RNA id: XM_036952315.1


Basic Information

Item Value
RNA id XM_036952315.1
length 6119
RNA type mRNA
GC content 0.52
exon number 28
gene id LOC110497101
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23821828 ~ 23846147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCCTTTTTATTCAGCAACTTGTCGTCGAAATGAGAGTATATTTATCACGCTGTACAGAATCTCCAGGAGTGCTCTTGTTAATCTTTGCAATAGTCTTTATGAATAGCTGCGACTGTGTGATTGAAGACGATGTGGTGTTGGAGAAAAAAGATCTTTCCGAACTCTACAACAAGGGTCTGTTCATCATGGAGAGTACCCAGCTGAAGCGctgcatctcctcctcctcctctaacctggtcctggagagctgtGAGAGGCCCACCCGCCGTATGCTGTGGAAGTGGGTGTCTCGCCACCGCCTCTTCAATCTGGGTAGCAGCCTCTGTCTGGGCCTGAACATCAGCGACTCCACCCAGCCCCTGGGCACCTTCGAGTGTGACTCACCCCTCCGGACCCTGTGGTGGAGGTGCAATGGGAATACGTTGTACGGGGCGTCCCAGCTGAAGCTGTCCGTGGCTGGACGCCTGGTGGTGGTCAAGAGGGCCAGTTATCATCAGTGGCGGAGGTACTCTACACCGGGGGAGGGGCCATGTGCCTATCCTTATGAGGAGATCCACACACTGTTGGGTAATGCCCACGGCATGCCTTGTGCCCTGCCGTTCAAATACAACAACAAGTGGTACTCGGAGTGCACGGCAGAGGGGCGCGAGGACCACCATCGCTGGTGTGCCACCACCAGTCGATACGACCAGGATGAGAAATGGGGCTTCTGTCCCAGTCAAGAGTTGAGCTGCGATACGTTCTGGGACTCGAACCAGGAGAGCCGTGCGTGTTACCAGTTCAACCTGTACACCATCCTGACGTGGAGCCAGGCCCACGCCTCCTGCCTGGCCCAGGGAGGAAGTCTACTCAGCATCACTGACCTCACTGAACAGATGTACATCAGAGAGCGGTTGGCTGACGTGGGGGTGATGGTGTGGATCGGACTGAACCACCTGAGTGAGAGAACAGGGTGGCAGTGGTCTGATGGAGCTCCTCTGGCCTTGGTTAACTTCACCTCAGGCCTATCATCCAGCCCTCTGCAGGACAacaggcagtgtggagtgtataACTCAGCGTCGGGGGGGCACCAGTGGCAGAGTCTGTCCTGTGAGTCTGCTCTACCCTACATCTGTAAGAAGACCCCCAATGACACCAGGAGAGCTGAGCCTCTAGATAACTGGCAGTACTACCGCACGGTGTGTTCCGAGGGCTGGCTGGCCCACAACCGTTACTGCTACAAAGCCCTGGCAGAGGCTGAGGCAGGGAGCTGGGAGGACTCCTCCACTGCCTGTAACTCCATAGGGGCCAACCTCACCAGCCTACACTCGCTATCTGATGTAGAACTGTTGCTGGGCCTGCTGGCTAACGTCTCAGGGTCTGGCTCAGAAGTGTGGATCGGCCTGATAAAGAAGCTATCGTCCTCAGCTGTGGAGTGGTCAGACGGCTCCCCAGTCGACCTCACTCTCTGGCACATGCACCATCCTACCCATAGCAACAGTCAGCTCTGTGCCAAGACTGACCTAACGGAGGGGAACTGGCTGTTGGCACCATGTGATGAGAAGCTCCCTGCAGTGTGTAGGAGAGCAGGACTTCTGTCCCTACTCCCCACTGAAGCATGGGACGAGGGCTGTCCTgagGACTGGAAGCGGAAGGGCCGCTCTTGCTACATGGTGACGAGCCACGAGCAGAGCTATGAAGACGCTGTCAAGGGTTACTACTGCAAGGCTCCTCTGGTCACAGTGGAAAACAGGTTTGAGCAGGCCTTTCTGAACAGCCTGGTGAGTGAGATGGGGGCCAACGGTAGCGTCTTTTACTGGACGGCCCTACAGGACCAGGGTAACCAAGGAGAGTACAGCTGGCTGGGGGGACACAACGGATCCACCCTACCCTTGCTCTATACAAACTGGAACAGGCATCAGCCAGtcaGTGCAGGTGGCTGTGTGGCTATGACAGGCGGCCAGGCCTTGGGTCACTGGGAAGTGAAGGACTGCAAATCCCAGAAGGCCTTCTCAGTGTGTAAACAGAGCGTCAGTGGTTACCAGGAGGTCCTGTTCCCTACAGTCCATATTGACGCTTACGCCCCCTGTCCTCCAGGCTGGGAATCACACTCCGGCCTGCTCCACTGTTACAAGGCGTTCCACAGCGAGAAGGTCCTGATGAAGCGGTCGTGGGAAGACGCTGACTTCTTCTGCCAGGCTCTAGGAGCTCAGCTGGCCAGCTTCCACCACTACAAGGATCAGGTCTTCGTCAAAGGACTCCTCCAGTCCATGTTTGATGGAACAGAGGGTCGTTGGTTCTGGGTGGGCTTGAATAAGAGAGACCCCCAGTCAGCAGGAGCTTGGGAGTGGTCTGACGGCACCCCCGTGGTGTCCTCCTTCGTAGAGGATAAGAACGAGGAGGATGACCGACATAGCTGTGCCGTGTACAGCGACCTGACCAACGCCCTCCTGCCACAGCCCTGCGACACCAAGCACGAGTGGATCTGCAAGGTTCCCAGAGGTATGGAGCTGAACAAACCCTACTGGTATAGCGACCAGAACGAGCCCTGGGTGTTCTACAGAGGAGCAGAGTATCTGCTGGCCAAGCAGCCTTTTCCCTGGGAGGGAGTTAACCTGGCCTGTATGATGATGGGCGCCCACTTGCTGTCTGTCCACTCTAAAGAGGAGCTCCGATTCATCAGAGAGCGCATGGGGAAgctctctctgggGTCGACTGACTGGTGGATAGGGCTGTCCACAGACCTCGTGAGGGAAGAGTTCAGttGGAGTGATAAGTCCGCTGTGGATTATCAGAATTGGGCAGAAGGAAGCTCCCATGATGCCCCAGTGAAACAGAAACAGTGTGTGACCATGTCCTCTATCTCAGGTCAGTGGTCGGCGGGTGAGTGTGGCGGTCTCCATGCTCACGTATGTAAGCGCCGGACCGTGTCCGTGGTGGAGATTCCCAGAGAGCCTCACTACATCGGAGGCTGTCCAGAGAGATGGCTCTACTTCGGACACAAGTGTCTCCTGCTGCACCTCCCCAACAGTTCTGAGGAGGGGAAGAGCTGGAGAGACGCCCAGTCTATCTGCTCCTCTTTCCAAGGCACGCTGGTCGCCATCCAAGACGAGATCGAGCAAGCGTACATCACCATGCTGCTCCAGGGCAGTACAGTGGGCGTTTGGATTGGTCTACGGGATGAGGACACCATGAAATGGACCAATGGGAAACCTGTCAGCTACACCAACTGGTCCCCTGTAGAACCCAAGAACCCTCTGACgGATGAGTGGCTGAGCGGGCCCCTGGGCGGGGACGATCCTCTGTGCACGGTGCTCTCCAACAACCACAACTTCCACCTGACAGGGAAGTGGTTCGACGAGAGGTGCACAGAAAGTGGATACGGCTTTGTCTGTCAGAGACCCCAAGACACAACTAAACCCCCATCCCACTCCTACCTTCACCCTCTCCCTGACAATATTGAGTACAAGAACCACAGATACAGGGTTGCCCGTGGCAACATGAGCTGGTACGAGGCGCTGAATATGTGCTTAGAGTCTGAGTCTGAGCTGGTGAGCGTTACCGACCCCTTCCACCAGGCTTTCCTTACTGTCCTTGTCAATAGATTGGCATTCCCCCACTGGATTGGACTGTATAGTCAAGACGATGGGATCAACTACCAGTGGTCTGATGGCAGTGACACGGTCTTCACCCACTGGGTTGCGGCCGATGATGATGATTTCATCCTGGGGGACTGTGTGTACATGGACGTCACCGGGGGCTGGAGGAGGGCCGACTGTGAGATGCCGCTCCAGGGAGCCCTGTGCCATGTCCCGCCACCTAAGAGTAACGCGTTCACCACCTACGAGGTTGTGTGTCCATCGACGTGGGTGAGGTTTGGCGCCAGCTGCTACAGCTTTGAGCCCGTGGTCCAGAGACTGACCCTGGAGGAGGCCAGAGAGCACTGCAAACACAAAGCGAACACGTCAGAGGTCCTGACCATACAGACAGAGACGGAAAACAGGTTTGTCCTGGAGCAGCTGTGGTCGTATGGCTTCCCACATCAAGCCGTCTGGCTGGGGATGTTCTTCAACACTGACACGGGCTCCATGGCATGGCTCGATGGTTCTCCTGTGGACTACTCCAACTGGAACTTCAGGGCCCCAGACCCCAGCCTGTTGACAGCAGACACCTGTGTGTCCACCAGGGTGTCTGATGGGATGTGGCTCCTCTCTCAGTGCACTGACAGACTGGGCTTTGTCTGCAAAACTAACTCAGATATGATCCCGGAGGTAGAAGTGGCGCCACTAAATGGGTTGCACCATGGTATCATCCCAGCCGCAGTCCTGGTGGCCATGCTGATCTTCGCCGTGCTGGTGGCGGCGCTCTGGTTCGTCTACAAGAGGAACGTGACGCGCTTCCGCAGACTGCCGTCCCTGGGAAACGCGTACTACAGACATACTAGTTCCCAGGCCACAGACTCCGATGGAAATGTTCTCATCGCAGATCTGGAAGCTCACTCTGGAGAATAGGGCTGTGTCCGAAATGGCCCTCGTTCCCCTATATAGGTGCacggctttggtcaaaagtagtgcactctatagggaatacggtgccttTTTCAGATGCGCTATAGGACTTATTGGAGACAGCAAAATGGTGGTGTTCTCGAAAGTTGGGTAAAGCATGGGAATGGGCCGAACTCTCTGTATGACTGTGAACAGTGGTATGTCTCTGTGGAGTCTGAAATGGACCACAGCAAGGGAACGTAGAGAATGTCAGAGCCCAATTAGCTTTATCCACTTGAATCCCACAGGAGGCGGCTGAGGGGAGAACTGCTCGTAATAATGGCAGGAAatgagcaaatggaatggcatctgACATCTGGAAACCACGCGTTTGATTTATTTGATATCATTCAACTCCGGTCATTACAAaggagcccgttctccccaattcagatgccaccaacctcctgtgctttaTACAAGTAGTTGATTAATTAGGAACCAATCGTGTGGCTGAGAGTGAGGAAGTGCATCTTCATGTGAAGTAAGTTTTGTCTACAAAGGATTAGTGCCGTTATCCCAAGTACTTTGAAAGGTGCTGTCATTCTAATGTATCCGTTTGAAAGTCGATAGATATTCTTTGCACTGTAAACTTGCTGTTTCGTTATTATGGTACAATGCCAACTGCTCCCACTAACGCTGGTGCCCACTGTATTTGTGTGTACAAGTCCTTCACACAGTGAAGACTTAGTTTTCTGTAATGCCGTGTACAGGACCCAAAACTATTTTATTCTTGTTTAAGATAACAATGGCCGCGATTCAGTTGTTCTTTACAGCAAAGACAAAGTCATACTTTTGCAATACATTCTGAAGTCATCttctatgtattttttttttttacatgtatgaacAGAAATAAGACCCCAAATCAATTTCAAGTTGTGTTTTTGAAATCAAAAAGTGTCATTAAAGTACGGTGTTTCTTTGTCAGCACTTTATTGCACAAAACTCCATTAATGCAATACGGAAAGATGATGTTTTAGTTTAgaggttttttttgtttgtttatgtgcatTCCTGTTGCGTATTTtcctacacacagaacacacgcTCGCACCCTCGCAGTATTTCTTAAGTGGCTTATAAGTACATACATGATATTCGtaagaggaagggaagaaaaaGTTAAGAGAAAAATGCAggcatttatttatgttttattatttatcGTTACGAGAAAAAGATTTGTCCGTCACTTCCATTTTGTTCATTTGGTCCACACATCTGTCAAAATGTAGGAGCAAAGAAACTTTTGTTGACGAAACAAAAATGATGTTAACAAAGTGCTTTTATGTAAATGGTAGCTCTTTGAGAATTAATCCAGTATTCTAAGTAGATTTATGTGTGGGTTGTTTATTATGAGGTACAGTCTTTGCCGTGTTACCTGTTGTAGTTGTTCTATATTGGGTACACAGAGTTATTAGATATGAAATATGTTGATGTAGGTTTTTCTGTTGTGTGGAAAGAAATACATGAAAGACGATAACACGGATGCTTGAAAATGTTTACTgtcttttgttattttgtattgatAATGTTCGTAACACATGCTATGTGCCTTCAGTGTAAATAAAATGAAGCTGTATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750921 lncRNA downstream 52483 23769046 ~ 23769345 (-) True G1529302
TU1750919 lncRNA downstream 55363 23765935 ~ 23766465 (-) True G1529300
TU1750861 lncRNA downstream 154503 23667053 ~ 23667325 (-) True G1529254
TU1750859 lncRNA downstream 155691 23664832 ~ 23666137 (-) True G1529252
TU1750857 lncRNA downstream 158995 23662611 ~ 23662833 (-) True G1529250
TU1750964 lncRNA upstream 16768 23862915 ~ 23863506 (-) True G1529342
TU1750983 lncRNA upstream 51453 23897600 ~ 23897819 (-) True G1529361
TU1750984 lncRNA upstream 53180 23899327 ~ 23899601 (-) True G1529362
TU1750993 lncRNA upstream 63781 23909928 ~ 23910145 (-) True G1529370
TU1750996 lncRNA upstream 65183 23911330 ~ 23911696 (-) True G1529372
XM_021571353.2 mRNA downstream 502 23780816 ~ 23821326 (-) True LOC110495860
XM_036952308.1 mRNA downstream 71481 23669154 ~ 23750347 (-) False LOC110495859
XM_036952319.1 mRNA upstream 264 23846411 ~ 23860407 (-) False LOC110495862
XM_021571356.2 mRNA upstream 267 23846414 ~ 23860683 (-) False LOC110495862
XM_021571357.2 mRNA upstream 267 23846414 ~ 23860683 (-) False LOC110495862
XM_036952317.1 mRNA upstream 267 23846414 ~ 23866508 (-) False LOC110495862
XM_036952318.1 mRNA upstream 267 23846414 ~ 23866508 (-) True LOC110495862
TU1750685 other downstream 278335 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 280572 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 653237 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 935995 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1559366 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 433591 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 437444 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 547228 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1303921 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1673274 25519421 ~ 25523180 (-) True G1531142

Expression Profile