RNA id: XM_021571339.2


Basic Information

Item Value
RNA id XM_021571339.2
length 2115
RNA type mRNA
GC content 0.52
exon number 13
gene id wdsub1
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23652437 ~ 23661732 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcagtgatcttgaGGTCAGTTAGTCGAAGCTTTAGAgctctgagttggatgaccgttcaaaacgcaTTATCCAATTCAGAGCTAGTTTTTTTcgcgagttcccagttgtcttgaacgcactgatgTTTGAAGTGGAGATTTCCGAGCTCCTAGTTGTTTGAACGCGGCAATACCCTGGTCACTGCAGCTACCCATAGACGCATATTTCTGGGGGGAAGGTCATTACGGTCAGCTGATCATATGACAGCGTGCGCATGACCAGGAAGTAAACATTGAACAGAGACACGCAAAGAGGGATTCTTCAAGACCAACTCAAATGGTGTCCCTGATCTGCACCCTGCAAGACCATCGTGACGATGTCAACTGGTGCGCCTTCTCCCCGACACTGCTGGCCACCTGTTCAGCTGACAAAACCGTACGAATTTACAACACCCAAGACTTTTCCGAAGTCCCATACTCCCCGCTCTCTGGCCACGGCTATGGCGTCCATTGTTGTTGCTTCAGCGCCTGTGGTCAGTATTTAGCCTCGTGTTCAACTGATGGTTCCACAGTTGTGTGGTCAACGGACACGGGTGAGATAGAGGCAGTGCTGGAGCATCCGGGTCGGAACCCCGTCAGGGTCTGCGCCTTCTCGCCCGACTCTTCACACCTGGTTTCGGGGGCGTCCGATGGTACTTTAGGTCTTTGGGATTTCCGTACGAAAACATTGCACAGGACTGGGGCAGTGAATGACACCACTATGGTGGCCTGCTCCTTCACCCCCTGTGGCCAGATGTTTGTCACTGGATCTACGTATGGGGACCTCAGGCTGTGGGACCTGGACATGAACCAGCTCCATGCGGAGAAGAACACTCACGACTTGGGGGTCACCTGCTGCTGCTTTGGCCCCAAGATCCTCAGTGGTAGCGGTACGGTGCACTTCCGCCTGGCCTCCTGTGGACAAGACAGCACACTGAAGATATGGACCGTCTCCAGGTCCAACGCAGGCAGCTGTAAGATGCAGCTGCTGCACACCCTGACCGGCCAGTCTGCCCCGGTGCTCTCCTGTGCTTTCTCTGCGGACGGACAGCTGCTTGTGTCTGGCTCAGTGGACAAAACAGTCACAGTGTACGATGCTagCCAGGGGACTTTGCTCTACACATTGAACCAACACGAGAGGTACGTGACGGCGTGTGCCTTCTCTCCCAGCACACCTCTGTTCGCCACGGGTTCTATGGACAAGACTGTCAATATATGGAGAGTAGAGGATGGACACAGGGGCCATGGCAAATCTTTACCTGTTGAAACTGCAACATTCTCATGCGAAGGCAGAAAGTTGCTGTGTCACTCCAGGCTTCTGGTCAGTGATTGGTCAGAGGAGGACGTGGGGGCGTGGCTGTGTGAGGAGGGGCTGCAGGCGCTGGTGGAACACTTCAAGGCAAACAACATAGATGGAGCAGAGCTCATCAGTCTGACCAAGGAGACACTGGCCTCAGAACTCAACATAGAGTCTGTGGGATTGCGCAGTAAGGTCCTGAGgaaggtggaggagctgaaggCGGGGTGTTTGTGTACCGGTGTTCCTGATGAGTACCTCTGTCCAATCACCAGGGAGTTGATGAAGGACCCTGTTATTGCTGCAGATGGGTACTCCTATGAGAGGGAAGCGATTGAGAGCTGGATCGCAACCAAGAATCGTTCCAGCCCCATGACCAACCTGCCCTTACAGACAACACTTCTGACCCCAAACCGAACCCTGAAGATGGCTATTGGACGCTGGAGGACCAGCCAGTGAGAAAGAGGGCTGCATCGGCATCTTCTACATCCATTTCAATCTGAAGGCGGGTCTATCCCTCAGTTAACTTCTGACCAAAAGTAGGCTCATAGTACATAAAGCTAAATATGATGATGTTTTCAGGTTGACCATACTGAGCTTCGATTCAACCCCTCACTGTGTCTGTTGGGATGAAACTGCTTTAGAATGTAAATATTTATAGCCGATGAGAcattctaatatatatatatatatattctcaaaCTCATGCATGTTGACCATGTTGAACTCTGCTAtttactctactctctactctgctGCTTTAGCTCCAGAACCATTtcgatgtacagtgcattcggaac

Function

GO: NA

KEGG:

id description
K24764 WDSUB1; WD repeat, SAM and U-box domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750814 lncRNA downstream 38431 23613605 ~ 23614006 (-) True G1529222
TU1750798 lncRNA downstream 61209 23591001 ~ 23591228 (-) True G1529206
TU1750738 lncRNA downstream 65604 23501264 ~ 23586833 (-) True G1529156
TU1750780 lncRNA downstream 82086 23565318 ~ 23570351 (-) True G1529193
TU1750679 lncRNA downstream 247431 23404735 ~ 23405006 (-) True G1529099
TU1750857 lncRNA upstream 879 23662611 ~ 23662833 (-) True G1529250
TU1750859 lncRNA upstream 3100 23664832 ~ 23666137 (-) True G1529252
TU1750861 lncRNA upstream 5321 23667053 ~ 23667325 (-) True G1529254
TU1750919 lncRNA upstream 104203 23765935 ~ 23766465 (-) True G1529300
TU1750921 lncRNA upstream 107314 23769046 ~ 23769345 (-) True G1529302
trnat-ugu-38 mRNA downstream 10494 23641871 ~ 23641943 (-) True trnat-ugu-38
XM_021571326.2 mRNA downstream 108806 23542411 ~ 23543631 (-) False LOC110495852
XM_021571323.2 mRNA downstream 110756 23479558 ~ 23541681 (-) False LOC110495851
XM_021571325.2 mRNA downstream 123384 23479558 ~ 23529053 (-) False LOC110495851
XM_036952289.1 mRNA downstream 173872 23459836 ~ 23478565 (-) True LOC110496920
XM_036952299.1 mRNA upstream 7422 23669154 ~ 23750026 (-) False LOC110495859
XM_036952298.1 mRNA upstream 7422 23669154 ~ 23750347 (-) False LOC110495859
XM_036952300.1 mRNA upstream 7422 23669154 ~ 23750347 (-) False LOC110495859
XM_036952301.1 mRNA upstream 7422 23669154 ~ 23750347 (-) False LOC110495859
XM_036952302.1 mRNA upstream 7422 23669154 ~ 23750347 (-) False LOC110495859
TU1750685 other downstream 108944 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 111181 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 483846 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 766604 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1389975 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 618006 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 621859 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 731643 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1488336 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1857689 25519421 ~ 25523180 (-) True G1531142

Expression Profile