RNA id: XM_021571380.2


Basic Information

Item Value
RNA id XM_021571380.2
length 1590
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110495876
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24122756 ~ 24134227 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCTCAGCTAAAAATCACTGTAATGGCAAGGCAACGAGTGTAAACAAAGTGGTCGGGTAAACACCGTGGCTACCAACATGCGGACGTTACAAGCCCAAAACGTTTTAACagctaggtagctaactagctatctcTTATCGGGGTTGTTTTAATAGGGTATCCCGCAGAAATGGACACAGGAGGATTCCAGGAACAAAGTTTGCGACGGAGGGACCTTCCGCCTCTTCCACAGCGTGGACAGCGTGCCCTGCCCCCCATGTCAAGTCAAGATACAGGTGACGAGATGCCGGTCCCTAAAAGCAAGAGGAAGAAGTCGAAGAGTCAGGTGGATGGTGTTGAAAGCCCAGAGGACTCAGGGATGGAGATGGCCCAGGTGGGGGGTCTGAGCAGTCGTAGGTCATCTGAGGTCATCCAGGCCTTGACCCCCGATTCGCCGGAAGCTGCATCAcagagaaggaagaagaagaaaaaggcaGCGACCGTAGACATGGAGGATGACCAGGCTGACCTGGTGAATGGTGATGGACTGGTCCAGAACACAGCAGAGGCAGGGGAAGAAGTGACCAAAAAACCCAAGAGGAAGAAGAAGTCGAAAGTGTCAGAGACACAGTACGTCAACGAGCTTCATGTAGAGGACGATGACATCATCACAGACGCTCAGCCACCCGTCCCCCGGCATTCCCTGTTCTCTGCTCCCCTGGGACAGAGCCAGCCTGTGGGGAAGGTGTTTGTAGAGAGGAGCAAGAGATTTCAAGCGGCCGATCGGTCAGACAGACTGAAGTCCAGCGATCAGGTGGACAACTTCGTGGACATCCAGCAGATGTGGACCACCAAGGATGTGTCTGTTAGGGTACATGGTGGCTTCAGGGGGGTTGGGCTGTTCTGCCACGGCTTCCTAGCGGGCTATGCAGTGTGGAACATCATAGTGATCTATGCCCTGGCAGGAAAACATCTCACTACTCTGCCTAACCTACTGCAGCAGTACCACAGCCTGGCCTACCCTGCACAGTCTCTCTTCTACCTGCTACTGGCTATAAGCACCGTGTCAGCCTTTGACAgGGTGAATCTGGCCAAAGGCGCCATGGCTATGAGAGAGTTTGTCACCCTGGACCCAGTTGCTCTAGCCTCTTTTTTGTACTTCTCAGctctggtcctctctctcagCCAGCAGATGACCAGTGACCGCATCAACCTGTACCCCAGTGCTAACGAGACCTTATGgcCTCCTGGGTCAGAGCAACAGATCCTGAACCCGTGGATCATAGTGAACCTGGTGGTGGCTGTGCTGGTAGGAATGGCCTGGATCTTTATCTCCACTAGGCCTGAGATGGACTACACCGAAGGATTCCTAATGGCTATGGAGATCGAGTCCTTGAGACCAGAGGAGAAATCAGAAATGTCTACTTGAGGAATTGTATTTCCATTTTTTTCTTGCACATCTTTTTTTGTGCTGTATTTTATCAGCCAACACAAAATGTACACCTTGTTTGTGGTAATAAGCAGTTTATTTTTGTATGACCCAAATGTGTGCTTGTTTTGTCAAGTGTATTGATTACCATTGGAAATAATAAAAATGTTATCCCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750314 lncRNA upstream 14981 24106210 ~ 24107775 (+) True G1528760
TU1750320 lncRNA upstream 18920 24103507 ~ 24103836 (+) True G1528762
TU1750321 lncRNA upstream 35681 24086854 ~ 24087075 (+) True G1528763
TU1750309 lncRNA upstream 48743 24073803 ~ 24074013 (+) True G1528755
TU1750308 lncRNA upstream 49643 24072718 ~ 24073113 (+) True G1528754
TU1750337 lncRNA downstream 131295 24265522 ~ 24265839 (+) True G1528779
TU1750347 lncRNA downstream 144675 24278902 ~ 24279115 (+) True G1528789
TU1750349 lncRNA downstream 145627 24279854 ~ 24280075 (+) True G1528791
TU1750350 lncRNA downstream 147134 24281361 ~ 24281731 (+) True G1528792
TU1750352 lncRNA downstream 152413 24286640 ~ 24286937 (+) True G1528794
XM_036952342.1 mRNA upstream 111 24117305 ~ 24122645 (+) False LOC110495875
XM_021571383.2 mRNA downstream 13774 24148001 ~ 24153085 (+) True LOC110495879
XM_036952373.1 mRNA downstream 19018 24153245 ~ 24167595 (+) False LOC110495878
XM_036952356.1 mRNA downstream 19019 24153246 ~ 24167595 (+) False LOC110495878
XM_036952361.1 mRNA downstream 19019 24153246 ~ 24167595 (+) False LOC110495878
XM_036952362.1 mRNA downstream 19019 24153246 ~ 24167595 (+) False LOC110495878
TU1749630 other upstream 961465 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 1511304 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 1511304 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 3365344 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3639043 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 386508 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 870534 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 1014756 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 1020506 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1432244 25566471 ~ 25571346 (+) True G1530785

Expression Profile