RNA id: XM_036952313.1


Basic Information

Item Value
RNA id XM_036952313.1
length 3241
RNA type mRNA
GC content 0.56
exon number 11
gene id LOC110495861
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23769548 ~ 23779632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttagctagcaagctgttTTTCTTCATCCATTTTTAACTTCGACGCCGTGCCAACAACAAGTTTGGGAGGCTAGCTTGCATGTTTCTTCCATGGGTAttgctaacgttaggtagctagttgACAAGCTCCTTCGACATCTGCCAATCAGTGATGGATTCCAAGCCTCGCCGGCTGCCCTTTACGGTGTCCAGCACCACATCTTATTCTtcatcctcttccccctcctccctggGTTCCCTGGGATCCAGCAGGCTCTATGGAAGATCCAGTGTCCTGAACAGTGATCGCTTCACCAGGGCCACACCCCTTAAACCTGACCTCGACCACCAGAGCTCTCGGTTCCTCAGCTCGACCAGGGACTACAGTAGTTCTGACAGCCGCCACTCCAGCTGGAAATCCCCTCTGACCACCTCCTCGGTCTCCTACGATCGCTCCTGGGCCGAGTCCTCACTGAGCAGCCGCAGCAAACCGACTGATTCAGAGACAAGACTGGGGACGTACTCAGGACTTCTCAGCAACCCAACTGATGATGGGGATACCAAACGGGCCAAACTGTCTTATATCAACAGAGCTGCATATACAACAAGCCCCTCTGTGACTGGCTCCTCCTACTCCAGCAGTGTCCTCAACAGAGACTCAGATTTGTCGTCGTGGAAGTCGTACCGGCCTCTGTCCAGgtcgtcgtcctcctcttcttcttcctcctcctcttcctcctcagagcCCCTGTGGTCCAGAAGGGAGCTGGAGAAGAGGAGCGAGGCGAGGAGTCTGTCCAGTGTGGCTGATAACACCAGCTATAGGAGCTCCGGACTCACCTCATCCCTTTACCGGCCAGACCGTGTGACCTCCACCTATGCCCAGGGGGCCCGGCCCAAGGAgaccctctactcctcctcttcctctagcaGGGAGAGCAGCTCCCTCAGCCGCCACCTCTCTTCCACCTACCAGCGCTCCCCACTGGCCCGggactccaccacctccacctcccggGCTACCGGCCGCTCCCTGACCACCCTCACCGCCTCCACCCTCCGCACCGCCAAGGAGCCCACTGAGAGCCGAGAGCCCGCTCTAGGAGTCTCCGTTACCGCTCGTCCCTCTTGGTACACAACCCCCTCAGCAAGGCGGGAGGCCCGGGACTCCAGCCCCCCTCCCTCCACGCCAACCTCCACCCCCAGGACAACCCCGGAGGGTGGCGAGGCATCCGATGGACGTCGCTCCACCCGCCGcctcctctcccgcctcttctcTCGGCGCTCCAGCCAGGACTCCAGCGGCTCCAGCTCTGGCTCCGCCTCCCGCTCCTTCGACTCGACCGAGGACAGCCCTGTCTGTGGAGGAGAAGGCCCCAGCCACGCACCCGTGGCTACCAGCGAGGAGAGCGTCCGACCCGTAAGCGTGGAGCCCGTTCCCAGAGGCTCTGACGCGGCCCAGGCCTTTGCCTTCCTGAGGCGTCGCAGACAGGGCCTGTCCCCGGTCCAGGAGGGCCAGACCCAGCGTGCCCCGGAGCCCCAGCCTGGCCTGGAGGCCTGGAGAGGGGGCAGCACCAGTGGTGGTGTTGGAAGTAGTACTTCAGGTTCCTCCTGGCTGTCGTCTTCCATCCGGACCCGCtgcactcctctcttctcccgcCGTAGAAGAGAAGGCCGGGACGAAAGCGCTCGCCTGGCGTCCGGTGCCGATGAGGATTACCGTGGTACCCAGTTCCCCCTCAGGAGTAGAGACACCCCCGAGGCCAAGGCGGacgaagacgaggaggaggaggaggatgatgaaggaGCGGTGGCTGCGGCGGCGGCAGCCTCGGGGGCGATGGGTGCTAGTGCCGCCCTACAGGAGGAGTTGAGAGACATGGCGGGGAGTAGTCAGCGTTTGGCGAGGTTCATGAGCAGCCCACTGTTCCGTGTCCACGACAACGTCATGATCGCCGTGGACATGACGGGCACTGCCAGGAGCCAACCGGAGGGCCAGGAGAAACCCACCTCCTCCAGAGACCCTGAGAGACTGAGGAAGATCCAGGAGAGccTGCTCTTGGAGGACTCTGACGAGGAGGAAGGGGACCTGTGTCGTATTTGCCAAATGGGTTTGGagtctccctccaaccctctgaTCGAGCCCTGCCGCTGCACAGGCAGTCTGCAGTATGTTCACCAGGACTGCATCAAGAAGTGGCTGCGTTCCAAAATCAGCTCTGGCACGAATCTGGATGCCATCACCACGTGTGAGCTGTGCAAAGAAAAGCTGCACCTGAACATTGAGAACTTTGACATCAACGAGCTACACAGGACACATGAGAAGTCTGAGTACGAGTTCATCAGCTGTGGCCTTTACCTAGTGGTGTTGCTACACCTGTGTGAGCAGAGGTTCTCTGATGTGCTCGGAGCTGCCAACGACGCCGGGtTTTTCAACCTGGCGAGGACCCTTCATGAACACATGGACAATCTTGAAAGCTCTTATGGGGAgtcagatgaagaggaggtggTTGATACCCGGCCGTCAATCGATTTCTGTGACCTCGATGAAGACCTGGAAGAGGAGTACAATTgatcggggggggggggcgacaagAGTTGAACGAGTTACCTTCCAGTAGCAACCCATTCTGTTGCTCTGTTTCACCTCGTGATTTTACTGAGTGCAATGGCTTGTGGGATTTTTGAAGCCAATGCCAAGTAGACGGGAAGTCACTCCTGACGTAGAGGTAATGATGTCATAGATATGCAGACTGACGTTGAAGTGAACCGAGGTGAGGAAATGCTTTATATCCCCCTATTGTTAATTTGGCCTTTCCTTTGGGTCTCCAGATTTGAGTGCGCTTTACTCCGTTAAAATGCAAGCTATCCTTTTGAACTGTTAAACCACGAGTGCTTTAAATGTTACTGCTCTAAAAAAAGCAGATCTGTCCACAGTGGTGAGATAttgtgtataaaaaaaaaaagagatggaATCCGAAACACCACTGGTTCGTTAGTTTAGCGGGTTGGGAGAAGGGGTGTGTTTAGGGGAGAATCTATCAAGAAGTGGCAAATTATCCCCTTTACTGTTTTTCTTTTCCTATGTGAATTTTCCTTTTTTGAAGTTTTTCAAAAAATTGTGTGAAAGAAAGTGACAACTTTACTTTTCACAGCTGAATAATTAAGTTTGTTCTGTTTTAGTCTGTAGTATGAAAATGCTATTTTGCTTGCCCCTAAAACTTGTTTTCATTTAATTAATGCAATAAAGTTTTGAATGTAGA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10662 MARCH7, AXOT; E3 ubiquitin-protein ligase MARCH7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750098 lncRNA upstream 1843 23767677 ~ 23768235 (+) True G1528575
TU1750087 lncRNA upstream 18934 23750776 ~ 23751144 (+) True G1528564
TU1750031 lncRNA upstream 88381 23679750 ~ 23681697 (+) True G1528508
TU1749922 lncRNA upstream 183356 23537127 ~ 23586722 (+) True LOC110495855
TU1749954 lncRNA upstream 244211 23525518 ~ 23525867 (+) True G1528437
TU1750059 lncRNA downstream 711 23780343 ~ 23782312 (+) True G1528536
TU1750057 lncRNA downstream 42217 23821849 ~ 23823652 (+) True G1528534
TU1750123 lncRNA downstream 44195 23823827 ~ 23824948 (+) False G1528598
TU1750121 lncRNA downstream 44439 23824071 ~ 23824368 (+) False G1528598
TU1750122 lncRNA downstream 44439 23824071 ~ 23824948 (+) True G1528598
XM_036952294.1 mRNA upstream 118945 23587611 ~ 23651133 (+) False LOC110495854
XM_036952295.1 mRNA upstream 118945 23587611 ~ 23651133 (+) False LOC110495854
XM_036952296.1 mRNA upstream 118945 23596811 ~ 23651133 (+) True LOC110495854
XM_021571334.2 mRNA upstream 183231 23570431 ~ 23586847 (+) False LOC110495855
XM_036952331.1 mRNA downstream 132347 23911979 ~ 23918645 (+) True LOC110495865
XM_021571368.2 mRNA downstream 214390 23994022 ~ 23997602 (+) True LOC110495871
XM_036952333.1 mRNA downstream 299101 24078733 ~ 24100642 (+) False LOC110497102
XM_036952334.1 mRNA downstream 299101 24078733 ~ 24100642 (+) False LOC110497102
XM_036952335.1 mRNA downstream 299101 24078733 ~ 24100642 (+) False LOC110497102
TU1749630 other upstream 608787 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 1158626 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 1158626 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 3012666 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3286365 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 741103 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 1225129 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1369351 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1375101 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1786839 25566471 ~ 25571346 (+) True G1530785

Expression Profile