RNA id: XM_036952411.1


Basic Information

Item Value
RNA id XM_036952411.1
length 2207
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110495902
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25263995 ~ 25272511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGTCTATCCACAATCTGTGTCAGTAAAGAAAGGTACAGGTCAGGACAAAAATGCCCGGCCCCTGTCCTTGTCTGGCCATGTTGGATTTGacagcctacctcaccagctgGTCAACAAATCAACATGTCAAGGTTTCTGCTTCAATATCCTCTGTATTGGCGAAACTGGTATTGGCAAATCCACCCTAATGGACACACTGTTCAACACTAACTTTGAGAACTTTGAGTCGTCTCACTTCGAGCCCAAGGTGAAGCTGCGAGCGCAGACCTATGACCTGCAGGAGAGCAACGTGCGACTCAAGCTGACCATCGTCAACACAGTGGGCTTTGGGGACCAGATGAACAAgcaggagagCTACCAGCATGTTGTGGACTACATTGACACCCAGTTCGAGTCGTATCTACAGGAGGAGTTGAAGATCAAGCGGTCTCTTCACAACTACCACGACTCCCGTATCCATGCCTGTCTCTACTTCATCGCCCCTTCAGGACACTCTCTCAAGTCCCTAGACCTGGTCACCATGAAGAAACTGGACAGCAAGGTCAACATCATTCCTGTCATCGCCAAAGCAGACACCATCTCCAAGAGCGAGCTCCACAAGTTTAAGATCAAGATCATGAGTGAGTTGGTCAGTAACGGTGTCCAGATCTACCAGTTCCCTACCGACGACGAGACAGTCTCCAAGATCAACACTGCCATGAATGGTATCCTGCCTTTTGCTGTTGTGGGGAGCTCCGAGGAGGTGAAGATTGGAAATAAAATGGTCAAAGCTCGGCAGTATCCCTGGGGTGTGGTGCAAGTGGAGAATGAGAACCACTGTGACTTTGTGAAGCTGAGGGAGATGCTGATCTGTGTGAACATGGAGGACCTGAGGGAGCAGACCCACACGCGCCACTACGAGCTCTACCGCCGCTGCAAACTGGAGGAGATGGGATTCACGGACACAAACCCAGAGAGCAAGCCAGTCAGCCTGCAGGAGACCTATGAAGCCAAGCGTCACGAGTTCCTGGGAGACTTGCagcggagagaggaggagatgaggcaGATGTTTGTCCAGAGAGTCAAGGAAAAGGAGACTGAGCTGAAGGAAGCCGAGCGAGAgTTGCAAGGTAAGTTTGAGCAGCTGAAGAGACTGCACTCAGAGGAGAAGAGCAAGCTGGATGAGAAGAGAAGGTCTCTGGAGGACGAGATCAACACCTTCAGCAAGAAGAAAGCAGCTGCCGAGCTGCTCCAAGGCCAGTCCTTCAACACTAACGCCAACCTCAAGAAGGACAAAGACCGTAAAAACTCTGGGTTCATGTGAAGAAATAAATGGACAAAGACCCCCTCACATCAGTCAGaagacaaataaatacaaaatggaaTACATTCACCGATAGTCGTCGTTGTTTGCCTTATTAGTCAAATCACAAATGTTAGTTAAAGTTAGTTAAGCCAGAGTATTTGATAAGGCTCTTTTTAAGAATGGTAACCCTTTTGTATTACTTTACTTTTCACTTCTACAGCTAGAGGGCGCCAAATGATCAAGGTCATCCTTTGAAAATACTGTCCTTTACACCAAACAGAAATACAATTTGTTTGACATTCAAGATGTATTTAATTGTCCAATCTCGGAATTGGTTTTCTTACCGGGTTGTCTTGAGTATTCACTTTAAATGTGATATCAGATAATGTTTTGTAAACCTTCATTTAATTCTGCAGATAGCAGAATATATATTTGCATGTATTTTTAAATATGCTATTCACCAGTAGTGTGTGTTTTATATAGCTTGATATTTATTCCATGCATTATTATTGTAGACTCGTGGGTTTCTGGATGGATTCCATGTTTAGAAATACCTAGCTCTGATCCAGGACATTAGTACACGTTCCTCACCTCACATTAGTGGAGGAACGCGTACCAACGACCCGGACCAGAGCTAAGTTATACCCACCGCACGTGTTACATTCCAATTACTGAGGTATTCTTGATATGACTTTTTAAAAACACTTATTTTATGCCTTTATGTGCCTTACTAGTATTTTATTCAAATGCTAAAGAATGAAGCAGCTGCTGACATGGGAATTAATTTTTGAAGAGTGaaaccatgttttttttgttgctcaaTGATCTATCTAAATGGAACACTAGGTCAAGTGGTTTTGACTTTGTAAAGAACTGTCGTGCGTGTGGAATGATAATTAccaaactccccccccccccc

Function

GO: NA

KEGG:

id description
K16940 SEPT10; septin 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1752299 lncRNA upstream 2099 25261026 ~ 25263032 (+) True G1530569
TU1752361 lncRNA upstream 8537 25256367 ~ 25256594 (+) True G1530628
TU1752360 lncRNA upstream 9352 25255237 ~ 25255779 (+) True G1530627
TU1752359 lncRNA upstream 9999 25254892 ~ 25255132 (+) True G1530626
TU1752321 lncRNA upstream 86087 25178682 ~ 25179044 (+) True G1530591
TU1752397 lncRNA downstream 59482 25331992 ~ 25393264 (+) True G1530662
TU1752449 lncRNA downstream 124217 25396727 ~ 25396949 (+) True G1530712
TU1752455 lncRNA downstream 181338 25453848 ~ 25456024 (+) True G1530718
TU1752486 lncRNA downstream 219042 25491552 ~ 25493871 (+) True G1530749
TU1752498 lncRNA downstream 247020 25519530 ~ 25523293 (+) True G1530761
XM_036952408.1 mRNA upstream 35310 25197244 ~ 25229821 (+) False dhrsx
XM_036952407.1 mRNA upstream 35310 25204546 ~ 25229821 (+) True dhrsx
XM_021571416.2 mRNA upstream 56688 25204583 ~ 25208443 (+) True LOC110495899
XM_021571410.2 mRNA upstream 107793 25133270 ~ 25157338 (+) False LOC110495895
XM_036952405.1 mRNA upstream 111425 25133210 ~ 25153706 (+) False LOC110495895
XM_021571428.2 mRNA downstream 125416 25397926 ~ 25403564 (+) True LOC110495908
XM_021571429.2 mRNA downstream 133103 25405613 ~ 25407437 (+) True LOC110495909
XM_021571443.2 mRNA downstream 586486 25858996 ~ 25884157 (+) True sh3bp4a
XM_036952422.1 mRNA downstream 620807 25893317 ~ 25896446 (+) False arl4ca
XM_036952423.1 mRNA downstream 620814 25893324 ~ 25896446 (+) True arl4ca
TU1752288 other upstream 109236 25154733 ~ 25155895 (+) True LOC110495895
TU1752290 other upstream 115663 25148983 ~ 25149468 (+) False LOC110495895
TU1752092 other upstream 259522 25004761 ~ 25005609 (+) True G1530367
TU1751373 other upstream 742185 24520735 ~ 24522946 (+) False LOC110495887
TU1749630 other upstream 2103840 23158833 ~ 23161291 (+) True G1528194
TU1752534 other downstream 293961 25566471 ~ 25571346 (+) True G1530785
TU1752680 other downstream 565996 25838506 ~ 25839735 (+) False G1530923
TU1752681 other downstream 565996 25838506 ~ 25839735 (+) False G1530923
TU1753186 other downstream 661670 25934180 ~ 25934958 (+) False LOC110496782
TU1753187 other downstream 661670 25934180 ~ 25943678 (+) True LOC110496782

Expression Profile