RNA id: XM_036952376.1


Basic Information

Item Value
RNA id XM_036952376.1
length 8173
RNA type mRNA
GC content 0.50
exon number 41
gene id LOC110495884
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24222829 ~ 24263106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAGTACTGTACTTGGCTCCACGCATACAGTACGTGCGGGTTCATCGTCTACTACTAGCTATAATACTCCTGTTGGAAGTCCAGTGTCTCTTGATTTTTTCAGAACAAATCTGAATTGAAACGAGCGGCTGGATGCAGATGATTGGTCTACAGGAAAGTGAAGAATTACTGAAGAATGAAGTACAATCATTTCAGCAATCCTCTTCTTCATCCTCAGTCCTCTTGTCCACAACTGATCATATTTGTAGTTTGATCTGGAACACGAGTGACTTAAAGCCCCTGGACAGTTCCTGACTGGACTCTGTTATCTCTGCATTCTTGACTTCCCCGTGATTTCATCTCCACAGCATATTTTTGGGAAAAACATTACACACTTTCTGGGATATAGGAAAGTGTGTAATATATCTGGGATATAGGCCTACACTACACTTGAGATCTTCTCTGTGAGCAGTCTAGGCCTATACATTTTCCCTTGTCTCGTGATATTGTGGGCGTTACACCATTGGTGAGACACTATGGAGTGGAATATGGAGTACTGTATGGAACAGGTTATGCAGAAGGACCTGGGTAGGAGACTACAGGTGGGCCAGGACATCATAGACTCCATCCTGGACAAGGACAAGTCCCAGGTCCTGGAGCAGGACCAGACCATGCTGGACAGAATGGTGGATGGTGTCGCTACCAACTGGGTCAACTCCAGCAATTTCAAGGTGGCTTTGTTGGGAATGGACATACTCTCAGCTTTAGTAACAAGACAACAGGAACGGTTTAGGACACAGATTGGAACTGTTTTGCCGAGTTTGATAGATCGACTAGGCGACTCAAAGGACCAAGTCAGAGACCAGGACCAAGCTCTTCTACTAAAGATCATGGACCAAGCTGCTAACCCACAGTATGTATGGGACCGAATGTTAGGAGGATTCAAACACAAGAACAACAGGACCCGGGAGAGTGTCTGCATTTGCCTTATCGCCACGTTAAATGTATATGGAGCTCAAGGCTTGACCCTCAGCAAAATTGTCCCCCACATATGTCATCTTTTAGGAGACCCTACAAGCCAGGTGCGAGACGGGGCCATGAACTGTCTTGTTGAAATCTACCGACACGTTGGGGAGAGGGTGCGGATGGACCTCGGGAAAAAGGGACTGCCACAGTCACGGTTGAATGTCATTTTCAGTAAATTTGATGAAGTTCAACGATCGGGGAACATGATCCTGTCCCCTGTCTCAGATAAGAACTTTGAAGATGATGATTCGGTGGACGGGGGGCGGTCCTCCTCTTCTAAGGGCCCGTCGTCAGGGAAGAAGACAGTGAGCATGGGGTCGTTCCGTAGGCCCAGCTCTGCTTCCAGCACCAAATCAACAGGGAGAGATGGTCCTAGTGCGGCTGCTGCAGGGGCTGTGGATGAGGAGGACTTCATCCGTGCCTTCGAGGAAGTGCCCGCTATGCAActttTCTCTAACAGGGAAATGGAGGACGCCATGACCAAGATCAGGGAGGTGCTGGCTGACGACAAACGAGACTGGGAGCACAGAGTCACTGCGTTGAAGAAGATGCGTTCTCTGCTCCTGGCGGGAGCGGTGGAGTTTGACGGTTTCTCCCAGCAGCTGCGTCTCACGGAGGCAGCCTTCAAGATGTCCTCTAAAGACCTGCGCTCTCAGGTGGTCAGAGAGGCTTGTATCACTCTGGGCCACCTGTCCTACATCCTGGGGAACAGGTTTGATCATTGTGCTGAGTCCATCATGCCCACTCTCCTAACCCTGGTCTCTAACTCGGCCAAGGTCATGGCCACATCCGGAATCGCTGTCATACGACTCATCATCAGAcATACACACTACCCTCGTCTCATTCCTATCGTGACCGGCAGCTGCCAGTCCAAATCTGTGGCCGTGAGAAGGCGCAGTTTTGAGTTCTTGGACCTCCTGCTGCAGGAGTGGCAGACCAGCTCTCTAGAGAGGAATGTAGCTGTTCTGACAGAGACCATCAAGAAAGGAGTCCATGATGCAGACTCCGAGGCCAGATCAGTGGCCAGGAAGTGCTACTGGACGTTCCACGGCCACTTCAGCCGGGAGGCGGAGCAGCTGTTCCAGGCTCTAGAGTCGTCCTATCAGAAGGCTCTCCAGTCCCACATGAAGAGTTCTGACAGCATCCTGTCCCTCCCTGCCTCAGaccgctcctcctcctcctcacaggagAGCCTCAACCGCCCTCAGTCTGCCAAGAGCTCCATGGGAAACACTGTGACCAGGACAAAAGTGGCTTCCTCCAGAGGTCCCTCCACCCCGGGCTCTCTACAGCGTTCCCGTAGCGACGTGGACGTGAACGCTGCCGCCACCGCTTGTGCCAAGACCAGGATGACTCCCGTGCCCTCCTCGCCGGCCCCCTTCAGCGCTGCCTCCGCTCTGCCACCCGGCTCCTACGCctctcttgACAACACACCTGGTAACATTAGACCAGAGGgcCGCGTGCGTACCAGGAGAACGAGTTCGGGGAGCGGTGTGGGGGCGAGTCCCTCTGTCACAGACAGTAGGGGGAGAAGTCGAGCCAAAATGGTGTCAGTGTCTCAACCTGGCAGTCGGTCTGGCTCCCCTGGTCGTCTCCTGAGCCACACATACGGCAGGATCCCCAGGGCAACTGGAGTGACAACGCCAGCAGACAGGAGGCCTAAAGTCCCCCGTAGCCATGGCTGCAGCCGAGACACCAGTCCAGACAGATCAGGCCTGGCGAGGAGTCGTATCCCCCGGCCCAGCATGAGTCAGGGCTGCAGCAGGGACACCTCTAGGGAGAGCAGCCGGGACACCAGCCCCGCTCGGGGATTCTCTCCTCTGGCGTCCAGACGTGTCTCCCGCTCCACCAGTGCTCTCCACTCGGCTGAGTCCGTAGGCCACTCAGAGCGTCTAGGTCTGGCCCACCAGGCCCGTATCTCAGCCTCTGTCAACGCCATGAGGATCCTCAACACCGGGACCGAGGTGGAGGCAGCTGTAGCCGACGCCCTGTTACTAGGAGACGCCAGGAACAACAAGCGGCGGCCAGTCAGGCGGCGGTACGAGTCCCCGGGCATCTACTCAGACGACGACGCTAACAGCGACGCCAGCAGCGCCTGCTCTGAGCGCTCGTATGGCTCGCGGAACGGCGGCCCGCCCCACTACATGAGACAGACGGAGGACGTGGCCGAGGTGCTGAACCACTGTGCCAGTTCCAACTGgtctgagaggaaggaggggctGCTGGGACTACAGAACCTGCTCGTTAGCCAGAGAATTCTCAGTCGTGTGGAGCTGAAGCGGTTGTGTGAGATCTTCACTAGGATGTTTGCTGACCCACACAGCAAGGTGTTCAGCATGTTTCTGGAGACCCTGGTAGACTTCATCACCCTGCACAGAGAGGACCTGCAGGACTGGCTGTTTGTCCTGCTCACCCAGCTGCTGAAGAAGATGGGAGCTGACCTCCTGGGTTCCGTACAGGCCAAGGTCCAGAAGGCTCTGGACGTCACCAGggACTCGTTCCCGTTCGACCAGCAGTTTAACATCCTGATGCGTTTCATCGTGGACCAGACCCAGACCCCCAACCTGAAGGTCAAGGTGGCCATCCTGAGGTACATTGAGTGCCTGGCCCGTCAAATGGACCCCGCAGACTTTGTCAACTCCAGCGAGACACGCCTGGCCGTCTCCCGCATCATCACCTGGACCACGGAACCAAAGAGCTCCGACGTCCGGAAGAGCTTCCACCATAGCTGGGCAGGTGAGGAGTTGTCAGGCAGGCCCAGCACCACCGTAGCCTCTCTACATGGAGAGGGGAACGTGGAGGAGAGGTGCAAGCAGGCGGCCCAGGTGGTTCTGATCGCCTTATTTGAGCTGAACACCCCAGAGTTCACCATGCTGCTGGGAGCCCTGCCCAAGACCTTCCAGGACGGAGCCACTAAACTGCTGCATAGCCACCTGCGGAACTCCAGCAACACCGGAGTGGCTTCTCCCAGTAGCACCATGGGGCGGACTCCTCCCCAGCCTCGCCACCCCAGCAGTCGCAGcagccccctcacctctcccaccAACTGCTCCCGTGGGGGCGCGCTCTCTCCCAGTCGGCTATGGGGTTGGAGTGCCGATGGCCTGTCAAAGtacccccctcccttcccttctcctctctcctccaccgcTGCTGCCCCCTCCCTGAAGACCCTACGAAGTGCTTACTCTCCCAGCATGTTGGAGTACGACACAGAGAACCTGAACACCGATCAGATTTATAGCTCCCTGCGAGGCGTCACTGAAGCCATCCAGAACTTCAGCTTCCGCAGTCAGGAGGACCTCATGGAGCCGGGCAGAGGCAAGAGAGAGGACACGCCGGGTGTTGGACCAGCATCACACTCTGGTGCCGACGTGGTGGAGGGGCCCGGGGGTCGCACGGCCCTGGACAACAAGACCTCCCTACTCAACACCCCCTCCCAGCGTTCCTTCTACAACCCCTACAACTACTCTGACACCATCAGCGCTTACGACAAGGCTGCCCTGAAAGAGACGGTGTACGAGGACGACGTGGAGCAGCTTCGAGATGGCCGCCAAGAGTGTGGTGGAGAAAACAAGATGCTGCACACCAAGAACAGTTCCCCTGCGGAGCAGCTGGAACTGGCGGGTGAGCTGCTGAAGGAGCTGTCTAACCCCAGTGAGaggccagaggagaggaggggagcccTGTTGGAGCTGCTGAAGATAGCCCGGGAGGACAGCCTGGCAGTGTGGGAGGAACACTTCAAAACcatgctgctcctgctgctggagACCCTGTCAGACCAAGATCACACCATCCGGGCCCTGGCACTACGAGTGCTGAAGGAAATCTTACGTAACCAGCCGGCCCGCTTCAAGAACTATGCAGAGCTCACCATCATGAAGACTCTGGAGGCACACAAAGACTCCCACAAAGAGGTTGTGCGGGCAGCAGAGGAGTCAGCCTCCACCCTGGCTGGCTCCATCCACCCAGAGCAGTGTATCAAGGTGCTGTGTCCCATCGTCCAGACGGCTGACTACCCCATCAACCTGGCTTCCATCAAGATGCAGACCAAGGTGATCGAACGCATCACCAAGGAGTCACTCCACCAGCTGCTGCCTGACATCATACCAGGACTACTGCagGGGTATGACAACACAGAGAGCAGTGTGAGGAAGGCCAGTGTGTTCTGTCTGGTGGCTGTCTACTCTGTCATCGGTGAAGAGCTGAAGCCCTACCTGGCCCAGCTCACAGGAAGCAAGATGAAGCTGCTGAACTTGTACATAAAGAGAGCCCAGACATCcaccagcaacagcagcagctctTCAGACATCTCCTCATACTAATGAGCATGGCCCTCCGGCTTCATCCATGTGTGTGcaggtacatacagtacagggtTATGTTCATAGGGCACCAAATGGTGCAAAACAGAATGAAACAGGAAGGGACTACCTGGACTActggtccaataagaaacactaattttattttatttttaccgtTTTGAAATATTTTCCGTGGCGTGCCCTAATGAACGTGACCCAGATAGGGAAACAGTTGTGCCTCAATCTTTCTTTCCAGACCTCCTTGTGGTTTAATGTATTCTAATAAAGGCTGTAGGCTGTTCCTGGTTGGGAAACCCTATGCCTGTTGCAATCAGTATTTTATTTCCTGCTGTTTTGTCGTCTTGTAAATACGTTTATTCCACCTTTTTTATTAAGATACACTACTTCAGACCTAGTCGAATGAATGTAAAGAGCTTTGAATGAAACCGGAGTCCTTTTTAAACCGTCTGAAAGGATTTAATGTTGATGGAAGCAGAGTGTCGCTCTGCACACGACCGCCTCattgcctctgttccttctcgcGATGGACAGATGGGCTTATTTGGAAACGTGCTATTTGTAAAGGGGCAGTTTAAAAATGACGATTTTGATAGTAATTGTCCTGTAGTATTTGCCGTctgaagaatttgttcttagtgACGATGCTATGTTTTTAAGCCTGTATTTTAAAGAATAATTCTTGTGAAGCGATAGAATTTCTTAGTTAGTgagaatctaaaaaaaaaaaaacgttcattTCCATTAGTGGGAGAAGATCATTTGGCTGGCCAATGATTAGTACATGCAGTGAAAAGCTGTGTTGTAAACTGCTTCTGTGTGTAACACCTGTGTTTTGACTGTGGTTTGGGCCCAACAACTAGTGAAGGAATGTTTTCCTTTTTCACAAGGATTACAGTCTCACCCTTCATACATTATTATTATGGAAGGGGAGTTATTGGTTGAGTTGGTGGCGTTTTGAGTCTGCTGTTTCTTTGTGCTTTAACATTCGGGCCACGTTGTAATGAGTCAAAACTACTGGGATCTGAAGTATTCTTGCAAATGTATGAGTCCTAGAATTTTCAAATGTGAAGTATTTAGTCTAAAATCGAAATATGGGCAGTACCTATTCGTCACATAGTAGAAAGACAATGACAATCTGACATATTAGTCGATAATCTTAAGGACATTTTAAGTGCCAGtgcaaatattattattttttacaatttaaagacagggggaaaaaaaatatgtattttaaattGAATCCAGCAATAATGAATTAGTTACAAAAAATCCAACTACTtggatacatttttttgtcaAAGCACTGTAAATGACCATTGTAAGTTAAACCGTCCTTGTTTGAAATGTATAGATGTCATTTTTATGCGCACCTATGAAATGTTACTGCTGCTTTAGAAATACTAATCATGGCGTTAAACCTAATGTATTTTACTCTCCTTATTATGAATGTTAAAGGTTACAGTTGTTTCGGTTAGAACTAGAATTcagagttggggtcaattccatttcaattcagtccatTCAGGAATTCCAATTCCCAATTTTCCTCAATGATTGTCTATGGGGATAAAAAATGAAAttgcaatttcagtttacttcctgattTGATTGAAAGGAATTGAGCCCATCCCTTGTTAAAAGTCCAGATCAAGGTGGCTTGTTACTGAGAACACTATCGGGCCTTactgtttctgtagtacagtttCACTACATTGACTGTTAAAATGTACTGTAACAGTGCACAATGTTTCTCTTTTTCTCAAATGTGAGAACTCAGCAATTTTATCAGCTATGGCTATGACCAAGTACAAAATGTTGTCAAATACAAACACAGTATTTCTTTTGTTAGACTTGCCTGTTGCAATTGAATCAAAAATGAAACTCAAAATGAGTGTTTTGTACAGTACTTTTAATCATTGATTCAGAAACTTGTTATAAAAAGAGAGTCCGAGAGAGACCTCGTTTGCATGCGAGGGAACATGCAATATTATACCCAGCAAACCTCAATGATTAACTAACATTCCCAACTGCGACTTTATGTTGAAGAAACGTTGCTTCTAATCTATGAATGTCTGGTCAGCTTGTattatataacacacacactatggaTATCCATCACAGCTACCAAGCTAGGGCTGATTTAACAGACCAAACATTGTATACTATACTGTAATTGTATGCTGTGTGCACACACTGGCCTGTATCAAAAACCAAACCCTATTATCCTCAAGCCATGTATCTTGAGTGTGTATTTGCTTGTGccttgttttagttttttttacagtATACCTGCAATACTAATCCATACTAATAGCTTCTGAATACTGCTTTTGAATTGTTGGTTTTTTTGCCCCTATTTCAAAATGCTGTATTATACATCATGAATTAGACAGGAAAGGTGTTGCGTCGAAGACCAAGGTtatgtcccaagtggcacccgattccctacccagtgcactacttttgaccagagccttgtgggacccggtcaaaagtagtgccctatatagggcataaggttccatttgggatgcatcccaagGCTGCTGTAAATAAAGCCAATAGTTTAATGGCAGTATTTTCCCACAGATGTAATATTGGCTTGGCTGTTCTATTCCTTGTGAACCATTTACAATGCATGCTTCTTCTGTTTAGCTTCAGTCATTGTTTTATCCCTCCCGTACCTATATTTATATGCCGTCTGTTATATTTTCTGTGTGTTATGACTGTACATATTTCATGTTTTGTTCACTTCTTTCACCCGTGATAGAATTAGTTGAAATTTAAACTTGAAATAAACCGGCTTCAGTCCCTGTCCGAAGCATGTAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1750324 lncRNA upstream 92150 24129929 ~ 24130679 (+) True G1528766
TU1750314 lncRNA upstream 115054 24106210 ~ 24107775 (+) True G1528760
TU1750320 lncRNA upstream 118993 24103507 ~ 24103836 (+) True G1528762
TU1750321 lncRNA upstream 135754 24086854 ~ 24087075 (+) True G1528763
TU1750309 lncRNA upstream 148816 24073803 ~ 24074013 (+) True G1528755
TU1750337 lncRNA downstream 2416 24265522 ~ 24265839 (+) True G1528779
TU1750347 lncRNA downstream 15796 24278902 ~ 24279115 (+) True G1528789
TU1750349 lncRNA downstream 16748 24279854 ~ 24280075 (+) True G1528791
TU1750350 lncRNA downstream 18255 24281361 ~ 24281731 (+) True G1528792
TU1750352 lncRNA downstream 23534 24286640 ~ 24286937 (+) True G1528794
XM_036952374.1 mRNA upstream 1730 24210985 ~ 24221099 (+) True LOC100653456
XM_021573101.2 mRNA upstream 21215 24199574 ~ 24201614 (+) True LOC110497103
XM_021571389.2 mRNA upstream 23399 24186332 ~ 24199430 (+) False shroom2b
XM_036951425.1 mRNA downstream 202432 24465538 ~ 24472111 (+) False LOC118941069
XM_036952400.1 mRNA downstream 208993 24472099 ~ 24477037 (+) False LOC110495888
XM_021571400.2 mRNA downstream 209071 24472177 ~ 24477037 (+) True LOC110495888
XM_036952401.1 mRNA downstream 257591 24520697 ~ 24525649 (+) False LOC110495887
XM_021571401.2 mRNA downstream 293131 24556237 ~ 24574771 (+) True LOC110495890
TU1749630 other upstream 1061538 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 1611377 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 1611377 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 3465417 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3739116 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 257629 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 741655 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 885877 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 891627 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1303365 25566471 ~ 25571346 (+) True G1530785