RNA id: TCONS_00047838


Basic Information

Item Value
RNA id TCONS_00047838
length 1042
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_024115
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 23336310 ~ 23347677 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGCTTTGAGGATAGAAGAGTATGAAGAGTACTTTAAGCAGAAATGTGCTGATTCCAACCATGGTTTTGCCATAGAGTACGAgGAGTTAAGATTTGTTGGAACAGCACAGGCAAATACCGCCGCCCTGGCTCTTGAAAACAAGGAGAAGAATCGTTACTTAAATGTTTTACCTTATGATGCTTCAAGAGTGAAATTACTGAAATGTGAAAACCCCTTTGATGACTACATTAATGCTAACTATGTGCCAGGCTACAATTCAAGAAAAGAGTTTATAGCTGCTCAGGGTCCATTGCCCGTCACGATAAACAAATTTTGGAGAATGATCTGGGAGAACAAAGTCTACACCATAGTGATGCTGACCAAATGCAACGAGCTGGGAAAAGTGAAATGTGAAAAGTACTGGCCATCTGAGACTGACTTTTATCATAACATCTCTGTGACAACCACCTCAGAGACAGAACTGGACGACTGGACAATTAGAGACTTCAGTATCAAAAACGTGGAAACAGAAGAAACTTGTAATGTACGCCAGTTCCACTTCACAGCGTGGCCGGATCATGGAGTTCCAGAAACCACTGAGGTCCTTATTGAGTTTAGGCACCTGGTGAGAGAACATATGAACCAGTACTCATGCACCTCTCCAACCGTGGTGCATTGCAGTGCTGGTGTGGGAAGAACAGGGACATTCATTGCCATTGACCACCTGATCTCCCAGATTGAAAGGGACAGCATGGTGGACATCTACGGAATTGTTCATGATATGCGCATGCACAGGGCTCTCATGGTGCAGACTGAGGACCAGTATGTTTACCTCTACCAGTGTGCCTATGACCTCATTCAATCAAGAACTATGTCCAACAACTTAATTTACCAGAATACAGCATCATTTGAAATCTACCAGAATGTAGATTTTAAGGAAAACAAAGATAAGATGTCCTTTACCGAAGGATCAAATTTGTGAAATGGATACAATATATATTCTTGCACAGTAATCAAATCATTTgattaatgtactgtaaaaattaaaacacaaataatgca

Function

GO:

id name namespace
GO:0043407 negative regulation of MAP kinase activity biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131120-137 Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in negative regulation of MAP kinase activity and protein dephosphorylation. Predicted to act upstream of or within dephosphorylation. Human ortholog(s) of this gene implicated in colorectal cancer. Orthologous to human PTPRJ (protein tyrosine phosphatase receptor type J).

Ensembl:

ensembl_id ENSDART00000156457

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047835 lncRNA upstream 70378 23252369 ~ 23265932 (+) False XLOC_024113
TCONS_00047836 lncRNA upstream 70378 23252821 ~ 23265932 (+) False XLOC_024113
TCONS_00049046 lncRNA upstream 70681 23263655 ~ 23265629 (+) True XLOC_024113
TCONS_00049045 lncRNA upstream 74440 23251788 ~ 23261870 (+) False XLOC_024113
TCONS_00047834 lncRNA upstream 91899 23230158 ~ 23244411 (+) True XLOC_024112
TCONS_00049047 lncRNA downstream 367688 23715365 ~ 23717669 (+) False XLOC_024122
TCONS_00049048 lncRNA downstream 368134 23715811 ~ 23717433 (+) True XLOC_024122
TCONS_00049240 lncRNA downstream 786177 24133854 ~ 24271786 (+) True XLOC_024126
TCONS_00049049 lncRNA downstream 2203784 25551461 ~ 25554635 (+) False XLOC_024142
TCONS_00049241 lncRNA downstream 2203807 25551484 ~ 25554204 (+) True XLOC_024142
TCONS_00047837 mRNA upstream 39786 23280220 ~ 23296524 (+) True XLOC_024114
TCONS_00047808 mRNA upstream 481447 22853718 ~ 22854863 (+) True XLOC_024097
TCONS_00047804 mRNA upstream 487150 22719852 ~ 22849160 (+) False XLOC_024096
TCONS_00047806 mRNA upstream 487150 22730490 ~ 22849160 (+) False XLOC_024096
TCONS_00047807 mRNA upstream 496495 22821376 ~ 22839815 (+) True XLOC_024096
TCONS_00047839 mRNA downstream 11247 23358924 ~ 23450962 (+) True XLOC_024116
TCONS_00047840 mRNA downstream 142302 23489979 ~ 23495448 (+) True XLOC_024117
TCONS_00047841 mRNA downstream 166036 23513713 ~ 23544998 (+) True XLOC_024118
TCONS_00047843 mRNA downstream 244313 23591990 ~ 23644184 (+) False XLOC_024120
TCONS_00047844 mRNA downstream 244313 23591990 ~ 23645806 (+) True XLOC_024120
TCONS_00047805 other upstream 487124 22730407 ~ 22849186 (+) False XLOC_024096
TCONS_00047798 other upstream 741529 22587296 ~ 22594781 (+) False XLOC_024094
TCONS_00047785 other upstream 1097318 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047756 other upstream 2732298 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047755 other upstream 2743713 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047842 other downstream 198902 23546579 ~ 23546696 (+) True XLOC_024119
TCONS_00047848 other downstream 703371 24051048 ~ 24052227 (+) True XLOC_024124
TCONS_00047852 other downstream 1020299 24367976 ~ 24368090 (+) True XLOC_024129
TCONS_00047853 other downstream 1251099 24598776 ~ 24608014 (+) True XLOC_024128
TCONS_00047862 other downstream 1858948 25206625 ~ 25206753 (+) True XLOC_024136