RNA id: XM_036952418.1


Basic Information

Item Value
RNA id XM_036952418.1
length 6097
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110495916
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25550063 ~ 25630757 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCTGGAATAACTGGATTGTGAGGGGGGCTGTGGGCTCAGGTTGAGAGCGCGCTTTAGCTGCTCGTGCCACAAGAGATTTGCAAAGAAGCGTTAGCGAAAAAGCGGCAATATGTTTCAATCTCGTTATTATTTCCCCCTCTATTTTTTTCGACTAATGTTAACTTTGTATCGAAACGAATGATGACATGGACTTTGCATGATGAGGAAGGCATTTAATAACGGATGTCAACAGCATTTTACGCACAGGTTAAACACCGCGGAAGGGATGCACTTGCTGCCACTTTTTGACGAATGTCAATTTAGCATTGCTCATTTGTTGGAAAACTATATTTCATTGTGATACGGCGTTCAGTTGCATGCAATGGCATCGACATAATCGTTGTCAGTATTTGTTTGTAGGCTTAATTATTTGAACCGCCTGACAAACATCAACGTCATTGATGTAGGACAAGAGGACTGATGAATCGGTGCATTGCTTGATCCATTCTTGAAAACAGTTCCTTCTGGACATGATCTGGGGATGAGTAAATAAAGGTTATTAGACAACCATTACCGGGTTTATGTAGATCGGCTCGGTCTACACTTAACATAGAATAATTCGGCTATACCACAGGCTACTAGTAAAAGCCTCAACCATGTATGCTGGACGGAAAAGAAGAAAACCGGTGCAAAAAGGCATCGAAGTGAAAGACCAAAAagagaaacagacagctccGTCTGAAGGGACCAAGTCTAACCCATCAAAGCGCCACCGGGACCGTCTGAACTCTGAGTTAGACCGTCTGGCCAGTCTACTGCCCTTCCCAGAAGAGGTCACCTCCAGCTTGGATAAACTCTCTATTTTACGGCTCAGCGTGAGCTACCTGAGGACCAAGAACTTCTTCTCagTTGCCCTGAAGACCCACGCTTGCAATGGTTTGAAGGCCAACAGTGGTAACCATGACAACAGCAAGACAACAGGATTGGTGGATGGCTGGATGCCCGAGGGTGAACTCCTATTGCAGGCCCTTAATGGTTTTGTCCTGGTCATCACTGCAGAGGGGGTCATATTCTACTCCTCTCACACCATTCAAGATTACCTGGGATTCCACCAAACAGACGTGATGCACCAGAGTGTGTTTGATCTGATCCATACTGAGGACCAGCAGGAGTTTAGGAGGAACCTCCACTGGGCTCTCAACCCCCCGGCCGTGCCCCAGCAGGTGGAGTCACCCCCAGATGGAAAGCCAGTCCCCAGCTCATCCCTGGTGACCTATAACCCCGATCAGCTGCCTCCAGAGAACTCCTCCTTCCTGGAGAGGAACTTCGTCTGTCGCTTCCGCTGTCTCCTTGACAATTCCTCTGGCTTCCTGGCCCTGACCCTCCAGGGCCGTCTGAAGTTCCTGCATGGCCAGAACTGCCACCTGGATGACGGCTGCAACGTGCCCCCCCAGCTGGCCCTGTTTGCCATCGCTACCCCCCTCCAGCCTCCATCCATCCTGGAGATCAGGACCAAGAACATGATCTTCAGGACCAAACACAAGCTGGACTTCACCCCCATGGCCTGCGATGCCAAGGGGAAGATCGTGCTGGGCTACACTGAGGCTGAGCTCCGGGTTCGAGGCTCTGGATACCAGTTTATCCATGCAGCTGATATGCTCTACTGTGCTGAGAACCACGTCCGCATGATCAAGACAGGAGAGAGCGGGCTGACGGTGTTCAGACTGCTCACTAAGGATAACCGTTGGAGGTGGGTCCAAGCCAACGCCAGACTGGTCTACAAGAACGGCAAGCCTGACTACATTATCGCCACCCAGAGGCCCCTGGTggaggaggagggaggagagcacCTGAGGAAGCGTTCCATGCACCTCCCTTTCACCTTCGCCACGGGCGAGGCCCTTCTCTACCAGAGTAGCTACCCCATCCACGGCCTCACCGACTCACTCCAGACTAAAGGCAAGACCAAGTCCAAGAAGGCCAAGCTGGACAAGAACTCGTCGAAGGATCACGGTGGACTGGACCCCAGCTCCCTGCTAGGGGCATTGATGCGGCAGGATGAGTCCGTGTACGTGTGCCAACCAGCCGTCGAGCCCAAGATGTCCTTCCACAGTAGTCTGTTTAGTGAgcgaggggagggggaagggcaGAGCAGTGGAGGCTATAGCGGTGGCCCTCTGGGTGGTGGTGTGGGAAAGAGCTGGAGCTCCGTGCCCAACGTGGTCACCACCTCCTCCACTGGCCCCAACGGGGAGCCTCCATCCAGCTTCGACCCACTACTCGCCACCCTGGACTCACTATCTCTGGAGGGGGACGAGACATGCTCTAACAGCGAGCTGTTCTCTGCTCTGGAGAACCTGGGTCTGAACGCAGAGGATCTGGAGCTACTGCTGCTGGATGAGAGGATGATCAGAGTGGAGATGGATCCGGACTACATCCCCTCGCTCAACGACCTGCTCACCAACAACGAGATCCTCGCCTACATCCACGACTCGCTGGAGAACAAGACCGAGGAGGGCCAGGGTGGGGACAGTCACGTGTCCATACCACCAACCACAACCCATCCCCCTGGCCCTATCCTTAATTCTACCCTTATCCCTAACCTTTATAACCAAGCCACCCCCGCTATGCATATCTCTACCCTCCACCCCCAGGCTATTAACCCTCCTATCCCCCAACCCACGTTACCCCCTCACAGACTACCAAAACAGCCACCCATAGTGCAGCTCTCCCAGCAGATGCAGCAGCACCTCAACTTAGTAAAACCCGTTCTGGCAAAATACCCCTGGCCCCCGACACAAACTGACGTCCCCACGCCAAGCCAGCCAGACACACTGCAGCACACAAACTCACTAACCGTGGTCGATAATGGTCACTGGCTTCCCCAGCAGGAGCATCTGCATGCGGGGCTGGACGACCACTGCCACAGCCTTCACCCCCTGGTCAACGGTAAGACATCCCAGCTGGGGCCTCAAGGGTCCGGGCAGCTCAAACACCACCAGCACCAGAACATCATCCATCTTCAGAGCCAGTGGCAGCAGCAGAACCAGCACCTACAGGTCCAGCTTCTGCCTCAGTGCCATTTCAAACAGCAGAAGGCAAGTAGCAACAGCGGTGCCGCTCTCAACGGGGTGCACCCTGATCCCGATTGTCAGAGGTACGGCTACGACGACCAGTTGGAACTGACCGCTAACGGAGCCTGCACCGTCTCCTACACCAACGGGCGCGCGGACACCCTCTCACACGCTACAGGAGGTGAGGTCACTCTCACGGATTACGGTACGGGTGCTTCGACTACCGTGGGCATGGTGATGAACTGGGGTACGGTGGGGGGCACAGGTCACTACCAGGGACAAGGAGGGGTGACTGCTAACCCCTCAGACCGTCTGGAGCATCACAAACAACATTCTCCACAGGTCCCATCCGCCTACTTTCACCGCCAGTACCCCACCACACAGAACTCCTTAGATTACATCCTGGGGCTGTCACAGCCTCAACACACCATGCCTTCTCTGGGCGCCTACGGCATTTTGAATCGCCCCGCTTCCCAAGATGCCACTCACCGCAAGATGGAGAGCGGCTGCATCCTCAACGACACCAATGTGGCTCACACAGGGAGCTGTCTACTGCCCAATGTGAACGGCCAGACAGCCAGCGACAGTCTCCAACCCCAGCCCGACGCCCTACAGACCCTGCCCACCCTTCGAGACCCACAGACTACTGGCTTCTACCtctgagatgggggggggggggggtcagtgcaAAGAGAGACCATTGGACCATTTTGTCAGGGGGCACAAAAAAATTAACAGAGGAGGAGAATTTAAACTGAACTGTGGATGTTACGACTTTCTATGTAACATTCTCTCCATTTCATTTGTGTACGACGGACTCAGGACTCAGTGAAAGAGCTCAGCATAGTGTCTCTCTGCACTCTGACAGTAGTTTCCccactggcacacagctcagggGAAACCAAATGCATCTTCTTATGTTACACATTTTTTATGGAGGGTATGGTTGAGAGAGCGGCGATTTCTTCACCACTGTGAATTTCATTGTTTTTCTTTATGGGTGTACAAAACACAGTTTCGGACAAAGATGATTAACAAGACTGTGATAAGAGACGTGTTTTGCTACAGTACTGCGCTTCAGTACAGTATAACTTGTTAAAGGAGGGAAAGTGAATGTGGGTATGGAAAGGATGGAGAAGGATTGATATGGAGATTAATATTCATTATGAAGAATGATGAgacatgattgattgattgatttgaaggAGCTGGATGTCTGAAATTATTGTGAGGTAGATTTACAAATGTTCTGTGTTATGTTTTGTTGTGTCATCTGCCCATAGCGAGGAAGAGGAATTGATTCAGGCTTTGGTGATCTACGTGTTGGTAAAAGAGTATATAGGTTGTCCTCTGACGGGTTATTGAGATTGGATATGTGAAACAGATCCCATATTATGGTCAAATGGTATCTGAATatgaagagggagagcagagggagagcagATCGGAGGAAGGGATGACCGTTTTGGGGTTTTGTTTACTTCCATGCTGCATTTTAGCCTGGAAGAAGTTTACGTTACCAGTGCAATGatgttgtgtatttatttatttaaatggcaCTCAAATCAACCGAAGCATTTTCTTCTTTTCTTGACTGGCTACAGTGTGAAATCACTCATTACATCAAGTCCCGTAATACAGCAGGAGATGGCTTACATTCAGAAGTAAACAAGCACATTCCAGATCCATCATTCCTCATTGAAAAGCTTTGAGAAAAATATACATTTGGATTCAAGTTGATTTCCTGAATTGAAATGAAGTTGAGCTAAAAAAAACAAACTGTATTCGCTGCCGAGGGCAAGAGGAACGAGAACGGCAGTTTCTGTCGTGACGAGAAAGGTCGTTTCAGTGGGCCTCCTCTCTTACAGGGCCCCAGGTGATTCCGTCATGGTCATCTATCACAGTGGATCTCacacctctcctcggggacccccagaAGATTCGCAATTCTGTTGTCGCCCTGAACGAGCACACCTGATTCActtagtcaagggcttgatgattagttgacgaGTTGAATCAGCTGGGCTAGCTTTAGAATAGGTCAAAAGCGTGGAAACACTGATGTATCGCACTGAAGACCCTGTTCCATGAGGATTGACTTGGTCACACGCAGACTCGCGGGCATTGATCCAAATGAGAGGACAAGTCTTTTTAAAGAGATTCTGTATTGAAAAGTTGCAATGTTGAATGTGTCGTGTATATTGTAAAAGAGTTGTAAAAATATCCTATTTGCAGTATTTCGTTATTAAAAAGTGCTGGAAAATAGTTTTTATTAATATTGGTAGCGTTAGAATTATCTCCATCCAAAATGGCACtatattctctacatagtgctatacttttaaccagagccctatggaccctgatcaaaagtagtgcactatatagggaacgggtgccatttgggatgtaacttATTACATAAATGTCACAAACAAACGCATTTACAGACTTGCCTCTCTTTATATTTGTTTGTCTTTTTTTGTATACAGACATTTTCTTATATAAAATAGATTTATTTAAATCAACCAGGAgatgtatgtaaaaaaaataaaaaaagcaagGTGACAATCAATAACAACAactgctttttaaaaaaaaatgtgtaaataGTAAGGTATTTTTTATGACATTTGTTGCAAGCACTACTTTAAAAGCACTGGTCCTCACAAGCCATTTTTCTCTAGCACAGAAAGTAGGCTTGTAGAAAATAATTTTGGACTATTATTTTGACTACAATACCTACAGTTCTGTGTTTTATTTCAAAGTCATGTTTGGAGAACTTTTTATGACTTTTACTCTCAAGGATATGGTGCCATAGTGGTGACAAACTGCAGACTCACATCCCAGATTTTTATGTTTAAAGATACAATGGTGTCAATGTTCTTTTTTTTATCACGTTGAATTTATTGAAtttattttgatattttaacACACACAGTTATTGTAgatgtcaaaaaaaaaaaaaaaagcagttcAAATGTTAAAATATACTATTTGATCCTGGAAATAAAGGATTTGTGCAATCACAGTTCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1752891 lncRNA downstream 19450 25528360 ~ 25530613 (-) True LOC110495912
TU1752926 lncRNA downstream 24878 25521396 ~ 25525185 (-) True G1531145
TU1752912 lncRNA downstream 61155 25488696 ~ 25488908 (-) True G1531134
TU1752910 lncRNA downstream 62013 25487820 ~ 25488050 (-) True G1531132
TU1752839 lncRNA downstream 69481 25469625 ~ 25480582 (-) True G1531063
TU1753030 lncRNA upstream 87268 25718025 ~ 25718336 (-) True G1531240
TU1753011 lncRNA upstream 104692 25735449 ~ 25736981 (-) True G1531224
TU1753057 lncRNA upstream 141551 25772308 ~ 25772523 (-) True G1531266
TU1753059 lncRNA upstream 160740 25791497 ~ 25804760 (-) True G1531268
TU1753069 lncRNA upstream 187687 25818444 ~ 25818697 (-) True G1531278
XR_005037413.1 mRNA downstream 19487 25504882 ~ 25530576 (-) False LOC110495912
XR_005037414.1 mRNA downstream 19487 25505289 ~ 25530576 (-) False LOC110495912
XM_021571434.2 mRNA downstream 19499 25504882 ~ 25530564 (-) False LOC110495912
XM_021571433.2 mRNA downstream 19502 25504882 ~ 25530561 (-) False LOC110495912
XM_021571432.2 mRNA downstream 19508 25504882 ~ 25530555 (-) False LOC110495912
XM_021571435.2 mRNA upstream 4068 25634825 ~ 25717780 (-) True LOC110495914
XM_021571439.2 mRNA upstream 113616 25744373 ~ 25770731 (-) False LOC110495917
XM_021571438.2 mRNA upstream 113617 25744374 ~ 25770731 (-) True LOC110495917
XM_036952421.1 mRNA upstream 143909 25774666 ~ 25808289 (-) True LOC110495918
XM_021571442.2 mRNA upstream 207747 25838504 ~ 25840385 (-) True s100b
TU1752921 other downstream 26883 25519421 ~ 25523180 (-) True G1531142
TU1752728 other downstream 399069 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 1156379 24393375 ~ 24393684 (-) True G1529613
TU1751211 other downstream 1266069 24283591 ~ 24283994 (-) True LOC110497104
TU1751209 other downstream 1269617 24279738 ~ 24280446 (-) False LOC110497104
TU1753025 other upstream 65782 25696539 ~ 25708874 (-) True G1531236
TU1755359 other upstream 1556865 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 1556865 27187622 ~ 27189549 (-) True G1533378
TU1755743 other upstream 2123417 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 2230289 27861046 ~ 27914520 (-) True LOC110496785

Expression Profile