RNA id: TU1752958



Basic Information


Item Value
RNA id TU1752958
length 234
RNA type TUCP
GC content 0.58
exon number 1
gene id LOC110495915
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25571910 ~ 25574981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCAAGGTGATGACGGAGAGCGGGTGCAGCAAAGGCTTTGGCTttgtttccctctcctccccagagGAGGCCACCAAGGCTGTGACGGAGATGAATGGCCGTATTGTGGGAACCAAGCCGCTTTACGTGGCCCTGGCTCAGAGCAAGGAACAGCGGCAACAATACCTGGCAGACCGGTACAAGCAGAGGATGGTCAGTGTCATGGCAGTGCCCAACCCCATCATCAACTCCTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1752949 lncRNA downstream 12925 25560157 ~ 25560513 (-) True G1531165
TU1752891 lncRNA downstream 42825 25528360 ~ 25530613 (-) True LOC110495912
TU1752926 lncRNA downstream 48253 25521396 ~ 25525185 (-) True G1531145
TU1752912 lncRNA downstream 84530 25488696 ~ 25488908 (-) True G1531134
TU1752910 lncRNA downstream 85388 25487820 ~ 25488050 (-) True G1531132
TU1752991 lncRNA upstream 42725 25616396 ~ 25616717 (-) True G1531206
TU1752993 lncRNA upstream 46156 25619827 ~ 25620026 (-) True G1531208
TU1753030 lncRNA upstream 144354 25718025 ~ 25718336 (-) True G1531240
TU1753011 lncRNA upstream 161778 25735449 ~ 25736981 (-) True G1531224
TU1753057 lncRNA upstream 198637 25772308 ~ 25772523 (-) True G1531266
XR_005037413.1 mRNA downstream 42862 25504882 ~ 25530576 (-) False LOC110495912
XR_005037414.1 mRNA downstream 42862 25505289 ~ 25530576 (-) False LOC110495912
XM_021571434.2 mRNA downstream 42874 25504882 ~ 25530564 (-) False LOC110495912
XM_021571433.2 mRNA downstream 42877 25504882 ~ 25530561 (-) False LOC110495912
XM_021571432.2 mRNA downstream 42883 25504882 ~ 25530555 (-) False LOC110495912
XM_021571435.2 mRNA upstream 61154 25634825 ~ 25717780 (-) True LOC110495914
XM_021571439.2 mRNA upstream 170702 25744373 ~ 25770731 (-) False LOC110495917
XM_021571438.2 mRNA upstream 170703 25744374 ~ 25770731 (-) True LOC110495917
XM_036952421.1 mRNA upstream 200995 25774666 ~ 25808289 (-) True LOC110495918
XM_021571442.2 mRNA upstream 264833 25838504 ~ 25840385 (-) True s100b
TU1752921 other downstream 50258 25519421 ~ 25523180 (-) True G1531142
TU1752728 other downstream 422444 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 1179754 24393375 ~ 24393684 (-) True G1529613
TU1751211 other downstream 1289444 24283591 ~ 24283994 (-) True LOC110497104
TU1751209 other downstream 1292992 24279738 ~ 24280446 (-) False LOC110497104
TU1753025 other upstream 122868 25696539 ~ 25708874 (-) True G1531236
TU1755359 other upstream 1613951 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 1613951 27187622 ~ 27189549 (-) True G1533378
TU1755743 other upstream 2180503 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 2287375 27861046 ~ 27914520 (-) True LOC110496785

Expression Profile