) False LOC110495849
XM_021571320.2 mRNA downstream 44813 23318745 ~ 23342541 (+) False LOC110495849
XR_002469480.2 mRNA downstream 44813 23318745 ~ 23342541 (+) True LOC110495849
XM_021571328.2 mRNA downstream 279918 23553850 ~ 23564696 (+) False LOC110495853
XM_021571327.2 mRNA downstream 279924 23553856 ~ 23564696 (+) True LOC110495853
TU1749630 other upstream 107584 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 657423 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 657423 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 2511463 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 2785162 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 1246803 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 1730829 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1875051 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1880801 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 2292539 25566471 ~ 25571346 (+) True G1530785

Expression Profile