RNA id: XM_036952298.1


Basic Information

Item Value
RNA id XM_036952298.1
length 8927
RNA type mRNA
GC content 0.57
exon number 36
gene id LOC110495859
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23669154 ~ 23750347 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGAAGAGTCTCCTTCAATCTGCTGTtagtaactaacacacacactcactcacaccgaGACTCAATTACTGCCCAATTCCTTTCTTTATCATCTGTTACCGGCCTCTTTCAAAACGAAATCGAAAAGAGGCTAGAAGGCTACACGAAGTATTACTTGAAACAAAATCCCGTTGGAAATAAGTATTAGTGTCGAAACTAAAGgtGTTAGAGCAGTGATGTCACAGAGCTGAAGACATTTCCTATCAATATGGAGTCTGGAGAGCGGCTGGCCTCCCCCGCGCCCCCCACCGCTCGCACCTCCTCCCCTgctgcctcctcttcctcctcctcttcctccccggCTCCCCACTCCAAGAGCAGTCTGGCCCCCAGCCATGCAGCCTCACTGGGATCTACCCTCAGCACCTCTGGTCGTTTGTATGGGGTGATGAGCGACCAGCAGCCCTACACGTTGTCAAGTGCCTTCCCCCTGGTCAGCCACCCAGCCTTCGGCCTGTACACCACCAGCTCAGGACGCCCAGAGTTTGGAGGCCTGGGGTCGTTGGGGTCCCTGGGTTCTCTGGGGTCCTTGGGGATGTCTGCTGCCCTGGCCGCACACCCCCAGCTGGGAGCTCTGACAGaatGGTGGCGAGCAGCAGAGGCCCACAGTAGGGGGGCAGCAGCCTTCCTCCCGCCGTTCCTGGGCCTCCCCACAATGTTCACCCCCCACATCCAGCAGAACCACAGCCCCCTGCAAGCCCCCTCCAGGACCCCCAGCAAAAACGGACAGACCCCCAAAGGGGTGAACGGGGCAGTGAACGGAAGTGGGGTCTCCTCCCCAACCATGCAGGGGTCTTACTCCATGAACGCGTCCCCATCCCTGGGTGCCTCTCAGGCTGTTAAGGGCCCCAACTCCAAGGCCAGGGGCCCCAGGAGCAGCCCTCACAGCCACACAGCAGAGTTACAGCTGGAGAAAGTACCCTGCAAGCCTAAAGACAAGAAGCCCAGTAAAAAGCCAGCAGAGGTCGCTGGGGTCAGTGACAGCGAATCAGGCTCTTCCTCGGACAGCTCCAGCGACGGAGCCATCAGCAGCGACCTGGAGGACCTCGGAGGGGAAGAGGACGACGACGATGATGACgacgatgatgatgaggatgaggaagaggagggaaagagCAAGGCGTGGAACTCTGAGAAGGAGAAGGCGAGGCGGACGAAGAAAAAAATGAAGatCGGGACACTAAGCTCGGGCATGAAGGAGGCCCAAGACAATAGGAACAGCCTGCCCCACAGCCTACACTCCGACCCCCCCACCCTGGTCCCCTCACAGCACTCCCCCTCTACCCTGTCCCAGagctcccccctgtctctccagACCTCCCGGCCCAGGGAGGAGGGTCTCCAGCAGCACCTCAGTGTCATCCAGTCCACGGGCCTAGCAGCCAGCTCCAAGCCCCTGGCCCTCCTCACCCAACCCCGCAGGGAAACCTCCCCATCAACCGTCTCTGCCTCTCCAATCCCCCTCATCACCTCCCCCAAAGGACGCACCACAGCCTCCCCCAAGCCGCCCAAGCTTCTGCCCTCCTCGCCGCAGCACCCGCCCCTGTCCCTCTGCTCTTCCTCCAAGCCCCTGTCGGTGCCCTCCCTGGCCCGCTCCGTACCCCTGTCCTCCTCGCCTcaatccttccctctcctcacgtCGCCCATGGCCAACTCCCAGCAGCCCAAGCCTCTGAAGACACCAGGCAGTGGGAAGGCTAGTAAGAGGAAGTTGCTGGAGGAATCACTCTCTCAGATCAACGAATTCAGGCTCAAACAGTCTTTACTCTCGCAAGGCCAGACGTTCCCGGCGGCGCAGCCCAAGAAGCAGCAGGGTCACAAAACCTCTAGGAAGGCTGCTGGGGTGACGTCATCCTCCTTGCCGCCCCCCAAGCTGTCCTCCTTGGAGAGTCCGTGTGGCGGTGGCAGAAGCACAAAGTTGCCCCctgctcccctcccccctcccccccagaacAACCACTCCAACCTCTTCCTGTCCAGCGCTCTTCTGGGCCTGGCTGCCCACCCCAACGGAGTCATCCAAAGCACCACGGCTCAGGACGCGCCGCTAGCCCTTATCACCAAGCCCCGCAAAGACTCCAACAAGGACCTCTCTCGGGCAGGGGCGTCCCTCTCACTGCCCGTCAACCTCAGCACCGGCGGAAGGGTCCACTCGGCCTCCTCTCAGGGCCCCCCGGCGAGGCCCGCTACCTCACCCTCACCGGCCACGGCCCGGGGCCCCAGGAAGATCAAGGCCCCCAAGGCCCCTAACCTCCAGGTTCAGGCACATGCCCTGGCCCCCATGGCAGCCTGGAAGGGCCTCTCTCAGAGTCACCTGGTGCAGTCTCTGGTGGACCTGTTCAGAGGGGCCGAGGCCGGCCTCCCAGGTCTCCCCGGTCTCCCTAGCAGCAAGGACTCGGATGACTCTGTTGAGGatgacgacgacgacgacgatgATGATCTGGatgatttggaggatgatgaggaggactCGGATGACAGCTTGTCAGATTCTGACAGTAACTCGGACAGCGACAAGGACATCTCCGGTGGCAAACTGAAGGACCCGAAGCTGAAGCTGCCATCGTCAGGCTCCGTCTCCAAGAGGGAGAAGACCCCACTCAAGCTAACCAAAGGCCACGCCTCCTTACTGAGCAGCACAACCAATCACACAGCCGCCAGCTGCTCCCCACTCAACCTGCAGGTCATCAAGACGCCCAACATCGTCACCAGCTCCAGTGCCTTGGCCTATCAcagctctccttcctcctcctactCCCTGGTCACGCCCCCAGgcGCAGGGAAAAGAAAGAGGGTGATGGATGAGCAGGAGTTGAGGATACCTCTAGAGTTGGGCTGGCAGAGAGAAACGCGGATCAAGAGCGTGTCTGGGAAGATGCAAGGCGACGTGGCGTACTACGCGCCATGCGGGAAGAAGTTGAGGCAGTACCCCGATGTGGTGAAGTATCTATCCAGAAATGGAATAAGTGGCATCACACGCGATAATTTTAGCTTCAGTGCAAAGATAATGGTTGGTGACTTCTATGAAGCCAGAGAAGGACCCCAGGGTCTGCAGTGGAGCCTGCTGAAGGACGAGGACGTCATCCCTCATATCCTGGCCATGGAGGGCCGGCGGGGACGGCCCCCCAACTCAGAGCGCCAGCGCGGGGCCGAGGGGGGAAAGGGCTCCCGGAGAAGGAAGGGCCGGCCGCCCAACGTGGGAGAGGGTCTGGGGTTGGGGGCCGAGGTGCCTAGCCCCAGCGAGGCCAAACTCTTACGCAAACTGGAGGCCCAAGAGATAGCCAGGCAGGCGGCCCATATGAAGATGATGAGGAAGCTAGAGAAGCAGGCCATGGCCAGGGCAGCCAAAGAGGCCAGGAAGCAACaagTCTCTCTTTCAGCCATCATGGCAGCCGAGGAAAGGAGGAAGCAGAAGGAGCAAATGAAGCTCATCAAGCAGCAGGAGAAGATCAAGCGTATTCAGCAGATCAGGTTGGAGAAGGAGATGAGGGCACAGCAGATCCTGGAGGCTAAAcggagaaagaaagaagaggtTGCGAATGCCAAAATTATGGAGGCAGAGAAACGAATAAAGGAGAAAGAAATGCGAAGACAGCATGCAGTCATTTTAAAGCACCAGGAGTTGGAGAGGCATAGACTAGATATGGTATGGgagagggagaggagacggcAACACGGGATGCTCATGAAGGCGGTGGAGGCTCGCAAAAAAGCAGAGGAGCGCGAGCGCTTGCGGCAGGAAAAGAGGGATGAGAAACGCCTGAACAAGGAGCGGAAATTGGAGCTGAGGAGGCTGGAACTGGAGATTGCCAGGGAGCTGAAGAAGCCAAATGAAGACATGTGTCTGGCCGATCATAAGCCTCTTCCAGAGTTTTCCAGAATCCCTGGCCTGATCTTGCCGGGGGGTGCGGTGTCTGACTGCCTGATGCTGATGCAGTTCCTACGCGGTTTTGGGAAGGTGCTGGGCTTCGATGTGGGGGTGGACGTACCCACCCTGGGcatgctgcaggagggcctgctCAACGTGGGAGACAGCATGGGACACGTCCAGGACCTGCTGGTCAGACTGCTCTCCCTGGCCGTGTGTGACCCTGGACTGCCCCCTGGACACAAGacCAAGACCATGCTAGGGGACCATCTGACCAATGTGGGCATCAACCGGGACAATGTGTCGGAGGTGCTGCAGATGTACATGGGGGCCTATTGCGGGCAGACTGACCTGGCTGAGCTGGCCCTCAGCCTGAAGACCAAGGCCTTCCAGGCTCACACCCCCGCCCAGAAGGCCTCCATACTAGGCTTCCTGGCCAATGAGCTGGCCTGCAGCAAGAGTGTCGTCAGCGAGATCGACAAGAACCTTGATCACATGACCAACATGAGGAAGGACAAGTGGCTGATCGAGGGCAAACTCAAAAAGTTGAGGACCATCCATGCCAAGCGGACCGGGAAGAGAGATGCCAGCATGGGAGGGGAGGAGGCCCAGCCCCTGGGTACGCCCTCCTCTGGCCTCAAACGCAAGAGAAAGGCCGGAGCAGAAAGCGACGACGACGAGGATGAAGACGAAGACAGCGATGACCTGGCCGATGAAGatgacgaggaagaggaggaggagatgaagaagGGGAAGAAAGTGGAAACGTGTGACGAGGACGATGGGGACCAATCAACTAGTGTGGAGGAGCtggagaaacagatagagaagCTAGCCAAGCAACAGCACCAGGTGAGGCGGAAGCTGTTTGAGGCGTCCCACTCCCTGCGCTCCATGATGTACGGCCAGGACCGGTACCGCCGGCGCTACTGGGTTCTGCCCCACTGCGGAGGGGTCTTCATCGAGGCCATGGAGAGCGGAGAAGCTGCGGGGgagctggagaaagagagggagaggaggagggcggcAGCAGGGGAGGTGCACATCAAGGAGGAGCCgcaggaggaggaggtgcagAAGAAGAAACCTGGGGGCGTCggcggggaggagaggagcgtcTACACCTCCGTGCGGtcagaggaggggaaggaggagaagaaaggtTCTCCCAATCTTTTCCTCTTGCATCCGGCCTCTCTCTCCAAACTGACCACACTCCTCGACGTCGCTAAGGACGTTGCCAAGGAAATCCGCGAAGCCAAGGCAGACCTCCGCCCCAAATACAGCCCAACACCACCGTCTGTCACCACGACAACAAAAATAACACCACCATCCGATCCCGCCAACAACGTCTCTCTGCCCGCTAAACCTACAAGCCCCTGTGCGTCGACGGTGCCCAACCTGCCGTGCGAGGAGGCCAAACCCGGCTACCCCACCTCCACCTCGTCCCCCTCCTCGTTCTCCTCCCTCCTAAGCCCCACACCCCAGCTTTTCAGCCCTATAAAGACCTccaccctagcccctaaccctccACAGCTCCAGTACCTCCCCAGCGACCAGCTCCTCAGGGTCCTGACAGAGAGGAGCGGTCACTGGTTCAGCCTGCTCCCCCGCTCCCCCTGTGACGACACCTCCCtcaccacctctccctcccctgggCCCGGCCCTCTCCAGTCCTCCCCGCTGCCTTCCTCCAGCCTCACCCGGCCCAGGTCTCCCCCGGCTTCCCCCGCCCTGCCTCTCACCCCCTCGGCAGCGTCGGCCTCAGCCAGCCCCCACCACCCAGCTGGCTTCATCAACTACCCTCTGTCAGCCCTGCAGGTTAAGACTGGAGGGTCGTTGCTGAGTCTCTCAGCGTTCTGCGGTGGCTGGCCCAGTGGAATGCTGAGCCCCAGCCAGCTGCCCTTCTGCAGCAGCCCCCTGCCAGGCCACTCAGGCCTCAGCTCCGTGGAGGGCAGTGCCAACGCGCCGCCCAGCGTCTCCAGCAAGAGCGGGTCGCCCGTTCCTCCCGGCGAGAAGCTCTCGTCCACGGTGCCCTCTCCCGCCATGATGGAGGTGCCCAAGCACTCGGACCACCCCACACCACGGCCCATCCCAGaggagaTGCTGTCAGGCTGGTGGCGGGTGTCAGACATTGAGGAGCTGCGCTCCCTGGTGGGGTCCCTCCACAGCCGGGGAACCAGAGAGAAGGGCCTGCACCGACAGATGCACAAATACATGGAGCTCATCCCACAGGTCTGCACCAAGCACCGAGACGCGGCCATGATAGAGCTGTGTGAGCTGGAGGAGAGCCAGGTGAGTGTGGAGTCAGTGCGTGGGTGGTGTGTGGAGGAGCAGGCCATGGAGATGGACATCGCTGTGCTGCAGCAggtggaggagctggagaggAAGGTCACCACCGCCAGCCTGCAGGTcaagGGCTGGATGTACCCCGAGCCCCAATCAGAGAGGGAGGACCTGGTCTACCACGAGCACAAGCCCCTCCCCAAACACCAACCAGCGGCGGCCGGCGCTGGCGACAAAGACCAACCGGAGGACAAGGCGGACCACAAGGCGTGCGGCGTGGTGCGTCACGCGGACAACCCTCTGGACATAGCGGTGACGCGGCTGGCGGACCTGGAGAGGAACATCGAGAGAAGGTACCTGAGGAGCCCCTTAGGTACCACCATTCAGATCAGGCTGGATAATGTGGGGGCTATCGGTACCGTCACTGTCCCAGCTCCCTCCAGTAGTGCTGACAGGGAAGGGGGCGAGGAGGAGGTGGCCCATGGGATGAAGGTGTGGAGGAAGGCCCTGGGCGACGTCCGCAGTGCCGCCCAGCTGGCCATGTGTCTCCAGCAGCTCCAGAAGTCCATCGCCTGGGAGAGGTCCATCATGAAAGTGTACTGTCAGATCTGCAGGAAGGGTGACAACGAGGACCTGCTCCTGCTGTGTGACGGCTGTGACAAAGGCTGCCACACGTACTGTCACAAACCCAAGATCACCACCATCCCCGAGGGGGACTGGTACTGCCCCGCCTGCATATCCAAGgCGAGCGGCCCGTCTCCCAAGAACAAGAAGCCGCCCAGCAAACCGGTGGCGGGTGGAGGCGGGAAGAAACCCACCGCGGCCGAGGCCAAGCGGAACGGGAAGCAGGCCGGCAACAGTAACGGTAACGTGGAGGTGTCAGAGGACGACTCGGCGAGCGCCAGCGGCACCCCGAAGAAAGGAGGAGGAGCGAAAGAGCCCCCCAgcaggaagaggaaaggagaggagagcccCGCCCCGTCCCAGGCCCCGCCCACAccccagtcacccagtcaggagagccctgtggtgtgtgtgaagaGAGCCAAGACAGCCAGAGACAACAACAGAGACCTTGGTTTGTGCAGGGTGCTCCTGGCTGAGTTGGAGCGTCACCAGGATGCCTGGCCCTTCCTCAACCCCGTCAACACCAAGGGGATCCCTGGCTACAGGAAGGTCATCAAGAAGCCCATGGACTTCGCCACCGTCAGAGAGAAGCTCGTCAGCAGCCAGTATCAGAATCTGGAGACTTTCATTATTGACGTCAACCTGGTATTTGATAACTGTGAAAAGTTTAATGAAGACAATTCAGACATCGGGCGAGCGGGACACAACATGAGGAAGTTCTTTGATAAGAGATGGACAGAGCTTCTCAATGAAATAAACTAATCCATCAATTTTGGGTGTTGTTTTACCGATCATCATCACTGTCTCGAACCAGACCTCCAGTAACATTATTTGACATTTCATAGCGGAGGCACCACGTTTTGGGAATGACAAGATGATGATGCTGGTCCGTCTGTACCTTTGGGACGAACCCGGGGCAGTTAAAGTGAAATGTCAACAGACAGACTTGTAACGCTGGTGTTGCTACAGTACAACAGGGATCCAAACACCCAAAGAGTCCCACACAATGTCAACCGGGTGTCTTAGTGCAATACCATTTCCTGTTCAAGATCATTGCACTGAATCCTCATCCTTCTCAACCACCCGAAATGCATCTGCGGTAGAATACTTTCCACTACTTGTAAATAgacgttttatttttatttaatcgtATTATAGTGaatgtatttaattttttaataATTATTTATGaatcaataaataaaataaaaaaaaggtccACATCATTTTCTATGAAAAGGAAGAATCAGCTCAACTGCTTTGAATCGAAAGGAatgtctgtctttgtgtttgaCTTTTTTTTCTTTCCCAAATATGAAACAAAGCCAAGAAAAAGAATTACTGTTTACACTGTTCTATGCTTTTGGGCATCAGAGGACTGTAATCATTACGTTAAAACTGTACAACTGCATTTAATTACAAAAATTGCAGAAAAACAGTCAGACAATGGTGatacatgtgtatatactgtttaTTAATGTCAATATTCAAGTCTTGTTTGGAACGGAATTGTTTAAAATATCAGATATTGTTTATGCCTTAGAATGATTGTagcattctattctattttagtgaaagtgataaaaaaaaaaacataaatattgtttgtacaatatatacatatccTCTGCAAACACTGTGGTATCCTTAATCTTGGTAGTGCCTACCCTTCCAACAGGGGCGTAGGGGATATAATTTTTTCGTTTTTCCATTTTTACGATGAcattatttttatatataatttCAATCCAACATGGCCTCCAAAGTCTGACAGTGACACAGTAATATTTCCTCTCCATACAGaaagagaaaaacaaacaaacaacgtcTAAGTATTTGTTTagtctttttttccccccatgaaACATTTCCCCACATCTGCCTTGCCACAGTACAGAGGACGTAAGGCCATTTGTAACCACTGTGTTTGAATCTTGCTGTGTGTCGTGGCCTAATGGAGGCAGCTAGAATTTTTTGTACCCAAGTCAGAGTACTTGAAGTTACTTTATTTAAGATATTGTGGAAAAATAACATCATTCTTTTTGTAGGAGCTTTATTTTTCACTAGTGTGTGGCACGGACCTATTAAAGGATGTTTTTCAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750861 lncRNA downstream 1829 23667053 ~ 23667325 (-) True G1529254
TU1750859 lncRNA downstream 3017 23664832 ~ 23666137 (-) True G1529252
TU1750857 lncRNA downstream 6321 23662611 ~ 23662833 (-) True G1529250
TU1750814 lncRNA downstream 55148 23613605 ~ 23614006 (-) True G1529222
TU1750798 lncRNA downstream 77926 23591001 ~ 23591228 (-) True G1529206
TU1750919 lncRNA upstream 15588 23765935 ~ 23766465 (-) True G1529300
TU1750921 lncRNA upstream 18699 23769046 ~ 23769345 (-) True G1529302
TU1750937 lncRNA upstream 71725 23822072 ~ 23823449 (-) True LOC110497101
TU1750964 lncRNA upstream 112568 23862915 ~ 23863506 (-) True G1529342
TU1750983 lncRNA upstream 147253 23897600 ~ 23897819 (-) True G1529361
XM_021571339.2 mRNA downstream 7422 23652437 ~ 23661732 (-) True wdsub1
XM_021571340.2 mRNA downstream 7423 23652437 ~ 23661731 (-) False wdsub1
XM_021571337.2 mRNA downstream 7424 23652437 ~ 23661730 (-) False wdsub1
XM_036952297.1 mRNA downstream 8165 23652437 ~ 23660989 (-) False wdsub1
XM_021571338.2 mRNA downstream 8951 23652437 ~ 23660203 (-) False wdsub1
XM_021571353.2 mRNA upstream 30469 23780816 ~ 23821326 (-) True LOC110495860
XM_036952315.1 mRNA upstream 71481 23821828 ~ 23846147 (-) False LOC110497101
XM_036952316.1 mRNA upstream 71481 23821828 ~ 23846147 (-) False LOC110497101
XM_036952319.1 mRNA upstream 96064 23846411 ~ 23860407 (-) False LOC110495862
XM_021571356.2 mRNA upstream 96067 23846414 ~ 23860683 (-) False LOC110495862
TU1750685 other downstream 125661 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 127898 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 500563 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 783321 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1406692 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 529391 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 533244 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 643028 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1399721 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1769074 25519421 ~ 25523180 (-) True G1531142