RNA id: XM_036952289.1


Basic Information

Item Value
RNA id XM_036952289.1
length 1101
RNA type mRNA
GC content 0.50
exon number 7
gene id LOC110496920
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23459836 ~ 23478565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAGTCCGTTGACATGCCTGCTTCAGGTGTGAGAAGTGGAGACTGGGTAGGAAAGAGAGGGCGGTGGGTTCGGAGGGTCTCGGCATATCTGGACAtacacacgctacacacacacgcCCAGAGCAAGAGGACCAAGAGCCCGGATCCAGCACCAGGTACCTGTATCAGTGGCCTGAGGAAACAGCCAGAGAAGATGGCAAAGCTCAGAGAGTCATCTGGGACAGAGACGGAGACCATGGCTTTCCACAACCTCTGTCTGCAGGTTCTACTGCTAACGGCCTTCCTCTCCTACTGCGCTCACTCAGATGGCACAGCGGAGAGCAAGCTCCACAGACTACTGAAGAAAAGAGATGTGGGCGGAGGTATGAAGCCTGTGGGGGTGGCAATGACCCCCTCCAAGGCCAAAGAGTTCCTGACCTCCCTACGGAGGCCCAAGAGGAACATCTGGGACCGCAGCAGGCCAGATGTGCAGCAATGGATCATGCAGTTTATGCACATGGGTTATGACGAGGCGAGGCTTGAGACTGACCTGTCCTACTGGATGGACCTGGCCCGGTCGTCAGACCAAGGTCGCCAGCACCATTATGACGAGAACGCTCCCATCGGGCCCCAGGACCCCGATTCCTACAGACACGGCGCCAATGTCAATTATGACTACTATTAATTGGCCCACTGTGATTTACTCAGCTTCTCTGTCTCAACATAAAAATCACATGAGCGTAAAGGGATAGTTCTGATATTTTACATATTAAGATATGTGTTCCCTTCCTGAAGACTACTTCAAAGGAAGGAAACAAATATGTTAGGTAAAATCGCTGAACTGTCCCAATCACATAAGTGATTCCCTCTTCTTCCTTCTGCAACTTATCCCTCTGATGCTATTCTGCACACCTACAGTAATGTAGCCATCTCTGTAATGCAAGAAATAGAGCTAAGACATGCCTCTCCCAGACTATGGATTGGGTTTCACTGTCTCTACTTTGTATCCTTTGCTGTCTGGGAGATTGAGACCTGCTGATGTACATGCTGTGATGGGACCACAATGCATTGGGTTGATCTGTCTGAATAACTAAATAAAGACAGTCAAAACCTTTAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750679 lncRNA downstream 54830 23404735 ~ 23405006 (-) True G1529099
TU1750669 lncRNA downstream 65353 23394173 ~ 23394483 (-) True G1529089
TU1750664 lncRNA downstream 71363 23388236 ~ 23388473 (-) True G1529084
TU1750663 lncRNA downstream 72075 23387506 ~ 23387761 (-) True G1529083
TU1750641 lncRNA downstream 102646 23356991 ~ 23357190 (-) True G1529062
TU1750738 lncRNA upstream 22699 23501264 ~ 23586833 (-) True G1529156
TU1750780 lncRNA upstream 86753 23565318 ~ 23570351 (-) True G1529193
TU1750798 lncRNA upstream 112436 23591001 ~ 23591228 (-) True G1529206
TU1750814 lncRNA upstream 135040 23613605 ~ 23614006 (-) True G1529222
TU1750857 lncRNA upstream 184046 23662611 ~ 23662833 (-) True G1529250
XM_021571321.2 mRNA downstream 97043 23338757 ~ 23362793 (-) True LOC110495850
XM_021571316.2 mRNA downstream 194749 23249040 ~ 23265087 (-) False LOC110495846
XM_021571318.2 mRNA downstream 194749 23249040 ~ 23265087 (-) True LOC110495846
XM_021571317.2 mRNA downstream 195612 23249040 ~ 23264224 (-) False LOC110495846
XM_036952287.1 mRNA downstream 207465 23249040 ~ 23252371 (-) False LOC110495846
XM_021571325.2 mRNA upstream 993 23479558 ~ 23529053 (-) False LOC110495851
XM_021571323.2 mRNA upstream 993 23479558 ~ 23541681 (-) False LOC110495851
XM_021571326.2 mRNA upstream 63846 23542411 ~ 23543631 (-) False LOC110495852
trnat-ugu-38 mRNA upstream 163306 23641871 ~ 23641943 (-) True trnat-ugu-38
XM_021571338.2 mRNA upstream 173872 23652437 ~ 23660203 (-) False wdsub1
TU1750411 other downstream 291245 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 574003 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1197374 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2887969 20571096 ~ 20571867 (-) True LOC110497093
TU1745850 other downstream 3734305 19723434 ~ 19725531 (-) True G1524755
TU1750687 other upstream 2975 23481540 ~ 23541256 (-) True LOC110495851
TU1750685 other upstream 64041 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 801173 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 805026 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 914810 24393375 ~ 24393684 (-) True G1529613

Expression Profile