RNA id: XM_021571332.2


Basic Information

Item Value
RNA id XM_021571332.2
length 4835
RNA type mRNA
GC content 0.55
exon number 21
gene id LOC110495855
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23537127 ~ 23586847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCGCATGGTGACGTCACACTTATCTTGAATCGTGGGTTGGTGCCACAGAAGTCAATTGCAACGTAGCTGGGTAGATTTTGGACAGCCAAGGCAGATACATAAATAATAATATTGACATTCGCCAATGCATGGAATATTGCTTGAATCATTTCTAACGGATGAAGAAGTAATGCAGTCTTAGCGAGACTGTTTGCAAAATGAAGCTGTCGCGGTCGTATGGAAAATGGATTCCTGACGGACGTATACCCTGAGCAGTACATCAGCAACATCTGGCGGCTAAGGAATCTCACTAGCTCGTGCCTCGGCAGAGAGGGTGGAGGATGCCATCCCCGGAGCAGCGGGCAgcggagatgggggaggagggggaagggtcTCTGCCGACCAGAGAGGGACCGAGCGGGCACAGCCAAGCAGACACCAGCACCAACAACCTACTGGCCTCGGTCAAAGAACAGGAGCTCCAGTTTGAGCGTCTGACCCGGGAGCTGGAGGAGGAGCGTCAGATCGTCGCCAGTCAACTTGAGAGGTGCATGCTGGGAGCTGAGTCGCCtggcgatgatgatgatgatgccagTAGCAgTGACTCATCAGAGAAGTCCTTTGCTTGGAGATCATCAGATGTGTCTGGTACAGGAGAGCACCGGGCTGCTGTAATGGACAGCTCTCACCAGTCACCCTCCCGTCTCCTCCGAGCTGATCAGGGTCACGGGTCACTCTACCTCCCTGAAGTGGAGAGGGCATCCCCGCATGACAGTGAGGGATCTGTGGCCCTTATGACGTCCTATGCAGACAGTGGCTACCAGGACAGCAGTATGAGTTACTACAGTGTGAGCAGAGAGAACGTGGTTCTGTCAGAGCCCAGACACGTGCTGTCAGGCAGCGGCCCCAGGGGAAGCCCCAGTCACGGCAGGAGCTCCCGGGCAGAGGGACAGGCCTCCGCACAGGTCTCAGCGTCAGGGCGGGTGATGAGGAGGATGGGCTCCCTCTCATCCCGGGGCCAGTCTcctgtgtgtggtgtgggggGCGCCGTGTCCCCGTCCCGGGTCTCTCTCCGCACCTCCCAGGGCGGCAGCGCCTACGGATCACCCATCCTCACCGAGCCCAAACCCCTCGCCAGCATCTTCCCCGGGACCACCATGCCCCCCTCCTCCCTGCCCGGTCCAGGCACCACCCCCTCCTTCCAGCGCGCCACCTCTCCTTACTCCCCCACCCACCAGAGGAACGGGAATGGCGACTCTCCTCTCCGGACCAGCCCCCTTCCAGGGAGCGCCAGTCATGCCACCTCACCTCAACAGGCGATGGGTAGTGTCTCTGGGCGCCTGGGGTCTACACTGTCtctggtggaggggagggggctaTCTGGCTCTCCTCTGAGGTCCTGTATGACGGCTGTGCCCCAGCACTACGGCTCCACACTGCCCCGCCAGGGAGCTCTCCCCTACATACATGACGCCTACGGGCTCTACGAGAGGACCGCCTTGCCTCTGTCACGGCCTGACAGCCTCACTGgcCTGCACAGCTCCTACGCCACTCACCACAGCCCACTGGACCAGGATATGAGGATGGCCATGTCTCCTGACTGCCACGTCACGCCTGTCTACGACGACAGAGCCTTCCAAAGCCCCCTGTATCACAGCCCCACCCACACCCACCACGGATCACACAGCGCTATCTACAGGACACTCACGGGTGCGGAGAACCTTCAGCGGACCCTCCAGAGGACCACAAGCCATTGCAGCACCTTGGCGTACCAAAGAAGCAGCTATGGGCTGAACACCGCAGGGTCATACGCAGACCCCTACAGGGTCTCCCAGCAGGGACAGGGGCCCAATGAGACCTCTTTCTCCAGGCACTCTGGTCTAGTCGACAGGGCTGCCACAAGGTCCCCCTCCATAGACAGTATACAAAAGGATCCTAGGGAGTTTGCATGGCGTGACCCCGATCTCCCTGAGGTGATCCACATGCTGCAGCATCACTTCCCCTCGGTCCAGGCCAACGCTGCAGCCTACCTCCAGCACCTGTGTTACGGAGACAACCGCATCAAAGTGGAGGTGTGTCACCTGGGAGGTATCCAGCACCTGGTGGACCTGCTGGACCACAAGGCTGTGGAGGTGCAGAAGAGTTCCTGCGGAGCCCTGAGGAACCTGGTTTATGGCAAGGCTACAGACGACAACAAGGTGGCCCTGAGGAACTCTGGTGGCGTTCCCGCTCTGCTCAGACTGCTGAGGAAAACCACCGACAACGAAGTCCGGGAGCTGGTCACTGGGGTGCTGTGGAACCTGTCGTCGTGCGACGCGGTCAAGATGACCATCATCAGGGACGCTCTGAGCACCCTGACCAACACTGTGGTCATCCCCCACTCCGGCTGGAGCAGCAGCAACTACCGAGAGGAGACCAAGCTCAagttccactcctctctcctgctgcgcAACACCACCGGCTGCCTCAGAAATCTGAGTTCAGCAGGAGAGGAGGCCAGGGGTCAGCTGAGGTGTTGCGAGGGGCTGGTGGATTCACTTCTCTATGTCCTCAAGGCCTGCGTTAGTACCTCTGACTTCGACAGCAAGATTGTGGAGAACTGTGTGTGTACTCTGAGGAACCTGTCCTACCGTCTGGAGATAGAGATGCCCTCGTCTCGCCTGCTGGGGACTCAGGAACTGGATGCCCTGCTGGGCTACGGGTCCCCCAGTAAGGACCTAGACTACCTCTGCTGGGgtaagaagaggaagaagaagaggggcTGGCTGGATGATAAGTGGGACGGCGTGGGACCCATCCCGGGGTTTGGTAAGCCTCCGCGGGGGGCAGAGATGCTGTGGCACCCGGCCGTGGTGAAGCCCTACCTCAGCCTGCTGGCCGAGAGCTCCAACCCTGCCACCCTGGAGGGCTCCGCCGGATCCCTTCAGAACCTCTCCGCTGGAAACTGGAAGTTTGCGGCCTACATCCGCGCAGCGGTGCGCAAGGAGAAGGGGCTTCCTATCCTGGTGGAGCTGCTGAGGATGGACAACGACAGGGTGGTCTGCTCTGTGGCCACCGCTCTGAGGAACATGGCCCTGGACAGCAGGAACAAGGAGCTTataggAAAGTATGCGATGCGGGACCTGGTGAACCGTCTCCCCGGAGGAAGCCCCTCCCTGCTGTCTGACGAGACGGTGGCGTCTGTCTGCTGCACGCTCCACGAAGTCACCAGCAGGAACATGGAGAACGCCAAGGCCCTGGCAGACACGGGGGGCATCGAGAAGCTGGTGGACATCAGTAAGGGCAGGGGGAAAGGGTATTCCATGAAGGTGGTGAAGGCTGCTGCTCAGGTCCTCAACACGCTGTGGCAGTACAGGGACCTGCGCACCCTCTACAAACAGGACGGATGGCACCACGGTCATTTCATCACTCCTGTGTCCactctggagagagacaggtacaggTCTCAACCAACCCTGCCTACTAGCACCTTACAGATGTCCCCCGTGCCCCGCCAATCAGGTGGTAGTGCAACCTCCTCTCCTGCCATGTTAGGAATCAGAAGACACAGCTCTAACTACCAGAGGGCTCAGTCATCTATGCAACTCGATACATATTATGGCGACAACAGTTTACATAGAAACCAGTACACAGGGTCAGAAAAGCAAACACCATATTTTATCGGGTCCTATTCCTCACCATCAAGAGAGGACTATCCTAGGTCCCAGCAGGAAGATGTCTTCTACTCCGACGAGCCGGATAGGAATACTTACAACAACTACAGAATGTACCTGTCATCGCCGCAAGGTTACGGGGAGGAGGAGCCTGGGCCTTACCAGGACGAGCCAGAGAACCTGACCTCCACAGAGCGATACAACACCTCCCAATCTAACAGACTGAAATCCAATACCAACACCACTAACTACGTGGACTTCTACTCCACCACGAGGAGGCCTTCTCAGAAGGCTAACCAGTACACTGGATCCCCTGACTCCTGGGTGTAGGGGTGGAGAAACCATGTAGAAACCATGGACCGACTCAtcagtctgtttgtgtgtgtgtgtgtgtgagatagaaagagaaatgtgagagacagaaagtgtgtgtgtgtgtgtgtgttgtgtgatatTTTAGTGGGAAAGAGCTTGTTGTTTTCTGGAGTGGTGTAATGTCAGCCAAAGAACGTGTTCTATTACAGGATAGTTTGTTCTAGTTTTTCTCAGCAGTAGGGAAGGTCCATTCGCTTTATGATGAGGTTGGTTGGATACGAACCAATCATCCGCTTGGTTGGAAATGTGGAGAATGGAGAGCGTGCTGAAGAAGTGTTGCGTAAAAAATatacattaaagggatagtttactcAAAATAGAAATTAACATGATGTTCAATATATGTTAGCTGTAGTTGATCAACTAAGACAGTTATGGATATAGTAAAGGCAGCAAATATTTCAAAACTAGCTTGGTGAATCGACTACAGCCAAAAGGAAAATAATGTGAATTTGTATTTTGAGTAAAATAAATTATTTCCATGTTGGCCAAATATATATCATGAAGTCATATCTGTGAAATGTCAAATAGTATTTgtacagagagaaaaaaatggtTACGCTGTGTTGTTACATAACATTACTGTATTCAATGTGTAGACTGTGTATGTATGATGTGGTGTCTAGTGAAttttttatgatttatttaagTGTGTGAATTTCCCCCCCAAAACGCCCTGTTGTATGTTTTCCAACACTGGCGAAGATGTGCCATGTGTCCAATGGAAATGTATGAAGAATAAAAAAGAGCGTATCATAAACACTAAAAAAAGATTCAAGAGTTGTGAAAATGAGGCTTTGTTAAATAAATCAGCTGTGGAATGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749954 lncRNA upstream 44564 23525518 ~ 23525867 (+) True G1528437
TU1749852 lncRNA upstream 166244 23403929 ~ 23404187 (+) True G1528353
TU1749849 lncRNA upstream 172684 23397518 ~ 23397747 (+) True G1528350
TU1749845 lncRNA upstream 176069 23394116 ~ 23394362 (+) True G1528346
TU1749827 lncRNA upstream 201137 23369081 ~ 23369294 (+) True G1528328
TU1750031 lncRNA downstream 92903 23679750 ~ 23681697 (+) True G1528508
TU1750087 lncRNA downstream 163929 23750776 ~ 23751144 (+) True G1528564
TU1750098 lncRNA downstream 180830 23767677 ~ 23768235 (+) True G1528575
TU1750059 lncRNA downstream 193496 23780343 ~ 23782312 (+) True G1528536
TU1750057 lncRNA downstream 235002 23821849 ~ 23823652 (+) True G1528534
XM_021571336.2 mRNA upstream 342 23565587 ~ 23570089 (+) True LOC110495857
XM_021571328.2 mRNA upstream 5735 23553850 ~ 23564696 (+) False LOC110495853
XM_021571327.2 mRNA upstream 5735 23553856 ~ 23564696 (+) True LOC110495853
XM_021571320.2 mRNA upstream 227890 23318745 ~ 23342541 (+) False LOC110495849
XM_036952294.1 mRNA downstream 764 23587611 ~ 23651133 (+) False LOC110495854
XM_036952295.1 mRNA downstream 764 23587611 ~ 23651133 (+) False LOC110495854
XM_036952296.1 mRNA downstream 9964 23596811 ~ 23651133 (+) True LOC110495854
XM_021571354.2 mRNA downstream 182701 23769548 ~ 23779632 (+) False LOC110495861
XM_036952314.1 mRNA downstream 182701 23769548 ~ 23779632 (+) False LOC110495861
TU1749630 other upstream 409140 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 958979 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 958979 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 2813019 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3086718 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 933888 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 1417914 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1562136 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1567886 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1979624 25566471 ~ 25571346 (+) True G1530785

Expression Profile