RNA id: XM_036952334.1


Basic Information

Item Value
RNA id XM_036952334.1
length 7402
RNA type mRNA
GC content 0.54
exon number 35
gene id LOC110497102
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24078733 ~ 24100642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTCGGCTTCCGTTCAACTTGTGGTCACAACGACAAAGCGAAAATAAAAAGGATAGcaattagctagccagctaatccCTTGCATGACTCAGTCGCTGTACATTTCACAGGTTTATGAAAAAATGGATATGGTCAGGGGACCGGGCTGAATTTAGAAACGGATTTGGAGTTTTTCAAGTTGAATTTCACCAGTCTATGCATCAGCATTGCCATGGATAAATCTCAGTGATGGAGTCCCAGAGGAAAAGCTCTGATGAGGAGGACAGTTCAGGGGAGCGAGGGTCGCTCCACACCTGGAAGGGCTACTCCTATAGTGTCACCCCAGAGAGAGTGCTCCTGTCCAGGCCTGTGCTGCAGGCTGCCCTGGGGACACGCCATGGGGTTCTACTGGTGGAGGGCGGGCAGGTGTACAGCTTCGGTGAGTTCCCATGGAAACAGAGCCAGGTGTCAGAGGTGGGCCCCCTGAAGCCTGTCCTAGAGAGCGCTCTCAGTGGCCAGCGCGTGGTCGCCGTGGCAGCGGGCAGTTTCCATAGCGGGGCGCTTACTGAGGACGGCGGGGTCCACATGTGGGGGGAGAACTCGTTCGGCCAGTGTGGCCTGTCCAGCCTCACTGTAGTCCCCAATCCTACTCCAGTGGCTGTCATGGACCCCGACACCAGCCCCCCCCATACCATCCGGGTCCTGGAGCTGGCCTGCGGGGAGCAGcactcccttgctctctctgccCAGCACGAGGTGTGGGCCTGGGGCAGCGGCTGCCAGCTGGGCCTGGTCACCACCATCTTCCCCGTTTGGAAGCCCCAAAAGGTGGAGCACCTGGTGGGCAGATACGTCCTTCAGGTGGCCTGTGGGGCCTTCCACAGCCTTGCCTTGGTGCGTTGCCTACCACCTCAGGAGTCCCGGCGGCCCCTGCCAGACAAGTGTGGCCAGTGCAACCAGCTGCTCTACACCATGACGGACAAGGAGGACCACGTCATTATCTCAGATAGTCATTACTGCCCCCTAGGGGTGGAGTTGCTGGCTGAAGGAGAGACCAGGCTGGGGCCTGGAAGGTCCCCTCCACTAGGGCTTCTGAGCTCCCCTTCAgagcccctcctctcctctcatgcctCTGACTCAGCGCCAGGTCCCCATCCCTCCATAACAGAACATACAGACtatgagagggggaggacagtggCACAGAATGGGGAAGTCTTGACCACCACAGATGCTGACATCTCTGCTTCTGGGACAGACTCTGATCGAGCTGTTGGAGGTGTGGGGGGTGCAAGGTCTCAGAACTCCCCCTACCCTAATGATCAGGCAGTGAAAGAATATCTCAAGAAACTGTCTGACACCTCTTTGGCTGAGGAGACTGCCAAGATGACCATAGCAGGAGCAAGTTTTCAGCCCCCAGCAGATAGCCTTGAcctcctgacctctgacctcatcccCGGGGTCATGCCAGTGACCACCAGCTCTGCCCTCAACAACCTGGTCTCATCCTGTGCCTCCGCCGTGGGCGAGAGAGTGGTCTCCACCTACGAGGCTCTGTCCCTGAAGAAGATgattaactactactaccctgGGGTTGGGGGTGTAGCAGGAGTACCCGGTGGGTTTCCAGGGGGACCCGCGGAGGTGCGGGTGCGTCTGGAGGAGTCCATGCAGGGGAAGAAGAGCTGCAGCACGGGGGATATCCGTGAGGAAGAAGCCGAGGGCCTGAGTCGACGTCTCTCTCTGCCTGGACTCCTCTCTCAGGGTAGATACGCTGTTCGTCTCTTATCCTCCTTCTCTGCTCATCGCCTCTTATCCTTATCTTCCTCCTATACTCTGATGTTGTCCCCCAGGTTGCTGCGGAGGGCCAGCCGGCCCAGGGTGCGAGCGGTGCCCCTCACCCCTGTGGGAGGGCTCCCAGAGGCGGGGGAGCTGCTCCCCTCCCTGCAGACCGAGGTGTGGAGCTGGGGGCGGGGCGAGGAGGGCCAGCTAGGCCACGGGGACAACCTCCCCAGGCTGCAGCCACTGTGCATCAAGTGCCTGAGCAGTAAGGAGGTGGTGCTTGTGGCTGCTGGGGCACATCACTCCCTGGCCCTGACTGCACAGTCCCAGgtCTTCTCCTGGGGTAGTAACAGCTCTGGCCAGCTGGGACACATGGCATCTCCTACTACTATCCCTCGCCTTGCCAAGCTGTCTGAGGGGATCCGTGTCTGGGACGTGGGTGCGGGGGCGCAGCACACCCTCCTCCTGGCCGATGGGGACTGTTATCAGCCCATCCTTTACTATAGCGGACAGCAGGTCAGAGAGGGGGCGCAGGACGCAACCCAGGACCAGACGGAggggtacagctacacccagcaACCAGTGCTGCTCCCCTTCTGCATGAACTTGGGCTACGTGAGCGGTGTGTTTGCGGGGGGCCAGAGCTGCGTGGCGCTAGCCGACCGCAACGTCATGGGTTTCATCGCCAGCCTCCACGAGCTGGCTGCTGCTGAGAGGAAGTTCTACTGCAAGCTGAGCTCTGTGAAGAACCACATCCTGCGCCCCTTGTTGGACCTGGAGTCGTTGAGTACAGCTCTAGGCCCGGCGTCCACAGTGCTGCTACGGAGCCTGGCGAGGTGTTATAGCCGCCTGTGTCACCTGACTGGCCAGCACTCTGCCTCCCTCACCGCCAACCTTCGCCGCCGCCGGGAGTTTAAAAGCCTGGTTATGCTGGAGCATGCCAGCATCTTCCTGGACACGTACAATGAGTACTGCTGCTCTGTGGGTAACTTCCTGGTGATGGGGGGCTTCCAGGCTCTGGCCAAGCCCTCGCTAGAATTCTTTGGGAAGTGTCCAGAGCTGTTGCAGCGGCTGGCAGAGTCCAGCGAGGAGAACATTCCTCTGAGTGACCTGTTGGTGACGCTCTTCTACCTGCCCATGAGACACCTTCACGAGTATGGCAGGCTGCTGCTCAAACTGGGAACCTGCTTCGAGGTGAGCTCAGTGGACTACCAGAAGCTGCAGGACGGCTGCTCTAAGTTTGAGGCCCTggctcttcatctgaagaggaggaggaaagaggcagAGTACACATACCACTTCTGGAAGAGCTTCCCTGGCAAGATGACGGATTCCCTGCGTAAGCCCCGCCGGAGGCTGATCTGTGAGAGCAGTAACAAGGCCCTGACGCTACAGAACTCTGGAAGGTTCTCTGTCAACTGGTTCATCCTCTTCAACGATGCACTCGTCCACGCTCAGGGAGTGGTTCCCTATAAAAGCCTTTTCTCCACCCACCACGTCTTCCCATTGGCCACACTGTGGGTCGAGCCCATCCCGGAGGAGAACACTGGCCTGCATGGACTGAAGTTGATCTCACCTGAGGAGACCTTCACCCTGTTGGCCTGTTCTTCCATGGAGAAGGCCAAGTGGCTTCGCTCAATCAACCAGGCGGTGGACCAGGCCATGACTGGGGCGGGGCAGtcaggctcaggggcagggcAGAGGGCGGAGCCTCCCATCTCCCGGACCGCCTCCTACACCTTCTACAAGGACAGCCGTCTGAAGGAGGCCACCTACGAGGGTCGCTGGCTGGCCGGCAAGCCCAATGGGAGGGGTATGGTGAAGTGGCTTGATGGGAGAATTTACACGGGGACGTTCAAGAACGGACTGGAGGATGGTTTTGGAGATTACGTTATGCCCAGCAAGACGTTGAACCTGAACGACCACTATCAAGGCCACTGGAAAGAAGGGAAGATGCACGGCATCGGAACGTACAAGTATGCTACAGGTGAGTTGTACGAGGGCTCGTTCCAGGACAACATGCGCCACGGTCACGGGATGCTGCGCAGCGGCACGCTgaactcctcctcccccagcGTCTTCATCGGCCAATGGGTGCACGACAAGAAGACGGGCTACGGCGTCTTTGATGACATCATCAGAGGAGAGAAGTACATGGGCATGTGGCAGGATGACCAGCGGCAGGGCACGGGCGTCATAGTAACCCAGTTTGGCCTGTACTACGAGGGAgccttcaacaacaacaagatgcaGGGCACAGGGGTCCTGCTGTCTGAGGACAACACCACATATGAAGGAGAGTTCTCGGAGGACTGGACTCTCAACGGAAAGGGTGTGCTGACTATGCCTAATGGGGACTACTTTGAGGGCTCCTTCACCGGGGAGTGGGGCTCCGGCCTGAAGGTCACCGGATCCTTCTTCAAACCCAACCTCTACGACTCAGACGGGGACAAGGGTCGCGCTGTTAAGCTGGGGCGCCTGGCAGTGCCTCcggaggagaagtggagggtagtgtttgaggagtgttgGATGAGGCTGGGCTGTGAGGCCCCTGGCCAGGGAGAGAACCAGCGAGCCTGGGAGAACATCGCTGTAGCCTTGACCACCAGCAggagacagcacagagacagcccGGAGATGAACCTGAGTCGGACTCAAAACAGAATGCTGGAGAGTCTGGAGTTCATCCCTCAGCATCATGTTGGTCCTGTTACCATGGAGAAGTATGACAGTATCCGACGTTACCTCATCAAGGCGTGTGACATGCCCCTGCACCCCCTGGGCAGGCTGATGGAGACCCTGGTGGCTGTCTACAGGATGACCTACGTGGGGGTGGGGGCCAACCGCCGCCTTCTGCTGCAGGCTGTCAACGAGATCATGTCCTACCTGGCCCGCATCTTCCAGCTCGTCAGGTTCCTGTTTccagatctgcctgaggagggtGGAGCGATCCCTGAACCATCCTCTGACCCCCAGGACAAGAAGGACTCCAACTGCGCAGACACCCAGCTAGAATCCCCCAAACCTGGGCGTGTGGTGAGTAGCTCCGCTCTGCTCCTGCCGGTGTTGCTGCCTcgtctctacccccctctcttcaccctgtacgccctggagaaggagaaggaggacgACGTGTACTGGGAGTGTGTCCTCCGCCTCAACAAACAGCCAGACGTGGCCCTGCTCGCCTTCCTCGGCGTGCAACATAAGTTTTGGCCGGTTTCGGTTCCAGTGCTGGGGGAGAAGACCGAGGTTGTGTCCAGCACAAAAGACGCCTGTTTTGCCTCTGCAACGGAGACCTTACAGCAGATCAGCACAACGTTCACCCCATCCGACAAGCTGCAGGTGATCCAGCTGACATTCGAGGAGATCACAAAGGAAGTGATGTCATCTCTGGAGGATAACTTCCTGTGGTCCATGGACGACCTGTTTCCTGTGTTCCTCTACGTGGTGCTGCGCGCCCGGATCAGGAACCTGGGGTCAGAGGTGAGTCTGATAGAGGACCTGATGGACCCCTGTGTACAGCACGGAGAACACGGCATCATGTTCACCACACTcaagGCGTGTTACTATCAGATCCAGCATGAGAAGACCACATAAGAACCACAGAGAatctctgtactgtatactgCAGCAGCTCTATGTAGTGGCAGTCAGCCAATTAGAGGGCAGGGTTGGGAGAGGTTTGGAGTGATGCTGTCTCAGGGTCGTCACAGGAGGGTCACgatgactgacagacaggctgctGAGTGTCCATCTGTTCCCCCGTAGCAGGACCACCTCCCccttacatacacacatacactgacgCATGCGCTTACACACACATACGTAAACACCCACACACTACACAGCtccccgctctaaccactacctttTGGTGACCATGTCATCAGGCTCATACACCTACTTGATTGATCAGGTTGACCTCTGTAAACCCAAGGTGTTGTAAAACTGTATTGGCAGTTTGGCCAGTTCATCTGTCCATAGGCTTTGTGACTCCTTAGCCCCTGAATGAAGGAACCTGCTCCTCGAGCCGTCTGGAATAGGGGCTTACTGTGATGTGCGCCGAGCCAGTGGCGATTTAGCTTGATCGTGGACTGTTGTGAATATGACTGGCTATTTCCTATTCGCGCTACACTAGTGGCAGAGATGATAACCGCCTCGTTTGTCACCCAGCTCTGGTAGTGAAATGGAAGTCTATGAAGAGAAACTGCAACGTTTAAAATCCAAGTGAGACTCACCCTGAACTTGGAGCCTGTCTAATAACAAGACACCatcctgtatgtacagtataaggTGGCAACTTCCATTGGACCTCAGCCCTCAAAAGCACATGTTATTTAATGGACCAACGCAATATGTCACATTGATGCCACTTAAAACACGGAAAAGGATTTAACCTCCGTGATATCTGAGGCTGTGTACGGATCGCTAGCCTGCGCTAGCCTGCGCTGTTTTGTAGTTGAAATGTCAAATGCACACTCGGTACAGTTTTGGTGTTATTGTTGTGTTCATTGTTCGGGGGGGGAACAGCTCTGTATTCAGGTGATTTTTGAAGATGTGAGGTTGGGTGACGCTCTAATTTTTCTCACGTGATGCAGTTAAATGACAGCCAGCTAATGTGCACCTCAAATGCTAGCCTTTTAAAATATTTCCATTCGTACTGCGTCATATGTATTTATAACCACTCTGTTTGCGCGGTATTTATAATGCTACAAGGTGTTTGTTTTTTCAGGTCACTTTGTTATTGTACACCAGAGCTGTAATTCAAATGAGCACCTATATGAAATGTTGACATTTGATGGGTAACACACAGTAGAagccattttctttttttttgttataaATCTCTTCCTGCAATATAGCTCATGTAATGTTCATGTTTGGGGTTTGTCAAATCAGATTGAGGCTATTACCAGGAAGCAATATTGTTAATGTATTTGTTTGGTGTGCTCCTTTCATGCAGACAGACTTATGACAGTATGATGCAGTATTTGTTACTACCTGCAAGGCAATCACTACCCTGAAAAAACTGTCTCTGTTCAACTAGTTGGGGGCTGATCATGCTGTAGTGGCATTGTGATGGTTAGACAGTGGTTATACAGTGACATTGAAGTTGACCAAAAGCAATTTTCTTTTTTTATATCTCAAATCTAGGCAGAATTATTAATCTGGGGAATATAGTTTGTTACAACTATGAATTGAGTGTTTGATGGGACACGCAGTACATAAGAATTGCTATTTTAAACAGAATTTGATTGTAGCCTGGTATTTGGTTTATTCAGCTTGTTTGTAATTTGTATGGTCATTCCAAGATTTACCTCCATTTTCCCCAATAATTCCTTTGGCAAGGACTGGTTATTTATCTGTATATTTGTTTACACCTGAAACACATGACATGCTTCATGATAGGAAATGTATCAAGTGTTTGACCCATAGACTGACTAACACATCTTCCTTCATAGATTATGATGTGACTGCTTGTACTTCCAAGGTGTGTTCAATTGGGTAGCGTTATCTGTATGTTGTCACGGTCTTTTTTAGGGGAATGATGTCACCATTTGTCTAATGTACATCTTAATGTAAAGAAAGGGCAATAAAGCGAGCTGACAAATTTCCCTTTTAAATGACATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750309 lncRNA upstream 4720 24073803 ~ 24074013 (+) True G1528755
TU1750308 lncRNA upstream 5620 24072718 ~ 24073113 (+) True G1528754
TU1750301 lncRNA upstream 8468 24068776 ~ 24070265 (+) True G1528752
TU1750294 lncRNA upstream 19778 24058593 ~ 24058955 (+) True G1528745
TU1750293 lncRNA upstream 20463 24058067 ~ 24058270 (+) True G1528744
TU1750320 lncRNA downstream 2865 24103507 ~ 24103836 (+) True G1528762
TU1750314 lncRNA downstream 5568 24106210 ~ 24107775 (+) True G1528760
TU1750324 lncRNA downstream 29287 24129929 ~ 24130679 (+) True G1528766
TU1750337 lncRNA downstream 164880 24265522 ~ 24265839 (+) True G1528779
TU1750347 lncRNA downstream 178260 24278902 ~ 24279115 (+) True G1528789
XM_021571368.2 mRNA upstream 81131 23994022 ~ 23997602 (+) True LOC110495871
XM_036952331.1 mRNA upstream 160088 23911979 ~ 23918645 (+) True LOC110495865
XM_021571354.2 mRNA upstream 299101 23769548 ~ 23779632 (+) False LOC110495861
XM_036952346.1 mRNA downstream 10630 24111272 ~ 24118133 (+) False LOC110495875
XM_036952340.1 mRNA downstream 13648 24114290 ~ 24116592 (+) True LOC118941123
XM_036952341.1 mRNA downstream 16663 24117305 ~ 24122645 (+) False LOC110495875
XM_036952342.1 mRNA downstream 16663 24117305 ~ 24122645 (+) False LOC110495875
XM_036952343.1 mRNA downstream 16663 24117305 ~ 24122645 (+) False LOC110495875
TU1749630 other upstream 917442 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 1467281 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 1467281 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 3321321 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3595020 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 420093 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 904119 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1048341 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1054091 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1465829 25566471 ~ 25571346 (+) True G1530785

Expression Profile