RNA id: XM_036952326.1


Basic Information

Item Value
RNA id XM_036952326.1
length 1835
RNA type mRNA
GC content 0.51
exon number 13
gene id LOC110495863
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 23873669 ~ 23890422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTGATTGTCAAACATTTAAACGCGTTTTGTGTTCAGAATATTAATACTAACCGTACTCAATAAGAAGGTTATTTGATTATATCTTGAAACTCACCTCTATTGTATGCGCAATGGTTTGGTCTGTAGTAGGTGGGACTCAGGAGTGGTCAGCAGGACGTCGTAGATCAATGAACTGAACTGAGTTTTGATGCCTGGGTTGGacgacactttggtgggattaaacCATATAACCTACGCAGTGTAGCCTATGTTAGGTAGCCTACGGATGTGACAACGCGACAAGGACATTTGAATCAGGATCGAAAACGGAGTCTATTTCAAACCCGGTCGATATGCGGATTTTTTCCAAATAAACCCACTGGCTTTAAATAAACGGGTCTGCATGTAGCTGAATTTTTGTGGGGAAACAAGCTTTTTATCTCGGAATAACTGGAATAGGCTATCCAGGATGATCTTTGCAAACACTGCCAACCCGTTGAAGAGCACATATCGGAAGCAGTCGTACCCCATGGCTCCAGCCAGCCCCAGCACGGTGAGcaccagcagcaacagcagcaccaCAGGATGGGACCAGCTCAGCAAAACGAACCTGTACATCCGCGGCCTGCCTCCAGCAACCACTGACCTGGACCTGGTCAAGCTCTGCCAGCCATACGGCAAGATCGTGTCGGCAAAGGCCATCCTCGATAAAACAACGAACAAATGTAAAGggTATGGATTTGTGGACTTTGACAGCCCTGCAGCAGCCCAGAAGACGGTCCATGCCCTAAAGACCAGTGGGATACAAGCCCAGATGGCTAAGCAGCAACAGGAGCAGGACCCCACCAACCTGTACATCTCCAACCTGCCTGTGTCTGTAGACGAGCAGGAGCTGGAGGGGCTGCTGAGGCCTTTTGGACAGGTCATCTCCACCCGCGTCCTCAGAGACTACAGCGGGGCCAGCAGAGGGGTCGGCTTCGCCAGGATGGAGTCCAAGGAGATGTGTAACTCAGCCATAGCCCACTTCAATGGGAAGTTTATCAAGACGGCGCCTGGAACTATGGctCCCTCTGAGCCCCTGCTGTGTAAGTTTGCCGATGGTCAGAGGAAGAGGCACAGCCACAGTCCATACATCCCCAGCGGTCGCACTTGGCCCCGAGAGGGAGAGCTCAGACTTGGCGGGATGACTCTCACCTACGACCCCACCTCAGCTGCTATGCAGAACGGCTATTATGCCTCTCCCTACACCCTAACGGCCAATAGGATGATGGCTCAGCAAGCCATGTCTCCCTACATGTCTCCTGTCACCTCCTACCAGGTACAGAATCCTTCCTGGATGGCCCACCAGCCTTACATCATGCAACACCCAcaggCTGTAATGTCGCCCTCTGTGGACCACACCATGACAATGCAGCCCACCGCCGTCATGACACAGCAGATGGGCCATCTCTCATTGGGCAGCAGTGGAGCGCAGTATATTTCAGCCAACGCTGCAGTCCAGGCAGCCTATATTCCTCAGTACGCCCACATGCAGCAGACAGCCGAAAATGGTTCACAGCAACAAGTGGATTCGTCCAATAATTCGTCTCCCTACAGTCAACAGAGCAAGTAACGATAAGGTGACTTCTGTGAGCAGTAATGGATGCTGTGGGCGCTGACTCATGATGTCACAGTCACAGCCTCTCCTGATCGGACCAGACCAGACTTCAGTAAGAACTCTTTTGCACAGCTTCAACCAAACAACTGTGTATGATGGAACCAACAGCAATGATACCATGGTGTGTAAAACGAAGACAGAGGTGTAAAAAATGGACAAAACCAACAattatcccccccccctccttcaaaACAGg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750964 lncRNA downstream 10163 23862915 ~ 23863506 (-) True G1529342
TU1750937 lncRNA downstream 50220 23822072 ~ 23823449 (-) True LOC110497101
TU1750921 lncRNA downstream 104324 23769046 ~ 23769345 (-) True G1529302
TU1750919 lncRNA downstream 107204 23765935 ~ 23766465 (-) True G1529300
TU1750861 lncRNA downstream 206344 23667053 ~ 23667325 (-) True G1529254
TU1750983 lncRNA upstream 7181 23897600 ~ 23897819 (-) True G1529361
TU1750984 lncRNA upstream 8908 23899327 ~ 23899601 (-) True G1529362
TU1750993 lncRNA upstream 19509 23909928 ~ 23910145 (-) True G1529370
TU1750996 lncRNA upstream 20911 23911330 ~ 23911696 (-) True G1529372
TU1750936 lncRNA upstream 21433 23911852 ~ 23912788 (-) True G1529317
XM_036952317.1 mRNA downstream 7161 23846414 ~ 23866508 (-) False LOC110495862
XM_036952318.1 mRNA downstream 7161 23846414 ~ 23866508 (-) True LOC110495862
XM_021571356.2 mRNA downstream 12986 23846414 ~ 23860683 (-) False LOC110495862
XM_021571357.2 mRNA downstream 12986 23846414 ~ 23860683 (-) False LOC110495862
XM_036952319.1 mRNA downstream 13262 23846411 ~ 23860407 (-) False LOC110495862
XM_021571363.2 mRNA upstream 28309 23918728 ~ 23948039 (-) False LOC110495867
XM_021571361.2 mRNA upstream 28309 23918728 ~ 23948050 (-) False LOC110495867
XM_021571364.2 mRNA upstream 28309 23918728 ~ 23948071 (-) True LOC110495867
XM_021571365.2 mRNA upstream 58305 23948724 ~ 23970857 (-) False LOC110495869
XR_002469483.2 mRNA upstream 58305 23948724 ~ 23971314 (-) False LOC110495869
TU1750685 other downstream 330176 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 332413 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 705078 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 987836 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 1611207 22262056 ~ 22262462 (-) True G1527230
TU1751209 other upstream 389319 24279738 ~ 24280446 (-) False LOC110497104
TU1751211 other upstream 393172 24283591 ~ 24283994 (-) True LOC110497104
TU1751283 other upstream 502956 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 1259649 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1629002 25519421 ~ 25523180 (-) True G1531142

Expression Profile