RNA id: XM_021571416.2


Basic Information

Item Value
RNA id XM_021571416.2
length 2603
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110495899
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25204583 ~ 25208443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGACTGAAACACACGAAGAGACCTGGCACAGATATGTGGCTACTGTCTTTCATTTTACCAATTTTGAGGCTGTATTTAGTGGGAGTTAAAGTTCTTCTGTATCAACTGTTCAACAAGTCATTTACGTTACCAGGTACTCAGTAATGAGTGAAGGCACCTAAAAGGATCATTGTCAAAGGAACAAAATGGAGGCCAAAGGTGCTTCCTCATCTAATCTCCACCTTGTTGCACATCCAAGGGCAAAAAGTAaagtatggaggtattttggctTTGACACCGATGCAGACGGGTGTATACTACACTGGAGGAGGATCTACTGTCGCATATGTATGACTCAGATAGCATATTCCGGGAACACCTCCAATCTCTCGTACCACCTGGAGAAGAACCACCCAGTTGAGTTCTGTGAGTTTGTGAAGAGCAACACGGAGCAGATGCGTGAGGCGGTCGCAACGGCCTACTCCAAGATAAAGACTGAACCTATGCAGCAGCAATGTCAGGAAGCCATCCTGAAGCAGAGCCCAGCGTTTGAAAATATCAACCGACGGCATAATGATCTGACGTCTGCGATCATCAGCTTTGTCTGTGAAGGGATGTACCCTGTGTCTGTGGTGGAAGAACCCACCTTTCAGGCCCTCTTAAGGACTGCAGATCCAAGATACTTGCCCCCTAGCAGAATCGACGTAGCAATGAAGGCCCTACCACAGAGGTACAATCAGATCCGAGATGCAGTGCTGGGTGAGGTGGCAGGGGTGGTGAACTGTGGTGTCTCAACTGACCTTTGGCAAAGCCAAACCCAGAACAGGACCTACATCTCCCTGTCCATGCACTCTCTGAACCAAAACGGACTAGGTTCTGGTTTCTCCATGAGTACCAAATGCCTGAAAACTTTTGAAGTTCCAGAGGACAATACCGCTGAGAATATTACCAGAGCATTGTACGAAGCATTTGTCGAATGGGGGATAACTCACAAAGTCAACGGTGCCACCACTAACGGGTCATTGGACATTGTGAAAGCTTGCTCTCTTCTGGATCTATCCGTGCAGATGCCTTGCCTTGGCCACACTATAAATCGAGGGATGGATGAGGCCTTTCAGCTGCCCAGAATTGACTGCTTTTTGGGACGTTGCCGCAAACTTGTTGATTATTTCCAACAGTCCGTGATGGCTATGTATTTGCTGCGAGAGAAGCAGAGGCAGCAAGGCTTAGCCCAGTGTGTCCTCATCAGAGACAGGGTCCGATCCTGGGTGACCACACTGACTATGCTCCAGCGCCTGAAAGAGCAGCAGGCCATTATCAGTGTGGTACTCATGGAGGACAGTGACAACCATCAGCTGAGTTTCAAGGACAGTGAATGGAACATGGTTGAGGGCTTGATTGGAGTTCTGCAACCTTTCAAACTGGTAGCTGACATGATAACAGACTGTAGGTATCCGACCATTAGTATGGTGAGGCCTGTCCTTCACATGCTGCTGAACACAACCCTCAAGGCCAAAGAAGGGGACGCAAAAGAGGTTGGCATGGCCAAAGAGGTAATCTCCAAGGTGTTGTCCAGCACCTACCCGCAGACGTCTGAGATTGCAATGTTTCTCAACGTTGCCACTTTCCTGGATCCCCGTTACAAGAGGCTTCCTTTCCTGTCCCCCCACGACCGCTCCCAAGTGGAGAGTAAAGTCATTGAGGAGGCCAAAGCCATTCTTGAGAAACAGAGGAATGAGAATGTGGTCACAGATGAATTGGCTCCTCTTTCTGATGAGCCACCCAACAAAAAACAGACTCTTGACAAACACTCTCCTTCATGTAGCAATGCAGGCAACCCTTTGGCTGTGATATTTTGCCAGTCAGGCAATGACGAGAACCAAGAAGAGCTACACGCTCAGGTCGTGGAAGAGCTGAGCAACTTCAAATCCCAGAAGATCCTGGGTCTCAACGAAGACCCTCTCCATTGGTGGTCGGACCGTATGGGCTTATTCCCTACTCTCCCCAAGGTGCTCCAGAAGTACTGGTGTGTCCCCGCCACTAGTGTCCCCTCCCACAGACTGTTCAGTTCCTCAGGGACTTTCTTCTGTGGGAAGAGGAACCGCCTCACCCCGGCACATGTAGACCAACAGGTGTTTCTCTATGAAAACTCACGGCGCTGCAATGAGGCTGAACCTATTGAGGATGACTCAGGGGAATGGGGCTTGGGACTGGAGCAGGACTCTGGGTCAGACCATGGAATAACTGGGCAGGCCACTGCCCACTACCAAACAGTTACAATACCCTAATCCTAAAGGAAATACTTATCAAAATAATATATACTGAGGGCATTTAGTTGTTTACTAGTAAAAAAGGATTTATGTGAGTGTAACATCTGGTCAATTTTCTATTTCTGATCATGCTGCAATTTTATTTAATTAACTATTTGATGTAGGGCTAAATGGCTTTTTTTTGTCCCAATGTTCAAGTAATTTCTGAGTCATTGTTTGCTTTGCTCTTTGAAGTCCTTGGACTGTTTTAGATGTCTTTACAGTACGTTTGAGATTAGCTTTGATGTGCCAAGCTTTGTTATCTGTACTGAACTCTCAGAAGAACATAAAGTATATCCTATATAACTTGAA

Function

GO: NA

KEGG:

id description
K24637 ZBED1; zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1752321 lncRNA upstream 25539 25178682 ~ 25179044 (+) True G1530591
TU1752320 lncRNA upstream 26710 25177440 ~ 25177873 (+) True G1530590
TU1752317 lncRNA upstream 31019 25173353 ~ 25173564 (+) True G1530587
TU1752312 lncRNA upstream 39167 25165127 ~ 25165416 (+) True G1530582
TU1752308 lncRNA upstream 45306 25159073 ~ 25159277 (+) True G1530578
TU1752359 lncRNA downstream 46449 25254892 ~ 25255132 (+) True G1530626
TU1752360 lncRNA downstream 46794 25255237 ~ 25255779 (+) True G1530627
TU1752361 lncRNA downstream 47924 25256367 ~ 25256594 (+) True G1530628
TU1752299 lncRNA downstream 52583 25261026 ~ 25263032 (+) True G1530569
TU1752397 lncRNA downstream 123549 25331992 ~ 25393264 (+) True G1530662
XM_021571410.2 mRNA upstream 47245 25133270 ~ 25157338 (+) False LOC110495895
XM_036952405.1 mRNA upstream 50877 25133210 ~ 25153706 (+) False LOC110495895
XM_021571408.2 mRNA upstream 107233 25075700 ~ 25097350 (+) False LOC110495894
XM_021571420.2 mRNA downstream 55552 25263995 ~ 25272511 (+) False LOC110495902
XM_036952410.1 mRNA downstream 55861 25264304 ~ 25272511 (+) False LOC110495902
XM_036952409.1 mRNA downstream 55912 25264355 ~ 25271017 (+) False LOC110495902
XM_021571419.2 mRNA downstream 55916 25264359 ~ 25272511 (+) False LOC110495902
XM_021571421.2 mRNA downstream 56013 25264456 ~ 25272511 (+) False LOC110495902
TU1752288 other upstream 48688 25154733 ~ 25155895 (+) True LOC110495895
TU1752290 other upstream 55115 25148983 ~ 25149468 (+) False LOC110495895
TU1752092 other upstream 198974 25004761 ~ 25005609 (+) True G1530367
TU1751373 other upstream 681637 24520735 ~ 24522946 (+) False LOC110495887
TU1749630 other upstream 2043292 23158833 ~ 23161291 (+) True G1528194
TU1752534 other downstream 358028 25566471 ~ 25571346 (+) True G1530785
TU1752680 other downstream 630063 25838506 ~ 25839735 (+) False G1530923
TU1752681 other downstream 630063 25838506 ~ 25839735 (+) False G1530923
TU1753186 other downstream 725737 25934180 ~ 25934958 (+) False LOC110496782
TU1753187 other downstream 725737 25934180 ~ 25943678 (+) True LOC110496782

Expression Profile