RNA id: XM_036952318.1


Basic Information

Item Value
RNA id XM_036952318.1
length 3455
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC110495862
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23846411 ~ 23866508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagGCAGCGTCATGCTTCATAAAGCTGTCTGTTACTGTAGGTTTATAGTTACTCCTGCCCAGGGCTGCAGTTGGAACTGGACGTTTTGAGGGCCGGCGGCAGTGGCGGCGTCTCCCTGATTCCTCTCCCCTCATTTTTCAGGCGGTGACAAGGACACAGCGCCCCTTTGACAGGACAGCATGGTACCAGAGGAGGCCCCTGTAGTAACCGCGAGGACCAATGGGGACTGCTGTACTTCTACTCCTGATTCTTCGGCATTGGATCAACAACGTGGAGGGAACATGTTCGGTTGGCAGTGCAGTGACTTGTGACGAGTGTCTCCAGCTTGGTTCCCACTGTGCATGGTGCACACAAGAGAATTTCACCGACTCGTTTTTAATCAGTGAGCGATGTGACACGCCGTACCTCCTCCAAGAGAGAGGCTGTCCCCAGGACCAGGTGGAATTCCCAGTGACCACTTCCGAGGTCCTCCGGGACCAGCCACTCGGGAAGAAGACAGGAAATACCAACAGCACAGAGATATCACCACAGAAGATGGCCCTCAAACTCCGAACTGGCAGTGAGGTGACCTTCCAGGTCAGTGTGCAGCAGACAGAGGACTACCCTGTAGACATCTACTACCTGATGGACCTCTCGGCCTCCATGATTGACGACCTGGAGATGATTAAAGACTTGGGCTCCACCCTGTCCAAGGAGATGGCAAAGCTCACCAGTAAATTCAGACTTGGATTTGGGTCCTTCGTTGAGAAACCAGTCCTCCCGTTCATTAAGATCACTCCTGGAGAGCTGGAGAACCCTTGTAGGAGTGTGGATGAGAGCTGTCTGCCAACGTTTGGATACAAACACGTCCTACCCCTCACCAGCAGCACAGAGAAGTTCAACAATATCATCACCAACCAGCATGTGTCTGCCAACATCGACCTGCCGGAGTGTGGCTTCGATGCCATTATGCAGGCTGCTGTCTGTGGGGACAAGATAGGCTGGAGGAACGACTCCATGCGTCTGCTGGTGTTTGTGAGCGACGCCGACTCTCACTTTGGGATGGACAGCAAGATGTCAGGCATCGTCGTCCCTAACGACGGGGAGTGCCATCTGGACAGCAACAATGAATACTCTATGGCTGCCCATCTGGAATACCCAACTCTGGGACAGCTGATGGATAAACTGGTGGACAATAATATCCTGCTTATATTCGCTGTGACTGAAAATCAGAAACACAACTACGAGAACTATGCAAGTTTCATACCTGGCGCCACGGTGGGGGTTCTGGAGTCAGATTCAAGGAACATCCTGGAACTGATTGTGACGGCGTATAAAGAGCTGCGGTCTGAGATAGAGCTGGAGGTGCTAGGAGACACGGAGGATCTACAGATCTCCTTCACAGCGATCTGTCAGGATGGGACGGTACTACCTGGACAGAAACGATGCTCCAACGTCAAAGCTGGAGACACGGTCTCCTTCAATGTGACTGTAGAACTCTCTGAGTGTCTCGACGGTCCCCAGCGTTTCCTCATCAAACCGGTGGGCTTTCAGGACCCCCTGGAGATAGACCTGGAGTCCCTGTGCTCCTGTGTCTGTCAGCAGACCCCCGAGCCCAACAGCAGTCACTGCAGCCTGGGCCGGGGATCTCTGGAGTGTGGCTCCTGCCTGTGTGATCCCGGGTACATGGGCTCCAAGTGTGAGTGTACGGAGGAGAGCGTCCAGAGCAGTAACTGCAAGGCCAGTGGCGCTTCGGAGTCCTGTAGCGGGCAAGGGGAGTGTTACTGCGGCCAGTGTGTGTGTCACCCGTCTAGTTTCGGACGCGTCTACGGGGCCTACTGCGAGTGTGACGACTTCTCGTGTGTGAGGTTCCGAGGGTTACTCTGTGGAGgtcacgGGGACTGTGACTGCGGCGAGTGTGTGTGTCATAGCGGCTGGATAGGGGAGTACTGTaactgcagcagcagcagggacACGTGTGTGTCGGAGGACGGAGCGCTGTGCAGCGGACGGGGGAAGTGTGTGTGcgggaagtgtgtgtgttccatgccCGGAGCCTCTGGAGACACCTGTGAAAAGTGCCCTACCTGTGGAGACTCCTGTAGCTCTGCTAGaACCTGTGTGGAGTGTCATCTACAAGCAGAAGACGAGGCCACAGAGGAGTGTGTCCAAAGGTGCAGCGTCCCTCACGTCTTCGTCAACAATTCCACAGAATACGATGAGAGCCGGTCCACGCTGTGTACCCTAAAGAGTGAGAACAACTGCTTCATCTCTTTCAGTGTGGTGGCTGGAGACGCAGGGAGCACTGTGTATAATCTAAAGATGTACGacTGTCCTGAGCCCCCCAACATAGCTATGATAGTACTGGgggtctctctgtccatcctcaCCATCGGCCTCATCCTGCTGGTGGTGTGGAAGCTGTTGATCTCAGTCCACGACCGCAATGAGGTCGCCAAGTTTGAGGCCGAGAGGGCAAAGGCTAGATGGCAGTCGGGTACAAACCCTCTGTTTAGAAGCTCGACATCAACGTTTAAAAATGTAACTTATAAAAGCGCAGGGGGACCGAAAGTTGATATTCATTCAATGGATGGCTACTGATGATGACATCAGCTTGTATATGTAAAATATTTACCAGCAGTTGAGTGCACTGGAAGTCCGTTAGGGCAGTTGTGGAGATGTTTATGTTGtatagtatctatctatctatctatctatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgcgtgcgtgcatgtgcatgcaagtgtgtgtgtgtatgtgtgtggtgtaagGACAAATTGTAATCACCACAATGTGCAACATTGTATCACTCCATAAGGTCTGGATCTTCTTCAGGGATGCTATCTCATATCAGCAGACAGACAATGGAATGTCTAGCTATGAATCATCTCTACATTAAATTACTTTGATTTTGCTGCTCTTGAAGTTGTCTTTGGTACAAACGCTCTGCTGAACTGAACACTGGATTGCAATGCAGGAAATGCAAAACTTgtggtgtatttgaggtttaaaaagttttctgaagtttgtaatttccactttgaaatgtcagattTGTCCATTAAttgtaatccacataataatttacatttctGGTTGCTGCAGGGTTATTTTCTtgatgtagcaaactggctcaaattaagaacCTACATCTTTACTTTTTTCATAGACTTTGGGTTGGGACATAGATAGCCTAAAACTAAGAATAAGCTGAGTAGGCTTGATACTACTGCAATAATGtttcatgtttttttgtgttatgAATGTTTTGCTTTGGGTTTTGAGTCGAGGCTGAGCCTTGAATTGTGTAATCTTGATTGGAATCATTTTGAGAAGAATAGTTGATTAACTTTAATTAACTTTATGGCGCAAAAATAAAGTTGAACTTTTGAGTTGTTGCCACA

Function

GO: NA

KEGG:

id description
K06589 ITGB6; integrin beta 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750937 lncRNA downstream 22965 23822072 ~ 23823449 (-) True LOC110497101
TU1750921 lncRNA downstream 77069 23769046 ~ 23769345 (-) True G1529302
TU1750919 lncRNA downstream 79949 23765935 ~ 23766465 (-) True G1529300
TU1750861 lncRNA downstream 179089 23667053 ~ 23667325 (-) True G1529254
TU1750859 lncRNA downstream 180277 23664832 ~ 23666137 (-) True G1529252
TU1750983 lncRNA upstream 31092 23897600 ~ 23897819 (-) True G1529361
TU1750984 lncRNA upstream 32819 23899327 ~ 23899601 (-) True G1529362
TU1750993 lncRNA upstream 43420 23909928 ~ 23910145 (-) True G1529370
TU1750996 lncRNA upstream 44822 23911330 ~ 23911696 (-) True G1529372
TU1750936 lncRNA upstream 45344 23911852 ~ 23912788 (-) True G1529317
XM_036952315.1 mRNA downstream 267 23821828 ~ 23846147 (-) False LOC110497101
XM_036952316.1 mRNA downstream 267 23821828 ~ 23846147 (-) False LOC110497101
XM_021571353.2 mRNA downstream 25088 23780816 ~ 23821326 (-) True LOC110495860
XM_036952311.1 mRNA downstream 96067 23669154 ~ 23750347 (-) False LOC110495859
XM_036952329.1 mRNA upstream 7161 23873669 ~ 23890415 (-) False LOC110495863
XM_036952322.1 mRNA upstream 7161 23873669 ~ 23890418 (-) False LOC110495863
XM_036952325.1 mRNA upstream 7161 23873669 ~ 23890418 (-) False LOC110495863
XM_036952327.1 mRNA upstream 7161 23873669 ~ 23890418 (-) False LOC110495863
XM_036952326.1 mRNA upstream 7161 23873669 ~ 23890419 (-) False LOC110495863
TU1750685 other downstream 302921 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 305158 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 677823 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 960581 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1583952 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 413230 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 417083 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 526867 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1283560 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1652913 25519421 ~ 25523180 (-) True G1531142

Expression Profile