RNA id: XM_036952421.1


Basic Information

Item Value
RNA id XM_036952421.1
length 5841
RNA type mRNA
GC content 0.50
exon number 23
gene id LOC110495918
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25774666 ~ 25808289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacgcgcgcgcgcgcgcgcttGCAAATGAAGCAGGTGAGATGCTCACTGCGTGCTCAACATTCTGATTGATTGCCCTTTGGAGTCGCGACGATGCTAGTGCGTCGGAACGCACCAGAAGTAACCAGCAATCCTTGATGAAGAACTTAAAGCTATTGTCCTTATAAATATAAATAGCGACTTTTGTTGTTTTTGAAACAACGTCTTTAAGATGATATTTGTGAGAAGGTCTCTACGATAGAGCTGGAAAGCCACAGGAACATTCTGAGCGGCGGCGCGCACACGTTTGGACCTATTTTCTGGAGACCACCGGCAGATGCAGTAACGCAAATTGGATAAAATGCCTGCTCTGTTGGCGAAAATGAGCTCGAGAAGCGCCTCGTGGTTCTATGCATTCAGTGTCGTTGTTTTAAGTATTTGTGGATCCACACATGCAGCAAAAAGTTGTAATGGACCATTGCTATCAGTTTTGCCTGAGTCATCCTTCAAAAGCTCTTCAACATCCTCCAATAGTCAGCTGCCTCACTCCGCAAAGCTGAACAGAAGAGAGGGAGAGGGTGGCTGGGCCCCGGAGCGGTCAGACAGACAGCCTTGGCTCCAGCTGGACCTCAGGGAGAAGATGGAGATCACGGCCATCGCTACACAGGGCCGTTCAGGGAGCTCTGACTGGGTGAGCAGCTTTATGCTGCTGTTCAGTGACTCTAGCCTGGCTTGGAAGCAGTACGGACAGAGCGAAGACACTGGGACATACAGAGGGAACACAAACTCAGAGGGTGTGGTCCAACACAAGCTGGTCCATTCCATCGCAGCGAGGTTCCTACGCTTCATCCCACTGGACTGGAGCACTACAGGATGGATCGGCCTCAGAGTGGAGGTCTATGGCTGTGCATACAAGTCAGATGTGGCAAACTTCAACGGCAGGAGTGCTCTGTTGTACCGATTTAACCAGAAGTCCCAGAGAACGGTGAAGGATGTGATCTCCCTCAGGTTTAAGAGCTATGGGGCAGATGGGGTGCTGGTGCACGGGGAGGGACACAGAGGAGACTACCTGACATTGGAGCTGCACCACGGGACCCTGGCTCTGCACCTCAACCTGGatGACGCTAAGCTCTACCCCAGCAGAGGGAATGTGTCAGTGGGCCTGGGCAGTCTCTTGGATGACCAGATCTGGCACTATGTCCTAGTTAAACGCTCCAACAAGCAGGTCAACCTCACCGTGGATGGGCACACACGTCACCTCAGTACCACGGGTGTGGAAGACTCACTGGAGGTGGACTATGAGCTCAGCTTTGGAGGAATTCCTATACCTGGTAAACCAGGAAGCTTCCTTAGGAAGAACTTCCATGGCTGCATAGAGAACCTCTACTATAATGGAGTCAGCATTATCAACCTGGCCAAGCGACGCAAGCTCCAGATCCACAGTGTGGGCAACGTGACCTTCTCATGCTCTGAGCCCCAGCCTCAGATGGTGTCCGCCACCTTCCTGTCCTCCAGCGGTAGCTACCTGTCTCTACCCCTGGGTTCTCTTGGGGTGTGGGGGCTGGACATACACTTCCACTTCAGGACCTGGAACCAGGAAGGACTTCTGTTCTCCACCGGCCTGGCACAGGGATCACAGCACCTGGTGTTGCAAATCAGCGGAGGTCAACTGCACCTAATGGTCCATGGAGCTGCTGAGCAGAAAACCAACATTTCCATAGAAGTTGGTGTAACTGATGGCCTGTGGCATTCTGTTAGTCTGAGCTACAGAGATCGGATGGTTTCCCTGGTCTTGGACAATGAGCCAACATCTACCGTGGACGTACAAAGTCATGCAGACTCAGGCAATAGTGTATTTTTTGGAGGTTGTCCCCAATACAGTGGTGACTGTAAGAAACCTACTGTGGCCTTCCAAGGGTGCATGCGTCAGATCTTCCTAAACAACCAACTTATGGATCTACCCCATGTGCAGCAAGGGCTTTTGGGTAATTACAGCAAGCTTCAGTTCGACATCTGTGGGATCCGCAACAGATGTCTGCCTAATTTTTGTGAGCATGACGGACGATGCACCCAATCATGGGATACTTTCTACTGTGACTGCTCAGGGACAGGCTACACTGGAGAAACCTGTCACAACTCTATTTATGAAGCGTCGTGTGAGGCACACAGACAAATGGGGAGTACGTCTGGCAACTTCTACATTGATCCCGATGGGAGTGGTCCTCTAAAGGCAGCACTGGTCTACTGCAACATGACTGAGAACAAGGTATGGACAGTGGTGGGACACAACAACAGGGGGTCTGTGAATGTGACTGGAGCCACAACAAAGAAGCCATATGTGATGCGGTTCAACTACACTGTCTCCCTGGAGCAGCTCCGCACTCTGATTGGACGGTCTGAGCACTGTCAACAGGAAGTGGTCTACAGCTGCAGGAAGTCCCGTCTCTTCAATACTTGGGACGGGAGGCCCCTGTCGTGGTGGCTGGACGGGAGTGGAGAGAAACAGACCTACTGGGGAGGCTCTGTACCTGGGGTCCAACAGTGCTCCTGCAGCCTGGAGGAGAACTGCATCGACATGAACTACTTCTGCAACTGTGATGCAGACACTCACTTGTGGGTAAACGACACAGGACTGCTGTCCTACAAAGATCACCTACCACTGACTGAGATTGTAATAGGAGACACCAACAGGACAGGCTCAGCAGCTGTATACAGAGTCGGCTCCCTTCACTGCAACGGTGACAGGTTCCTGTGGAATGCAGCCTCTTTCTACCCCGGGTCATCATCCCTCCACTTCCCTAAGTTCCAGGCTGAGCTCAGTGCGGACATCTCTCTGTACTTCAAGACCACGGCTTCCTCTGGTGTTCTCCTGGAGAACCTGGGGACCACTGACTTCATCACGCTGAAGTTGACCACTCCCTCAGCTGTAACATTCATCTTTGACGTGGGAAACGGCCCGGTGGACTTGACGGTGACGTCCCCTGTCCCCCTGAATGATAAGCAGTGGCACTATGTTAGGGCTGAACGCAACTTAAAGGAGGCCTCCCTGCAAGTGGACCAGCTGCCCCTACACACTCTGGAGGCCCCCTCTGAAGGGCACTACCGTCTGCAGCTCAAAAGCCTACTGTTCATAGGAGGATCCACCTTCAAAGAGAGCACTTTCCTGGGCTGCATCCGTGCGTTGACCCTGAACGGCGTGACCCTTGACCTGGAGGAGCAGGCCAAGTTGACCCCAGGAGTGACCCCAGGCTGCCTGGGCCACTGCAACGGCTCTGCTAGTGTCTGTCATAACAGAGGGCGGTGTATGGAGAAAAACAGTGGATATGTCTGTGACTGTACACACTCTGCCTACAATGGACCACACTGCAAGAAAGAAGTGTCAATGTCCTTTGAGAGTGGCTCCTCGGTGACCCTTACCTTCCAGATGCCTTTCCCAGTCATGCACAACAGAGGCAGAGATAGCCAGTCATCTAGCAGTCAGCCAATCCATAGCCAGTCGTCTAGCCGTCAGCCAATCCATAGCCAGTCGTCTAGCCGTCAGCCAATCCATAGCCAGTCCTCAGCCATCTATGCCCACAACGGCGAGTCCAGAGAAAACGTTGCCTTCAGCTATCTGACGACTCACACCCCTGCCATGTTACTCTGTGTCAGCACCTACCATCAACAGTACCTGGCTATCATCCTGGCTAACAACGGGAGTCTGCAGATCTGGTACCGTctgaacagagagaagagagcagagatcTTTACTCCCAAAGTCTCCAGCCTAGCCGATGGGCAGCTCCACCGTGTCCAAGTACACCGGGAAGGCAAAGACCTTTATGTCCAGATTGACAAAGACATCGACCAAAAATACAACCTTTCTTCTGACATGAAGATGAACACACTACGATCTCTGACTTTAGGTAAAGTCACAGGTACATCAGCAGGACATGCTGGTTTGGATGAGGAAGTGCTTAGGGCAGGATCCAAGGGTTTCATTGGCTGCCTGTCGTCTGTCCAGTTCAATCATTTGACACCGCTGAAGACAGCCATTCTGAGTCGTGGAAGCTCATTGGTCCATGTTCTTGGCAATCTAGTTGAATCGAACTGTGGAGCGTTGGCTGATAGTACAACTTCACAATCAGCATCTGAGGGTGTCGATAGGGGCGTAGATCGACTGAAGAAGACAAGAAGTGATTCAGCAGTCATTGGAGGTCTCATCACAGCTGTGTTCCTCATCACCCTCTGTGCCGTGGCCGTGACGTCGTGCTTCCTGTATCGCCGctgcagccacagccacagccacacccacacccacccccTGGAGAAGGCCTCCATCTCACAGAAGAAGGATTCCAGGCACAGCCCGGAACACAGCTACCCTGCAGGCCTGGAGAACAGCTATCCTGTAGACTTGGTCTTGGATCTAAACCTGGACCTACACAGCTCTGTGAGTCACAGCAGAAAGGAGTACTACATCTGATGCCACCATAGCCTTCTTTGCCCAATTTCCTGCCTCCTGTTCCGCACGCTGTTCTGCCTGGCCTCAAATACAGAACAGGCCCCTCTGGTTAGAGCAgccattcatcacaaaacccagtGTTAAGTCACCTGACTGTTCCCGGGCTATCTAGGAGCAGTGATCATTGGTGATCCATTCCCTGTGTGGCTACAAGAAGGACCCAATGGAGGATGGTCATGCCGCAGTGTTATATCTCAAAGGCTGTTTATTGGAGCATGGGAGCTGTACCTCTTTTGATGAGCGATGACAATTGGAGAACATTTATTGTGTTACATTGCTCTAAAGTCAGGAGACAAAAAGCCTCAATGAATCGGATCCCCCCCAGTGACTTTATAAGCCCGCTTTATATAGGCTTCCATTCTGAATGTACAATTAAAGGGATTTATTCATTTGGGGTTGGTTGGGCACCGGTACTCTAACTCACTTACTTGTATTCACTTGTGGATCATGAACGTGATAATGACTAATTAATGATGTTCGACCATCTGCCAAGGCAAGGTCTGAGCAAGCAATGCACCTGCTCTTGCTCCCTGGCTAAACCACTGATCAAATCTCGCTGAGAAGCATTGTGACTATGTGCCAAGGTCTTTGTGGCTGGCCCTTTTGTTCTCGGAACATGTCGTTTCTTTTTCTGTTCCCAGTATGTTTGTTGCGAACCTCACTGCCAATAACCCTCGTCCACCATCACCGACATCCCCTCGACATGTTATGCTTTTATGAATCACCAAAGGGTGGTGCAGTAAACTGATACTAGATGTCTGAAAGTCAAAGTGTAGTACAGTACAACGTTATGTGATTGTGCTAGTAACTTTTGAAGTGAATTGTCTCTCGACCTGTAGGAGATAATCAGAGGGAATCTAGGGTATAAAGGTAGGTTCATTCTCAGGAGAGCTCTTGTCCTGGTTGATGTTGTGAGTTTTGTTGAACGGAGAAGTACAGTGTTGTACAAATTTGCTGCGGTCTCCTCCACAATCCATGTTACTTGCTCTTACATTGGTAAAACGGCAAGGCTTTATATTTTGCACAATTAGCAAACCAACAGAACAAGTAAATTGTACAACAAATCTGTTTAGCAAGCTTGCAAGGTATACAAAGGAAACATGTATTCAGGGGATGATTTTCTGTCATGAAAGACGCATGATAAAGGATTGTTATTGCCTGGTTATATTATTTAAAGTGCATTAGGTCATTTATCTACAGTATTTTATTGTAAAAGATGTACAAACGTCACTGACACAATCATTGAATACGATTCATTTAAATATTGCAGTTATTTTGAATTTGTTTTATAGAATTCTTCAGGTATATTGTAAACAAATGTATATTTAATAAAGACATTTTTACAGCTTCATGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1753057 lncRNA downstream 2143 25772308 ~ 25772523 (-) True G1531266
TU1753011 lncRNA downstream 37685 25735449 ~ 25736981 (-) True G1531224
TU1753030 lncRNA downstream 56330 25718025 ~ 25718336 (-) True G1531240
TU1752993 lncRNA downstream 154640 25619827 ~ 25620026 (-) True G1531208
TU1752991 lncRNA downstream 157949 25616396 ~ 25616717 (-) True G1531206
TU1753069 lncRNA upstream 10155 25818444 ~ 25818697 (-) True G1531278
TU1753083 lncRNA upstream 26193 25834482 ~ 25834714 (-) True G1531292
TU1753089 lncRNA upstream 35606 25843895 ~ 25844105 (-) True G1531298
TU1753116 lncRNA upstream 76593 25884882 ~ 25885174 (-) True G1531325
TU1753159 lncRNA upstream 90376 25898665 ~ 25898878 (-) True G1531363
XM_021571439.2 mRNA downstream 3935 25744373 ~ 25770731 (-) False LOC110495917
XM_021571438.2 mRNA downstream 3935 25744374 ~ 25770731 (-) True LOC110495917
XM_021571435.2 mRNA downstream 56886 25634825 ~ 25717780 (-) True LOC110495914
XM_036952418.1 mRNA downstream 143909 25550063 ~ 25630757 (-) False LOC110495916
XM_036952419.1 mRNA downstream 143909 25550063 ~ 25630757 (-) True LOC110495916
XM_021571442.2 mRNA upstream 30215 25838504 ~ 25840385 (-) True s100b
XM_021571446.2 mRNA upstream 126988 25935277 ~ 25961615 (-) False aox5
XM_036952424.1 mRNA upstream 126988 25935277 ~ 25961629 (-) False aox5
XM_036952426.1 mRNA upstream 126988 25935277 ~ 25961629 (-) True aox5
XM_021571448.2 mRNA upstream 165381 25973670 ~ 25976403 (-) False si:ch211-246m6.4
TU1753025 other downstream 65792 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 200995 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 251486 25519421 ~ 25523180 (-) True G1531142
TU1752728 other downstream 623672 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 1380982 24393375 ~ 24393684 (-) True G1529613
TU1755359 other upstream 1379333 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 1379333 27187622 ~ 27189549 (-) True G1533378
TU1755743 other upstream 1945885 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 2052757 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 2226675 28034964 ~ 28036616 (-) False LOC110495955

Expression Profile