RNA id: XM_021571325.2


Basic Information

Item Value
RNA id XM_021571325.2
length 2253
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC110495851
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23479558 ~ 23541681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGAGAAGTGGTTCTGAAAGAGGGGCTCCATGAAAAATGACAGAGGAGGTGATAGTTATAGCCAAGTGGGACTACTCGGCTCAGCAGGAACAGGAACTTGACATCCGGAAAAACGAGCGGCTGTGGCTCCTGGATGACAGCAAGACGTGGTGGAGGGTGAGGAACGCCTCCAACCGGACCGGATACGTCCCCTCTAACTATGTGGAGAGGAAAAACAGCTTAAAGAAGGCCTCGCTGGTGAAAAACATCAAAGACACACTCGgCCTGGGGAAGACGAAGAGGAAGACGAGTGCGCGCGATGCCTCTCCAACACCCAGCACGGACGCAGAGTACCCGTCCAATGGTGGCGGAGGTAGCAGCGCCGAGCGTATCTATGACCTCAGCATCCCAGCCCTGGTCAAGTTCGCCTACACGGCGGAGCGGGAAGACGAGCTGACACTGGTGAAGGGGTCAAGGGTCATTGTCATGGAGAAGTGTAGCGACGGCTGGTGGCGAGGGAGTTCTGAAGGTCGGGTAGGTTGGTTCCCCTCTAACTATGtcctggaggagggagaggaggaggccgTCTGGGGGGACCTAGGCGGAGGTTACCCAGGACAGGGGGCAGGGTCGGGAGGGGTGACCAACGGGACCACCAGGGCGATCCACACTGTTCAGACGCTGTACCCCTTCAGCTCTGTGACCGATGAGGAGCTGAACTTTGAAAAGGGCGAGGTGATGGAGGTGCTGGAGAAACCGGAGAACGACCCTGAGTGGTGGCGGTGTCGGAACGCCCGTGAACAGGTGGGCCTGGTGCCAAAGAACTATGTGGTTATACTTAGCGACGATCCAGCCCCCGGGGGTGGGATGGGCTCGGGCCCCCACTCGCCCCAGATCAACTACACAGGGCCGGCCCGCGTGGGAAAGTTTGCCGGGAAGGACTGGTACTATGGGGGAGTGACCAGGCATCAGGCAGAGTGTGCGCTCAACGAGAGAGGAGGTCAGGGAGACTTCCTGGTCAGAGACAGCGAATCATCGcccagTGATTTCTCCGTGTCCCTCAAGGCGATGGGAAAGAACAAGCACTTCAAGGTTGCGCTGGCGGAGGGGGTCTACTGTATCGGCCAGAGACGCTTCAGCAGCATGGACGAACTGGTGGAGCATTACAAAAAAGCCCCGATCTTCACCAGTGAACATGGAGACAAACTCTACCTGGTCAAACCTCTGCTGTGACCACACACAAATTCTCGCGttcatacatttacacacacacacacactccggacCCCGGTGCTCGGCCTGGCCTAATAACAAGCCTTATTACCGGACTTGCGACTGACTGATTGGGCACAGCAATATCCCCTGGTCTGCCCATGACCCTTCAATACAGGTGCTAAAAGTCACCATAAACTCAACAGAGAATCAGTTAGCACAGAGAGAGACTCAAATGGTACATGTTGGCCACCGTAGCTCAGATTCCTTTCAGAATAATGACATTGAGTCCTGTCCAGAAGTGTCCAGAGAACAGCTTCAGTAAGGGCCCGTCTGTAAGCACCCGCTCTTTGCCTTGGCTGACAACTCCACCTCCTAGTAAAAGCCCTGCCGGTGCCTCCTAGGTTTTTGGAGTGAGCACGGATGGGGATTTACAGTCAATGGTTCCTTCACAACAGCTACATACGCTATGAAAGTGAATATTTAATGTGACCCGTCCCTTGCAGAAAGTAGTATTACGTTTCCATAGACTCTTGTACCAGAAAGAAAGGCACCACAAATGGTACTGCATTAACCAGATGAGGAAAGGACGCCCTCTGTAGGTGTATTGTGGAATGGACACGGTCAGGAAGCTGCGCGTTGAATGTCCGTGGATGTATACCGCCGACCATGTGCCACACCCCCATACTGCTCAAATGTGCCCCTAACGTTCTCTTCGAATCCACTGCTTTCCTCAACGTCCGAGTGGAAACATCGCTGACCGAGGACGGAGATTCAAGAGCGATAGGAAAACGTTTAGTTGGTTGTCTGTTTGCCAATCAAAGTCTGTTCAAAATTAGTTTCCTGcttttaaaaatgaaaaactgtGTCTTAATGTTACTGAGCACTGTTATTTAAATCTTGTTTTCAgctgtgtatgtatatattaaAAAGAAGAATAAGGTGAATATTATATGATTAGATACAGCGGAAGGTACTGTACTCCAAGATGGTGTGGTGACTGAGGATTGAAATACTTTTGTTCAATTAAAAGTTTTGCCGAAATAAGCTTTCTGGTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750679 lncRNA downstream 74552 23404735 ~ 23405006 (-) True G1529099
TU1750669 lncRNA downstream 85075 23394173 ~ 23394483 (-) True G1529089
TU1750664 lncRNA downstream 91085 23388236 ~ 23388473 (-) True G1529084
TU1750663 lncRNA downstream 91797 23387506 ~ 23387761 (-) True G1529083
TU1750641 lncRNA downstream 122368 23356991 ~ 23357190 (-) True G1529062
TU1750780 lncRNA upstream 36265 23565318 ~ 23570351 (-) True G1529193
TU1750798 lncRNA upstream 61948 23591001 ~ 23591228 (-) True G1529206
TU1750814 lncRNA upstream 84552 23613605 ~ 23614006 (-) True G1529222
TU1750857 lncRNA upstream 133558 23662611 ~ 23662833 (-) True G1529250
TU1750859 lncRNA upstream 135779 23664832 ~ 23666137 (-) True G1529252
XM_036952289.1 mRNA downstream 993 23459836 ~ 23478565 (-) True LOC110496920
XM_036952290.1 mRNA downstream 1096 23459836 ~ 23478462 (-) False LOC110496920
XM_036952291.1 mRNA downstream 1110 23459836 ~ 23478448 (-) False LOC110496920
XM_021571321.2 mRNA downstream 116765 23338757 ~ 23362793 (-) True LOC110495850
XM_021571316.2 mRNA downstream 214471 23249040 ~ 23265087 (-) False LOC110495846
XM_021571326.2 mRNA upstream 13358 23542411 ~ 23543631 (-) False LOC110495852
trnat-ugu-38 mRNA upstream 112818 23641871 ~ 23641943 (-) True trnat-ugu-38
XM_021571338.2 mRNA upstream 123384 23652437 ~ 23660203 (-) False wdsub1
XM_036952297.1 mRNA upstream 123384 23652437 ~ 23660989 (-) False wdsub1
XM_021571337.2 mRNA upstream 123384 23652437 ~ 23661730 (-) False wdsub1
TU1750411 other downstream 310967 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 593725 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1217096 22262056 ~ 22262462 (-) True G1527230
TU1746271 other downstream 2907691 20571096 ~ 20571867 (-) True LOC110497093
TU1745850 other downstream 3754027 19723434 ~ 19725531 (-) True G1524755
TU1750685 other upstream 13553 23542606 ~ 23543493 (-) True LOC110495852
TU1751209 other upstream 750685 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 754538 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 864322 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1621015 25150068 ~ 25150994 (-) True G1530967

Expression Profile