RNA id: TU1749922


Basic Information

Item Value
RNA id TU1749922
length 1747
lncRNA type read_through
GC content 0.38
exon number 2
gene id LOC110495855
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23537127 ~ 23586847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATTAAAGTCCTGTCTCAGTAACCGCTGGCACAGGAGTTTACTTTATGTGCTAGATAACATTTACCTCATGTAAAAGGAAAGTCAAAGTTTCCTCCAATACTTTAAAGTACCATTACTCTCACTCATCCTTGTTCATGGCATTGATGATTCACTGCACAGCGATGAAATAGTAAAAAGGCTACTTTTTCCACGTCGACCTCTAATACAAAAATGACTTATTCCAGACCTCCATCAACATCACTCTTCTTCTAGTTCTGCTTCACCCAACTGTTGGGGAAATAAAGAGTAGAGGGAGGCCTTGTTATGGATAATGGCCTGCCTGATTGTGCTGTGAGATGGCTTGGATTGGTCAAGGACTTTGCACTACACAAAATTTGCAAGCTAGTAGAGTGTAATTGCTTTGCTACAACTATGTAGCTAATGAAGTTCTAGCAATATTGCTCTTGGAAGTTGGAACAAGTCCATTTTGTGAAACATGTGCCATCTGCTGTAGCCTGTTAAGTTGACACATTGTGAACTAGCTGAACACTTATCTAGGCTGTGTGCTAATATCAGTCAAGAGGCAGCTAACATCGAGAGTAGAGTTTTACAGGCAATTAAAACACTCTGCAGAGAGACATTTCAAACCTGGAGCTTGGATATTATTTTTGGCCATGCAGGTTCACTTTGGGATACGGTAGAAACACATGACTGCAGTACTACAGATATTACATGTATTCCCAGATTTCATTAGTGTCGCGAGctattgctaactagcattagcacaatgactggaagtaaTTTTTTTCCCACTAGTTAGCAATTGTGCTAGTGCTGGTTAGCAATTGTGCTAGCTCtggttagcaacttccttcaaaccaaacacagagacataaaaattgtATCCACTAGTTAACTTGACTCTAGGGAAGTACATAAAGGGCcccattgccaaaatcccaaagtatccttCTGAGTCATATCATTATTTATGTTTAAAAACACTATGATTGACCAAGTTCAACCCTAATCATTTCACAATTATTCTAGCCTGCACTCATTGGTCTGGTTGCCAATGCATGTCGTTCAACAACTAGTCAGTCTACATCCAAAGAATCATTCTATTTGTAGTTTAGACTGCTATTTTGATTTGCTTTTAATAGCAGTATGAGAACTGAAGCAAAACCAATGGAATGCATTTGAGAGTCAAATGATGTTACCAGCGACATTTTGCAGGCAGATGAAAATAGTATGTCTGTGAAGGATATTACTATTCTCTCAGTTAGACCTGTGCAGGTGAGGAAATAATAAGCATTGAGAACTGAGAGTGAATTTCTGGTATCTCTAGCACAGGTGCAGAAGCTCCATGGCTGCGTTTTATTTTCACTTagccttttgaccaatcagatcagctctgaaaaatatattATGTGAATGgtcaaagaccaattagtgggaaaaaaatatcagaactgGCTTGGTGAATCGACTACAGCCAAAAGGAAAATAATGTGAATTTGTATTTTGAGTAAAATAAATTATTTCCATGTTGGCCAAATATATATCATGAAGTCATATCTGTGAAATGTCAAATAGTATTTgtacagagagaaaaaaatggtTACGCTGTGTTGTTACATAACATTACTGTATTCAATGTGTAGACTGTGTATGTATGATGTGGTGTCTAGTGAAttttttatgatttatttaagTGTGTGAATTTCCCCCCCAAAACGCCCTGTTGTATGTTTTCCAACACTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1749954 lncRNA upstream 11260 23525518 ~ 23525867 (+) True G1528437
TU1749852 lncRNA upstream 132940 23403929 ~ 23404187 (+) True G1528353
TU1749849 lncRNA upstream 139380 23397518 ~ 23397747 (+) True G1528350
TU1749845 lncRNA upstream 142765 23394116 ~ 23394362 (+) True G1528346
TU1749827 lncRNA upstream 167833 23369081 ~ 23369294 (+) True G1528328
TU1750031 lncRNA downstream 93028 23679750 ~ 23681697 (+) True G1528508
TU1750087 lncRNA downstream 164054 23750776 ~ 23751144 (+) True G1528564
TU1750098 lncRNA downstream 180955 23767677 ~ 23768235 (+) True G1528575
TU1750059 lncRNA downstream 193621 23780343 ~ 23782312 (+) True G1528536
TU1750057 lncRNA downstream 235127 23821849 ~ 23823652 (+) True G1528534
XM_036952288.1 mRNA upstream 194586 23318743 ~ 23342541 (+) False LOC110495849
XM_021571320.2 mRNA upstream 194586 23318745 ~ 23342541 (+) False LOC110495849
XR_002469480.2 mRNA upstream 194586 23318745 ~ 23342541 (+) True LOC110495849
XM_021571319.2 mRNA upstream 263195 23268875 ~ 23273932 (+) True LOC110495847
XM_021571312.2 mRNA upstream 338889 23186996 ~ 23198238 (+) True LOC110495843
XM_036952294.1 mRNA downstream 889 23587611 ~ 23651133 (+) False LOC110495854
XM_036952295.1 mRNA downstream 889 23587611 ~ 23651133 (+) False LOC110495854
XM_036952296.1 mRNA downstream 10089 23596811 ~ 23651133 (+) True LOC110495854
XM_021571354.2 mRNA downstream 182826 23769548 ~ 23779632 (+) False LOC110495861
XM_036952314.1 mRNA downstream 182826 23769548 ~ 23779632 (+) False LOC110495861
TU1749630 other upstream 375836 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 925675 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 925675 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 2779715 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3053414 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 934013 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 1418039 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1562261 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1568011 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1979749 25566471 ~ 25571346 (+) True G1530785

Expression Profile