RNA id: XM_036952397.1


Basic Information

Item Value
RNA id XM_036952397.1
length 7518
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110497104
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24279738 ~ 24371432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagagagagaaccagattGAAAACATACCAGCCTGGCGTCTCAATACCACATTTCTGACGAAGAACGAACCACCCTCAAACCTTTTAGACCTCTTCAGGCTACAAAGTTCGATATCGTGCAATGTTTTCTTAGTAAGGGAGGATCGATTTCAAAAACTTGTTTCGTTTATTCTCGGTGATGGATTGTAAAAAGTTGAGTCGACACACATAAAGTCTTACGGTGAACTTTATGAAAAGTTGGGAAGAGGAATGTAGTTAGTCTTGATCGTGTTTAGGCTACTAGAATATAACTTATGGATTTCATCCTTGCATTGGAAGGAGTGTGTTACTTCTTGCTTTTTGACCGAGAAAGTTTGACCTAACGGTAATCTTCGATCGCGTTGCTTGTATAGAACTAGTGGGCAAACAGAACCGAGGGAGACGCACCGGGTCAGACCATACCGACCACAGGTATCACCACTGAGAGCTTCTGATGTCCAGAATGGAGACCTCTGCCCCGACGACCACAGAGAAGAAAGGCTCTGGTCTGGATGGAAACGGCTTCACTGACCTCCCGAGGAAACTCTCACCTTCAGCTGTCACCAGAGCCCCGCACCACGTCTTCCCGACGTTCCACACGCCCATCCCGATTGACATGCGTCACCACGAGGGAAGATATCACTATGAACCCCACACCCTACATGCCATGCATGGtcctggACTAGGTGGCAGCCCGGTCATGTCAGACATCTCTCTGATCCGTCTGTCCCCCCACGCAGCCGGGACAGGGGAGTCCCCCTTCAGCCCCGCTCACCCCTACTTCAACCCTCACATGGAGCACTACCTCCGCTCCATTCACAGCAGCCCAACCCTGTCCATGATCTCTGCGGCCCGCGGACTCAGCCCTGCAGACTTGGCACATGAACACTTGAAAGAGCGGGGTCTGTTTGggtttccccctccccctcctggaGCCAGCCCTGCTGAGTACTACCACCTGATGACCAGCCATCGTAACCCCTACGGAGAGCTGCTGATGCAGGGGGGTGGGGCGGCAGCTGCACACCTGCCAGACTACATCACCCCCATGGAAGCGTCACGGTTCCCCAGTCCCAGACTGACCCCCAGGCTGAACAGAAAGCGAGCCCTGTCCATCTCGCCTCTCTCAGACGCCAGCATCGACCTGCAGACCATGATCCGTACCTCGCCCAACTCTCTGGTGGCCTACATCAACAACTCACGCTCCAGCTCTGCAGCTAGCAGCTCCTACGGACACCTCTCTGTTGGAGGCATCAGTCCGTCCTTTACATTCCCCCATCACATCAACCCCATGGCCTACCAGCAGCTCCTGTCCCAGCAGAGAGGCCTGAGTGTGTTCGgccacacccctcctctcatccaGCCCCCACCCATCTTCTCCAGTCGCCAGTCTGCCCTgggtctctcctctctgccccccGCCTCACACAACCACAACAATGGCTCACAGTCAAAGAGCACATGTGGGGACTCGGCAGTGAGCAGTACAGTCAATCCCATGAAAACCAAGAGGTCAAAGGTGAAGACAGAGGTGGAGTATCCGAGGCCGCTGTCCCCATGCTCTCCGGATCATCTAGGTGGGATGCTGGGCCTGAAGGAGGACTTGGATAAAGATGAATGCAAGCATGAGCCAGAGATGGTGTATGAGACCAACTGCCACTGGGAAGGATGCTCTAAGGAGTACGACACGCAGGAACAACTGGTCCATCACATCAACAACGACCACATCCACGGGGAGAAGAAGGAGTTTGTGTGCCGCTGGGATGAGTGTTCCAGGGAGCAGAAGCCGTTTAAGGCCCAGTACATGCTGGTGGTTCACATGAGgagacacacaggggagaagccacaCAAGTGTACCTTTGAGGGCTGCTGTAAGGCCTATTCTCGCCTGGAGAATCTGAAGACCCACCTGCGATCTCACACCGGGGAAAAACCATATGTGTGTGACCACGAGGGATGCAACAAAGCCTTCTCCAACGCCTCGGACAGAGCCAAGCACCAGAATCGCACACACTCCAACGAGAAACCCTATGTGTGTAAAGTCCCCGGGTGTACGAAGCGCTACACGGACCCCAGCTCTCTCAGGAAGCACGTGAAGACAGTCCACGGACCAGAGGCCCACGTCACCAAGAAACAGCGCAGCGACCTGCCGCCCAGCAGACCCGTGCCACCCAAAGAGAATGGAGAGAACGAGACAGGCCGGGGCACGGAGGAGAAGATGGACAGCACCTCGAGAGGCATGGAGGACTACCTGCAGGTCAAGTCTATCAAGACGGAGAAGTCTGTGatgtatcAGTCCAGCCCTGGTGGTCAGTCGTCATGTAGCAGCGAGCCGTCGCCACTTGGCAGTTCCACCAACCATGACAGTGGAGTAGAGATGGCCCTCCACAGCGGCGGGGGCAGCATGGGGGACCTGACTGGACTGGACGACCCCTCGGGGCCCCTCGTGGACTCCTCCTTCTCTGGCCTCTCGTCTGGGACAGCAGGGGTCGGGGTGGGCCTCCACCTACGTCAACACCTAGGCCTCAGCCACATCCACAGACTAGAACACCTGAAGAAGGAGAAACTGAAGACGGCGAGGGACTCCTGCCAGTGGGCCAATCATCATCCAGCTCCTCCAGTCCAGAACACCAAGCTACCGCCCATACCAGCAAGCGGGACCCTTTTGGAGAGTGGAAATATGTGTGGCGGGCCTGGATCGTTCAGCCTCAGTGAGCTGTGTTCCAGTAAGGTGACTGTCCTAAACCAGCTGGACCATCTGATGGAGCGCAGGGACAGCGCCACCAGCACCGTCTCCTCTGCCTACATCAGCCGCCGCTCCTCTGGCATCTCCCCCTGCTACTCCAGCCGCCGCTCCAGCGACGCCTCCGCGTTCAGTGGCCACCGCCACCACAACATCAGCTCCACCGGCTCCTACGACCCCATCTCTGCAGACCTGTCCCGCCGCTCCAGCGACGCCAGCCAGTgtgggggtggtggaggagggggacgGCTGCCCAGTCACCTCAGCCTCACCCCCGCCCAGCACTACCACCTCAAGGCGAAATATGCGGCGGCTACAGGCGGAGCCCCACCCACACCTTTACCCAACATGGAGAGGATGAGTCTCAAGACCTGCTTGGCCCTCTACAGGGACGCTTCCCAGGGAGACTCGTCGTCTGGTTACTCCTCCTTCGACCCCGTTATCCCCAGTGGGGTTCCCAGGCGCTGCAGCGGCGATATGGGAAACTATAACGGCCGCAGCATGATGCCCCACGAAGCTCCGTCCAACATTCCCCGTCGGGCTAGCGACCCCGTCCCCCGGCGGCCGTCCCTGGACCCACTGTCCCCGCTGTCCCATCAGCCTCAGGTGCAGCGCTACAACAGCACGGGCAACATGCAGAACCTCCCCCCACACGCCTCCCTGCCGAACCAGGCCCTGTCTGCAGCCGAGCGGCGCCACCTGGTGCTCCAGAGCCACCAGCCGCGCTCCGACGACAGCCTGCAGCGATACCCCTACTGCCCCCGGCCGCCCAGCATCTCTGAGAACGTGGCCATGGAGACCATGGCCGGCGATATGAGCGGTAGACGCAACAGCAGTGAGGAGGAGATGATGGTACTTCCGGATGACGTCGTTCACTACATCACCGCTCAGGGCGGAGCTGGAGAGTCAGACTGTGCCAACCGACAAGCACAATGCGGTTTCCATGGAAACGCAATAAACCCTAACCCCCAGCAACAACAGCAGTTTTACCACCAGCGAAGGATGGCTGTGGTGGACACCAATATGAGTATGAACCCTTCGTCTGCACCACAAACCAAGCGCCTCTCCTGTGCCCTAAGCCCAGGCCATCCGAAGCAGTCTTTCCCCTCCTCACTCAGTAAGACGAGCACCATGCCGGTACAGTGGAATGAGGTCAGCTCAGGGACTGTGGAAGCTCttcacaacccaacccaacatcTGCCGTTCGGTCGAAGCGACTCAAACCTCGCCATGGTCCAACAGAAACAGAACTTTGTCTCGTTTCAGAAGCAGAATCTTAACTCCAACCAACACATTGCACAGATTAACCACAACCTGGCTCATGCAGCTCATCAGGGGAGATACATACAGCAGCAGAGGACAGACTCCAGGCTGGGCTGTGTCCAGCAACAGAGCCTACAGCAGCAGCAGCCCGCTAATGCTAACCTCAATGAACGAGTGAGCCTCGAGTATGGGTTTAACCAGGGTCTCGGTCCTAGTGATGCTAACGCTAACCAGCGGTCCTCCTGTAGTAGTATGGCAGTTGGTGGCACAGTGCACAGTGTAGACACGCAGAACAGCCGACTGAGGACGCAGCCAGTGGGGAGTCAGTTGTCTCAAGTCACATTTAAGGATAGCGGTGTGAACTCTTCGCGGATGATCTCACATCAACAGAAATATAATATAGCGTCCCAGGTTCAGCATCCTATACAGAATGGAGGTCAAATACTCATCCAGCCAAGACCGCCCACAGAACATAAGTCTCTAAGCAGACAGCATTCAGGGTCAATGACAATCCAGCGACAACACTCAATAGGCAATCACTGCAGCAATGGCAACAACACAGACAACAATGTTATGTTCTACACAGGACAGATGCACGTGTTTGGGCCAAACGGGAACGTCAACACGCAGACGATGACATCACCAGTAGTGGATGTTCTTCAATGTCCCTCAGACAGCACTGAGACCTCAATGACCTCACCGGGAGTAAACAACCAGGTCTCCAGTACGGTGGACTCGTCCAATGGGACAGGGGCAGAGGAGCCCCAGATTGACTTTGACACCATGCTGGATGATGGGGACCACTCCAGCCTGATGTCAGGCACCATCAGCCCCAGTATCCTCCAGAGTCTGTCCCAGACCTCCTCCAGACTCACCACCCCCCGGAACTCTGTCACCCtgccctcccttcccctccctgcAGGGGGCAGCAACATGGCCATCGGCGATATGAGCTCCCTGCTCACCGCGCTTGCAGAAGAGAACAAGTTCCTCAGCATGATGTCATAAGGATGATCCCAAATACGCTGAAGGCAGACACAGGTAAAGCACACGGTACCTACCTTGGTGTATTTGGCCCAGGACGTGTGTTAAAAGAAGTGACCTATTGTAACCCAAGCTCTAAGAACGATAGTTTATCTGCCACCAAGAGTTTAAACTGGCTGTGTGAATGACACGAGGGGAACCTACTAGTTAACATTGTTGCAGAGGTCCTCCTGACCATGTGATTGAACACTAAGCACCTCATTGGAGAACTTTGACGACCACCAGAGACTAAGGAACCTATGAGATTCTGAAGACTTCATGCTAAAACACCACTATGTTTGTGCTACTTATTGTATTATCCTGTACAGTATCATTATGGAGCTAATATGGCGATTTCATATCTATTGAGAAGCCATATTTTGCCTTAGATGAGTAAGTAAGTACATTGTGATCCACAGCACAATTCTGTTAATGTTGTACATGAGATAGTGTACAGTTCTGCAGTAAAACAAGTTTACCAAGTGCCTGGCTATGCCGCAGAATATGCAAGACACGCATATGACACAGATCGCATTGAAGTGCAACCAGATACCGATTTTGGGATTTTTTTCTATCATTTAGTTATTTAAAGACACACATATATGTAAATTGTGTAAATGACTTGATCTAAAAAAAAAACCCGATTTGATTCTGTCTCTCAGATCTTATCTGAAACTCATTCATCTGTGCAGATTAgatgttctcttcttctgtcAGTGAAGTTGCAGCAACAAAAGAATCTGGGAGAAAAATGATTAAATCATTCAATAGAGTCAGAGGAAATCTTTTTTTCTAATCTATTtagtcatgtcaggtctactTCCACACAGTGTCTTCGATATGAGCCGTCGTCTTATTTGTCTGCCGCGTTGAGTTGGACTACTGAGATGAACAGTGACGTCTCAGTGTCGGGGACAAGTTGTGGCTGGAATTAAGCAACCACTTCTGAAGAATATGCAAACGCTTGATATGATACATATTCTGGGGGTGACAACATTGCTATTAACTCTTGGTGATGAATTAGGAAAAATCTAAAAGGGAAAGAGAATCCTCCTTTTCGGTGTCAAATGACTTTTTCTCCAGTACCGCCCTTGATGATGACGAGGATACTAAGATATCATAGTGTATTAGGAATctacgttttttttttgtatactGCCATGCAACTCTGTTGTGTTGGATATGTATATATCTTTTGTACATTTTTATGAAATACAATATTGTTTTTTTTGGGTTTTTTCTATTTAATTGCTGTCTGGTGAGTTATTTCAAACCATGGGTGTTTTTTCTCATGGAATATGACATGTTTGAAATTATGTTGCGTTGTTTTAGGTCTCCAATATACAATACCAGGCCGATTGAATTCAATTGGCCTATAAAATTCACATATAAAGAAAAGTCCCATGTACAGAAATCCCCCCCACAATATAAATGGTACGTTGTTATATTTCCCACTCCTTGGTTCAAAACggaacatagagacagtagacacaATAGACAGTAGCCAGTACATCAGAGAGTTGAACTGTTCTTTGAAAACCTCTCCTTTAATCTTATAAGTATATGAGTGTTGATTGCTTAAATAATTCAGGAGGAAAACTTTCTTCTTTTGAAGCCAcacaagttctctctctctcctttgctgCCAACAAAGCATTTTTCCTCCCACATTGAATCCTATCATATCATATCTTATAAGACTATCTTTCAAGGTAATTATGGAGGCTTTGAAATAGGTTCTTCTGACCCCGTCTTGCCCCCCGCTTGTAATGTTGGCCTGCACACAATGCTAGTTTCACTCCAGAAGCTGATGAGAAAGGGCACACTTGTAAAACCGCAAAGTGCATACAGAGCAGTTGCTAACGTTAACCTGTGTGTCGTCCAACATTACCAGGGACAGATTGGCCCAAAGGAAATGGCTGTTGAAaccacataaaacacacacacaccagttagagagcgagtgagagagggagtgagagagagagagagagagagagttccaggGAGGGACAAAGCGTCAAGCAAGAGTGTTAGCGCTGAGGAACAAATGATTTTATTCTGACAGGGAATTCAGCCGAGAATACGTTTGATCTGAGGTTTTTGAGAGCTTTTGCCACTGGAATTCCTTATTCTCTCAGAGAATTGAAAGAGAGAAAATAGCCCGAGGATATGAAATCGTATCAGTAAAGGGGTTAGTGAGACTCAAGTCATAAATTAGCAACACCTAAATTTATTGGTACTGTAGATCCAACAGGATGATAATAGGCAGATGTACTGACTTGTGTAGCATGTATAGACTACAAACACATTAGGCAGACAGTGAGGGGTTCTTAAAAAATCTGGAAATGTTTTAAAAGAACCCAGGTTTATTACAGGAGGCACCAGCCTTAACCTCAACCTTatcaaccttaaccctagcttcatgtccacatccaggttcaaccctaaccctagcttcatgtcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1751200 lncRNA downstream 12605 24267322 ~ 24267542 (-) True G1529530
TU1751154 lncRNA downstream 17052 24217812 ~ 24263095 (-) True G1529492
TU1751148 lncRNA downstream 59058 24218863 ~ 24221089 (-) True G1529491
TU1751159 lncRNA downstream 62923 24215801 ~ 24217224 (-) True G1529494
TU1751157 lncRNA downstream 66653 24212608 ~ 24213494 (-) True G1529493
TU1751288 lncRNA upstream 25203 24396635 ~ 24396872 (-) True G1529618
TU1751290 lncRNA upstream 25806 24397238 ~ 24397475 (-) True G1529620
TU1751291 lncRNA upstream 26105 24397537 ~ 24397744 (-) True G1529621
TU1751294 lncRNA upstream 29128 24400560 ~ 24400774 (-) True G1529624
TU1751484 lncRNA upstream 91186 24462618 ~ 24462861 (-) True G1529791
XR_005037574.1 mRNA downstream 53748 24226270 ~ 24226399 (-) True LOC118941245
XM_021571394.2 mRNA downstream 70692 24207344 ~ 24209455 (-) True LOC110495883
XM_021571393.2 mRNA downstream 104164 24167580 ~ 24175983 (-) True LOC110495882
XM_036952332.1 mRNA downstream 207788 24043236 ~ 24072359 (-) False LOC110495873
XM_021571369.2 mRNA downstream 277222 23999571 ~ 24002925 (-) True LOC110495872
XM_021571398.2 mRNA upstream 81798 24453230 ~ 24465553 (-) False LOC110495886
XM_036952398.1 mRNA upstream 106883 24478315 ~ 24519902 (-) False LOC110495885
XM_036952399.1 mRNA upstream 106883 24478315 ~ 24519903 (-) True LOC110495885
XM_021571403.2 mRNA upstream 249245 24620677 ~ 24629312 (-) False LOC110495891
XM_036952402.1 mRNA upstream 254981 24626413 ~ 24629309 (-) True LOC110495891
TU1750685 other downstream 736654 23542606 ~ 23543493 (-) True LOC110495852
TU1750687 other downstream 738891 23481540 ~ 23541256 (-) True LOC110495851
TU1750411 other downstream 1111556 23159558 ~ 23168591 (-) True LOC110495841
TU1749447 other downstream 1394314 22872045 ~ 22885833 (-) True G1528018
TU1748552 other downstream 2017685 22262056 ~ 22262462 (-) True G1527230
TU1751283 other upstream 21943 24393375 ~ 24393684 (-) True G1529613
TU1752728 other upstream 778636 25150068 ~ 25150994 (-) True G1530967
TU1752921 other upstream 1147989 25519421 ~ 25523180 (-) True G1531142
TU1752958 other upstream 1202006 25573438 ~ 25573671 (-) True LOC110495915
TU1753025 other upstream 1325107 25696539 ~ 25708874 (-) True G1531236

Expression Profile