RNA id: XM_021571336.2


Basic Information

Item Value
RNA id XM_021571336.2
length 2106
RNA type mRNA
GC content 0.43
exon number 8
gene id LOC110495857
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23565587 ~ 23570089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGACCGGATGTACATGGAATGTGCAGCAGGAAATGCTAACCGCATTAGCTAACCATCCATATCGAGGTCTCCACTCTCACCGGCACACGAATTGTCTAATTCTGGAATCATCATCAGCCAAAATGAGTGCTGCTCCCAACCACAGACGGACCAAGCCTGGTGGCGTGAAGACAGGCTATCCAGGCCAAGCCCCCGCCAACGGTGTTACGGGACCCACTTCCCAGATCCCCGGGCTGTGCCAGGAAGCCACTGAGGGTGCTCCTGAGGCCAGGACCAGCGGAAGGCGTGTGGGAATATTCGACTCCGACTCCGACTATGTTAAACTTGCCAAAGGAGGGGGACAGAAGGGTTTACTGTGGCATGAGGACAACAAGGAGGAGGCTAGGCCTAATAAATCCTACAACTCACCTGATTGGTTCTCAGCCGAATCTCAGAGCGGAAGTAAAGCAGCATCCCCTGATGATTGTCAAGGATACGGAAAAAGGCAACCTCTAGCTGCTCCCTTCGGTACTGATGATATTTCAGCCTGGGAAAGGGAGAGTGATAGCTATAAAGAGAAGAACCCCACAGTCACTGATGCGTCCAGCCAAATGGAGAACATGTCTCTAAGCCAAGGTGGTTATATGGAGGTCAACAAATACAAGAAGACTCAAAGTGATTTTACTATGGACAGGTCCGTTGAGAAGAAAACTGCTCCCGTGAGCATGTCCAAGCTGCTGAGCTTTGGCTACATAGAGGATGAGAAGAAGTCCACCAACGAGGATGACTGCTCAAGTGTGACCTCTGAACAGACGAGCACCATCGCACCTGAGGATGAAGACCTGGAATagggaggagaacagaagaggtcCATCTGGGGTAGAAAACAACAGTggatacacacacccacacacatgccATTCACTCTacggtctgttctctctctctctctctccctgagtgaCACACTTTCTCTCATTACTGTACATCCCAACTGTTATGTTTTGTAATTATGCAACGGTACCTTCTCtgttcatgtatttatttatttatttgtctttTGTTTTTTTACTCCGTGTAATGTTGTTCTCAGACCACCGACACAGCTTGTTGATGCTTGTCATGTTTATATTATCGTTCTTGAATTGGAAGATGATTTGTGTGACTATGAAACAGTACTGTACACTGGAGTTTCTATTTGTGGTGTAAAAAATGGTTTCGGTGCTGTTGAAGATTGTTTGTGAACAAGGCCTACTGTACGGGACACACAAAGGAGACGTTTGTGGCTCGCGCTATTCAGCTCCCATGTTGAATAGGATCGGAAAGCTCTGCCAAAAAAACATGGAAACATGGGTGCTAAGTGGTTCACTTGTCATGGGAAGGCAGACATGGTTTGGAATGGAAGACAGAAAATGCCAATGAATCTACTTCATTCGATCTCATACCAGGATATGGTTCAGTGTTATGAAGTTATGGTGGCCGTTGATTCCATAGATAGATAGAAACCTTTTGTGATGTTCTAACAACGGTGCCAATTCATTCTACATATTTAGGGAATAGTGGCAATTGTATCGTGCAATGATATTGTTTACTTTGAAGTAAAAATGGTTTTGCTTTGACGTGAagatagggctgggcgatatggccaaaactATATTACTATAGTTTACAACGGTGTGGTGGTATTTGACTGTATTTTATGTTTCTGAATAATACAAGATCCAAGTGTGTTTTATTATTAGTGCATGAGACTGGAATGGCAACAAGTTATTTTAACAGGCTTTCTTCATTACGGTTTTATTCTTAAGGACAAAAGTGACATTGAAATAGTCCAATGTGTTGAACTGTTCAGTTATTTAGcacttaataaaaataaaaacattttttgataGATGACATGTTGATCCAGACCGGTATTCACgctatatcgcccagccctacctgAAGGTACATGTGGCTTGGAGACATTTTCCACTTAGCACAGTAAATATACACAGTAATAATCTTCCCTAGTTTTTCATTGATGGATAGGTCCACTTTATTAACACAGTCAATGTGTGATTCTCACATCTTTCTTAAAGTGATGAGTGAATATGTCATTAAAATAAATTAGCATGTGCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749954 lncRNA upstream 39720 23525518 ~ 23525867 (+) True G1528437
TU1749852 lncRNA upstream 161400 23403929 ~ 23404187 (+) True G1528353
TU1749849 lncRNA upstream 167840 23397518 ~ 23397747 (+) True G1528350
TU1749845 lncRNA upstream 171225 23394116 ~ 23394362 (+) True G1528346
TU1749827 lncRNA upstream 196293 23369081 ~ 23369294 (+) True G1528328
TU1750031 lncRNA downstream 109661 23679750 ~ 23681697 (+) True G1528508
TU1750087 lncRNA downstream 180687 23750776 ~ 23751144 (+) True G1528564
TU1750098 lncRNA downstream 197588 23767677 ~ 23768235 (+) True G1528575
TU1750059 lncRNA downstream 210254 23780343 ~ 23782312 (+) True G1528536
TU1750057 lncRNA downstream 251760 23821849 ~ 23823652 (+) True G1528534
XM_021571328.2 mRNA upstream 891 23553850 ~ 23564696 (+) False LOC110495853
XM_021571327.2 mRNA upstream 891 23553856 ~ 23564696 (+) True LOC110495853
XM_036952288.1 mRNA upstream 223046 23318743 ~ 23342541 (+) False LOC110495849
XM_021571320.2 mRNA upstream 223046 23318745 ~ 23342541 (+) False LOC110495849
XR_002469480.2 mRNA upstream 223046 23318745 ~ 23342541 (+) True LOC110495849
XM_021571330.2 mRNA downstream 342 23570431 ~ 23586847 (+) False LOC110495855
XM_021571332.2 mRNA downstream 342 23570431 ~ 23586847 (+) False LOC110495855
XM_021571333.2 mRNA downstream 342 23570431 ~ 23586847 (+) False LOC110495855
XM_021571334.2 mRNA downstream 342 23570431 ~ 23586847 (+) False LOC110495855
XM_021571331.2 mRNA downstream 343 23570432 ~ 23586847 (+) False LOC110495855
TU1749630 other upstream 404296 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 954135 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 954135 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 2808175 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3081874 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 950646 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 1434672 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1578894 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1584644 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1996382 25566471 ~ 25571346 (+) True G1530785

Expression Profile