RNA id: XM_021571443.2


Basic Information

Item Value
RNA id XM_021571443.2
length 5064
RNA type mRNA
GC content 0.46
exon number 5
gene id sh3bp4a
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25858996 ~ 25884157 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAGAGCACTTTACAGAGCTAGCACTCTTGTAAGGGAGCTGTAAAAGAGCAACGTCCGAAGCCAGTTCCCGAAGTTTCGGATACGTTTTGGGACGTGGTCAACATTTTGGTTaggttttcaacattttgattagGTGTTCACAAGCCATTGTAAGTCTAGATACAATGGAGAGCTGCCAAAGACTGAATATCATAATTGGAGAAATGGAAGAGTAGTAGTGCGACTGCAATTCGGGCAATTCGCACCAAAATGGCGGCCCACCGGATCATCAGAGTGACCAACAGTAACCATGTTCTCCCTCGCTGCAAATCGGAGGGCACGCTCATTGATCTCAACGAAGGGCTCTCTGAGGCTAGCCTCACAGATGTCAAAGTGCCTTCTTCCAGTGCCTTACGGCTGGACAATTCAGCTTCCTTTGTAACTGCTCATGAAGTAGTCGCCATCAAGGACTACTGCCCATCTAGCTTTACCACTTTAAAGTTTTCCAAAGGTGACCGGCTTTATGTGATGGACACGTCGGGTGGAGAGTGGTGGTAtgcccacaacaacacagagatggGCTACATCCCCTCAGCATACGTCCAGCCCATCAACTGTAGGAACTCATCACTCAGTGATAGTGGCATGATAGACAATCTAGGGGAGTGTACAGAGGAAGGGGCTAAGGAATTGGATCTCCTAGGGGAGTGGACAGAGGTGTCCGTTAAGACCACTCCTTATTCGCCTTATTTTAACAGCaatcccttctccctccatacctcctccaccAACCCCTTCATCAACAGTGGTCATCTACATGGTTCTCTGGACCAGAACTGTAATGAGAGGGGAAGGTCCACGGACCTGTTAGTCTTTGACTCCCTGGCCTCCCCAGTCTCCCCTTCGGGACCTAACTCTACCTCCAGGACCACCATGATCAATGGCTTCAGTAGCTGCAACATATTTGACATGATGTCAGCCACCAGCCCCAACCAGGACTTACAGGTTTTACAGACACTGCGAAGGGATAACCCATTCTTCAGGAGCAAGCGATCGTACAGTTTATCGGAGTTGTCCATCCTACAGACACAATCCAACCCCCCCTTGCCTTCTTCCGGGTTCTTCGCCTGCCTCAAGGCTCCCTCGCCAGAGCAGTTTCAGAGCAGGGAGGACTTCAGGACTGCGTGGCTAAACCATCGGAAGCTGGCCAGATCTTGCCATGATCTGGACTCTCTGGGGCAGAGCCCTGGTTGGGGACAGACTCAGCCGGTGGAGACCAACATTGTCTGTAAACTAGACAGTCGTGGAGGGGCCGTTCAGCTCCCAGAAACCCAGATCAGCGTCCATGTCCCTGAAGGACACGTGGATCCTGGAGACACCCAGCAGATCTCAATGAAGGCCCTTCTGGACCCTCCACTGGAGCTGAACAATGACCACTGCTCCACAGtcagcccagtggtggaaatcaAAGTGTCCAACATGGAGACCAAGTCCTTCATCACTCTGGAGATGACCGTGTCCGTGACGGTGAAGAAAGACAGTGGTCAGGTAGCTGAGGTGCTCTGCGTCCGGAGTGACTGCAAGGAGGGACCCTATATAATCATCCCACATGCTTACCTATACAAGGACACAGTACAAGTCCAGTTGGATAACTTGGAGCCGTGTATGTACGTGGTGGTAGTGGTGCAGGCCCAGCACCTCAACCTTAATACAACTGTATGGGACAATGTGTTGAAGAAAGTCACCCTGGGTGTCTATGGGCCCAAGCACATCCATCCTTCATTTAAGACAGTCGTGGCCCTATTTGGGCATGACTGTGCCCCTAATACCCTACTGGTGAGTGAGGTGGGGAAGCAGgcccactcctcccctccagtGGCGCTCACGCTGTGGGGGAAGCATCAGTTTGTCCTGGGTAGGCCCCAGGACCTTCAGGTTGGCCTATACTCCAACATGTCTAACTATATGATTAAGGCTAATGAGCAAACCAGGATGATTCGGGCCTTCCAGGTCAAACTGGGGAAGGTAAGCCGACTCATTTACATGATCACATCCAACAACCCTGAGGACATATCAGACTTCACCTTGCAGGTCCAGGTCAAAGACAGCCTGGATTGTATCCTGGCTCAGTTCTGCGTCCAAACACCGCAACCGCCTCCGAAGAGTGGAGCGCAGAACACTGGCCACAGGCGGTTCCTGAAGAAGAAAGAGGTGGTGGGTAAGATTCTTCTGTCACCTCTGGCCATCACTGCCAAATATCCACAGTTTCAGGAGCGCTGCATCACCAACCTGAAGTTTGGCAAGTTGCTCAAATCTGTGATCAGGCAAAACAAGAGCACATACCTGTTGGAATACAAGAAGGGAGATGTGATCGCCTTGCTGAGCGAGGAGAAAATCAAACTACGAGGACAACTGTGGACCAAAGAGTGGTATATTGGATATTATCAGGGAAAGACCGGTCTTGTTCACGCGAAAAACGTTCTGGTTTTGGGGAAAGTCAAGCCTATTTATTTCTGTGGTCCGGACCTCACAACAACCATGCTAGTGGAGCAGATTTTGAAGCCTTGCAAATTTCTCACATACATCTACGCCTCTGTGAGGACAGTACTCATGGAAAATATAGGGAACTGGAAGACCTTTGCAGACGCACTGGGATATGGGAACTTACCTTTGTCTTGTTTCTGTCGGACTGAACTGGACAACGAGCCTGAGAAGGTTGCCTCGGTTCTGGAGAAGCTCAAGGAGGACTGCACTAACATGGACATCAAGGAGAGAAAGACCTTCCAGAAGGAACTCATGAcaGCCCTGTTGAAGATGGATTGCCAAGGTCTGGTGGCCAGGCTGATCATGGACTTTGTCCTGCTGACCACGGCCGTGGAGGTGGCCCCGCGCTGGAGGGAGCTGGCGGAGAAGCTGGCCCGGGTGAACAAGCAGCAGATGGAGCAATACGATGCTCCGCACAGGGACAAGAACGGCCTGGTGGACAATGAGTCAATGTGGAAGCCAGCCTACGACTTCCTGCTGACCTGGGCGGCCCAAATTGGGGACAGCTACCGGGACGTGATCCAGGAGCTGCACCTGGGCCTGGACCGAATGAAGAATCCCATAACCAAGCGCTGGAAGCACCTCACCGGAACGCTCATTCTGGTCAACAGCCTAGATACGTTACGCAGCTCTGCCTTCAGCCCTGTAGGACAGGGGGACTATGCCATTTGATCTGTATCCATCTACatctgaaatggcatcctattccctacatagtagtgcactagtttttgcaagaacctggtcaaaagtagtgcgatATATAGcgaatagtgtgccatttaggatgcacacTGAGTCTCTGGAGCTTGGCACTATGGATCCAGCAGGACTACTACTGGTCTCCTCCAGCCCTCAGGATGACCAATCAGCAATCACACCTTTACCATCGCTGTTATACCAGGAACTTTCAACTCTTGACCCTGCTCCCATCCTCTTGCACAGGACTACAATGGTTTGTAACCAGTAACCACCACTTCACACAGAGCACATGTTACTGTAGGTCCATTTCTCTGGCGGGTTAAACACTCTCATTGGAATTTACAGTAGATTATTATTAAGCCACAATATTGATGTGATTTCATAATGGTTGATGTTTCAATCAATTTCTAAAGGGTGGTTTTTAATCTGTATTGTCTTTTGctacacattttttttctacAAAATGTGGCATAGCACTCATTTTTATGGCTTTTTTTCactaaatatatatttcaaatgaAAAATATACAGAAACTTGATTTATGAAGTGCATTATACGCAATCACTTCTGATTTCTATTTCTATCCCCCTTATGTGTTTCTGTGCTGAAAATCTCTTTTTGACTGCTCTTTGTACTTTTTGCGTTCCAAAACAGTTAGGTGCTAGCCTAGATCAGTTTATTGTTCTACACAAAAGTATCATCATTTCAGAATAAACCCCCTTTGGTTAGTTTCCTCTATGTTCACTTTAGGACAAAATGCGTGCCACAAAAATCTGAAGAATAATTACATAATGTATCCAGCAAGGATCTTTCCTCTTTGTTTTCTGAAAATGTAAATGCAGAATTACCTCACGATATGGTCTCtttatttcatttgttttaacCAGCAGTAACGGAATGAACAATTCTTTTGAGGAATTCAATTAGATGTGATGGTTTAAATAGTTTGGTATGTTTTGTGAATGCAGATGAAATGTTAAAAGTATTATTTGCATAGTTAAATGGTCACACTGGTCTGTGACGGTACAGATTGACAAGTTCTGCACTTCGATGCCTCTATTAGTTGTTGTCTTTACCTGTTGGTTCATATTAACTCAATAAAATGGCTGACAATTCTAAAGTGCCTCTGTCAGGCAGTGTGCAGCTTTCATGGTCGGAATTTGTGTTCCGTGATTCTACATTCACAGACATTATTAAACATAATTTGTCTCAGTATGGTCCTACACAAAGGAGCACAGTGAAAGAGTAGCCTAGGCTACAGTGTTTTCTGGGGAGGAGGTATTGGACTCTTGGGCTAGTGGCCAGTTGGCTTGTTTGCTAATTTAAAGCATTCCTAAGCATTTGCATCAGGCTGATTCATGAGATCAATCTCATACTGTAGATAAATAACACAATTAATTGTAGACTTGCAAAAGGaatccatttttttttgttgcatttccATAAAAAGATGGACTTTTAATGAGGTAACTGATTAATGAATTAAGCTAAAACAATTCTGGAATTAATGAAAACTCAAAGATATTATAATGAACAACAAATCACAGTAATATATGGATGGATTAAATACTGTATGCAACAGGATCTCACAAACTAATTTCCAGTCTTGACGTTCGTCCAACTTGCGCCAAGGTCTAATTGCGAGGCTGCAGTCAAACGTCAAATTATGCCGTCAAAAAGTGAGATTGGgttgcagacgctcttatccagagcaacttacagttggtgcattcatcttaagatagcaagGTGAGACGACCACATATCAGTCGTAGTAAGTTAATTCTTCCTCAATAAAGAAGTTATGAGCAAAGACAGTGCTAGTAAGAccagtg

Function

GO: NA

KEGG:

id description
K20066 SH3BP4; SH3 domain-binding protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1752682 lncRNA upstream 18643 25838506 ~ 25840353 (+) True G1530923
TU1752665 lncRNA upstream 36757 25821915 ~ 25822239 (+) True G1530909
TU1752646 lncRNA upstream 61885 25796876 ~ 25797111 (+) True G1530890
TU1752607 lncRNA upstream 88292 25769898 ~ 25770704 (+) True G1530853
TU1752582 lncRNA upstream 224323 25634205 ~ 25634673 (+) True G1530832
TU1753123 lncRNA downstream 8139 25892296 ~ 25892932 (+) True G1531332
TU1753248 lncRNA downstream 146568 26030725 ~ 26031545 (+) True G1531446
TU1753253 lncRNA downstream 152734 26036891 ~ 26037165 (+) True G1531450
TU1753395 lncRNA downstream 384672 26268829 ~ 26270336 (+) True G1531582
TU1753408 lncRNA downstream 422741 26306898 ~ 26307114 (+) True G1531595
XM_021571429.2 mRNA upstream 451559 25405613 ~ 25407437 (+) True LOC110495909
XM_021571428.2 mRNA upstream 455432 25397926 ~ 25403564 (+) True LOC110495908
XM_021571419.2 mRNA upstream 586485 25264359 ~ 25272511 (+) False LOC110495902
XM_021571421.2 mRNA upstream 586485 25264456 ~ 25272511 (+) False LOC110495902
XM_036952411.1 mRNA upstream 586486 25265131 ~ 25272510 (+) True LOC110495902
XM_036952422.1 mRNA downstream 9160 25893317 ~ 25896446 (+) False arl4ca
XM_036952423.1 mRNA downstream 9167 25893324 ~ 25896446 (+) True arl4ca
LOC110496782 mRNA downstream 46027 25930184 ~ 25934979 (+) False LOC110496782
XM_021571447.2 mRNA downstream 77560 25961717 ~ 25973319 (+) True bzw1a
XR_002469490.2 mRNA downstream 368964 26253121 ~ 26264958 (+) False kynu
TU1752680 other upstream 19261 25838506 ~ 25839735 (+) False G1530923
TU1752681 other upstream 19261 25838506 ~ 25839735 (+) False G1530923
TU1752534 other upstream 287650 25566471 ~ 25571346 (+) True G1530785
TU1752288 other upstream 703101 25154733 ~ 25155895 (+) True LOC110495895
TU1752290 other upstream 709528 25148983 ~ 25149468 (+) False LOC110495895
TU1753186 other downstream 50023 25934180 ~ 25934958 (+) False LOC110496782
TU1753187 other downstream 50023 25934180 ~ 25943678 (+) True LOC110496782
TU1754169 other downstream 873212 26757369 ~ 26757677 (+) True G1532307
TU1754835 other downstream 1752383 27636540 ~ 27651825 (+) True LOC110495947
TU1755008 other downstream 2062921 27947078 ~ 27950222 (+) True LOC110495958

Expression Profile