RNA id: XM_036951425.1


Basic Information

Item Value
RNA id XM_036951425.1
length 1731
RNA type mRNA
GC content 0.60
exon number 6
gene id LOC118941069
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 24465538 ~ 24472111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCATAGGCTTAAGGCCAGCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTTCCAGGCCACCTCTCCACCTGCCTtccaggccacctctccagctgACTGCCAGGCCACCTCTCCAACTGCTTTCCAGTTCATCTCTCCAACTGCTTTCCAGTTCATCTCTCCAACTGCTTTCCAGTTCATCTCTCCAACTGCTTTCCAGGCCAGCTCTCCAACTGACCATATCTATCCAagccacctctccagctgccttccCGGCTACCTCTCCAACTGCCTTCCCACCCACCTATCCAGCTACCTTCCAGGACACCTCTACTACTGCCTTCCAGGCCCCTCTCCAACTGCCTCCCAGGCCACCCCTCCAGATGCCTCCCAGGCCTGCTCTCCACCTGCCTtccaggccacctctccagctgACTTCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGGCCACCTCTCCGGCTGACTGCCAGgccacctctccagctgccttccAGGCCACCTCTCCTACTGCCTTCCAGGctacctctccagctgcctcccaGTTCAACTTTCCAACTGCCTTCCAGGTCATCTCTCCAGCTGCCTCCCAGGTCCTCTCTCCAGCTGCCTCCCAGGtcacctctccagctgcctcccaggtcacctctccagctgcctcccaGTTCATCTCTCCAGCTGCCTCCCAGTtcacctctccagctgcctcccaGTTCAACTTTCCAACTGCCTTCCAGGCCAGCTCTCCAGCTGCCTTCCAGGAATGTGACTTTGCACCCTCACTTATCACTGGTCGTCCTGCTCCAGCTGACACACTGGTCTTGCCAGCTGACTTCCAGCTCACCTCTCCAACTGTCTTCCAAGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGTCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCAACTCTCCAACTGCCTTCCAGGCCACCTCTCCACCTGCCTCCCAGGTCTCTTCTACAGCTTATTTCCAGGCCATCTCTCCAACTTCCATCCATGCCCCCTTTCCAGCTGCCTTGCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACAGCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACTTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAACTGCCTTCCAGGCCACCTCTCCAGTCACCTCACAGGAAAACTCCCCACATTTATTcaacgtcgccatgacatcgcctacaagtgtgatcggAGAGAAGCCGTCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1751329 lncRNA upstream 998 24464075 ~ 24464540 (+) True G1529657
TU1751282 lncRNA upstream 72892 24392403 ~ 24392646 (+) True G1529612
TU1751268 lncRNA upstream 84870 24380449 ~ 24380668 (+) True G1529598
TU1751266 lncRNA upstream 87595 24377719 ~ 24377943 (+) True G1529596
TU1751263 lncRNA upstream 88203 24377116 ~ 24377335 (+) True G1529593
TU1751374 lncRNA downstream 50892 24523003 ~ 24523231 (+) True LOC110495887
TU1751384 lncRNA downstream 66818 24538929 ~ 24539269 (+) True G1529700
TU1751375 lncRNA downstream 68752 24540863 ~ 24541985 (+) False G1529693
TU1751376 lncRNA downstream 68752 24540863 ~ 24541985 (+) False G1529693
TU1751377 lncRNA downstream 68752 24540863 ~ 24541985 (+) True G1529693
XM_036952375.1 mRNA upstream 202432 24222829 ~ 24263106 (+) False LOC110495884
XM_036952376.1 mRNA upstream 202432 24222829 ~ 24263106 (+) False LOC110495884
XM_036952377.1 mRNA upstream 202432 24222829 ~ 24263106 (+) False LOC110495884
XM_036952378.1 mRNA upstream 202432 24222829 ~ 24263106 (+) False LOC110495884
XM_036952379.1 mRNA upstream 202432 24222829 ~ 24263106 (+) False LOC110495884
XM_021571400.2 mRNA downstream 66 24472177 ~ 24477037 (+) True LOC110495888
XM_036952401.1 mRNA downstream 48586 24520697 ~ 24525649 (+) False LOC110495887
XM_021571401.2 mRNA downstream 84126 24556237 ~ 24574771 (+) True LOC110495890
LOC110495892 mRNA downstream 142132 24614243 ~ 24626367 (+) True LOC110495892
XM_021571408.2 mRNA downstream 603589 25075700 ~ 25097350 (+) False LOC110495894
TU1749630 other upstream 1304247 23158833 ~ 23161291 (+) True G1528194
TU1748777 other upstream 1854086 22599413 ~ 22611452 (+) False LOC110497098
TU1748763 other upstream 1854086 22599497 ~ 22611452 (+) True LOC110497098
TU1746485 other upstream 3708126 20756691 ~ 20757412 (+) True G1525320
TU1745224 other upstream 3981825 20473360 ~ 20483713 (+) True G1524181
TU1751373 other downstream 48624 24520735 ~ 24522946 (+) False LOC110495887
TU1752092 other downstream 532650 25004761 ~ 25005609 (+) True G1530367
TU1752290 other downstream 676872 25148983 ~ 25149468 (+) False LOC110495895
TU1752288 other downstream 682622 25154733 ~ 25155895 (+) True LOC110495895
TU1752534 other downstream 1094360 25566471 ~ 25571346 (+) True G1530785

Expression Profile