RNA id: XM_036952423.1


Basic Information

Item Value
RNA id XM_036952423.1
length 2884
RNA type mRNA
GC content 0.40
exon number 2
gene id arl4ca
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25893317 ~ 25896446 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAACCTTGTGAACCAACAGTCTCTCCACAGCGCTTCGCGTCAGGATGTTCTTTTTTTCGCTGATAACAGAGATGTTCTGAATTTCGGCTACCTGGCCTCTTCAGAGAAGGTTATCTACTTTGAGAAATGCGTGCTTGCAGAATGCAATAGCAGATGATGGAACAACAATTACTTTTTTTCACGGAGATCTAAGATATAGCCCATATGTATGCTTAGCATAAAGCAGGTGCCTCATATTTGACTTCTCATTCACCAGTGCGTAAAATGGGTAACAGTTTTTCTAACATAGCTGCTTTTCAGTCCCTGCATATTGTCTTGCTGGGTTTAGATTCTGCCGGTAAAACGACTGTCCTGTACCGCCTGAAATTCAACGAATTTGTGAACACTGTTCCCACAATCGGATTTAACACCGAGAGGATAAAACTAAGTAACGGTACCGCCAAAGGGATCAGTTGTCATTTTTGGGACGTCGGGGGACAGGAGAAGCTAAGACCGTTATGGAAATCGTACAGTCGGTGCACGGATGGCATTATTTACGTAGTGGACTCAGTGGACGTGGACAGACTAGAGGAAGCCAAAACAGAACTACATAAAGTTACCAAATTCGCAGAAAACCAAGGGACTCCACTACTGGTGATAGCCAATAAGCAGGACTTGCCCAAGTCTCTACCTGTCCATGAGATTGAGAAGCAACTGGCACTGCATGAGCTCAGCCCTTCTACCACTTACCATGTCCAGCCTGCATGTGCCATCATAGGTGAAGGGCTCCATGAAGGCATGGATCAACTGTATGAAATGATTGTGAAACGAAGGAAATCATTGAAACAAAAGAAAAAGAGATAAAGACTCATTACTGTAAAGTTGACCCCTATCTTCTGAGCTGCCTGCTACTGTACCATGACTTTTGCCGTAGTAGGTATGTCAGGTGATTCTTGTTATGCAGAAGGTTACACTtgcagtgtttaaaaaaaaaaatgatacacTGTATAGCTTTGGGGTTATTGGTGAAGTTAGTCACTTTTAGCTGTGCTGTTACATTCAATCACACATAGGGAGGAAAATAAAAAGTTGCCTCTTGCTATCAGAAATGTCCTTGACAGGCTGGTACCTGTTTGTTGCTGCTTCACAGTATTTTCTTgtcaatagttttttcccctggAAAGTGAATGCCCTACACAGCCATTTTTGACAGACTGGAGTAGCAAACATTATTTCCAGATTAGAATTAACGTCATTAATCAATATCAATGTGCTTATAATTTTTCCACTTTGCATGCTCTGTTTATGTCACTAACACATTTTGAGAGAGACCGTCCATTTCGTTCTAATATTTCCCCTACTCCTTCGATAACTGGGCAAACAGTGCTGTTTTATAGTAGAATACAATAGCCTATATTGGGTTTAATGTGTCTTTCAAATAAAGAAGGCTATTCATAATTTGCACGTTTcatcacaatattgttttgaatgtttgttttatgacTGATGCCCAGctgagcattctactcaatgcagTGTCAGTAAGTGCCAAGGAAGATTTAGTCTGAAGTGCATTACTGTGGCTTGGAAACGCGATGACATTCCGAAAGGAAGCAAATAATTAGTACGACAAGcttttgtcattattgttatgtcgccagattgactttagatgcagtataacattagctagctagctaagattgaagGGAGCGCAAACATTTgttttgctagctaacgttagcgttgTTACCTATTTCTTGACAAACTTTGCTATCTCACGACAAAGTTGTTTTCTACTAATTATTTGTCTTCTTTAGTAATATCTTCTCATTTCCAGGCCACGATTGTGTAATTTTAACGAAACAGTCATTAGCCCCCGTTCAGAAAGACTGAGCATTAAATCAGTCTGACATCAATATGCTGCGGTATCTGTAGAACGTTGATAACAATGGTAACGACATGATGGAGGTGCAACCCCATGAGACATTATGGTTGAAATCCAAACATTTAAAAGACACACCcgatcccctcagccctcaaaataagtggacacttctgatgatgtTTCATGACGTCTGACAAGTATACACTTGCAGGAAAAGGGGCAAGGGTggaaggaatgatttttaaatggaccaccCATGGCCGGATATTCATCACTCGTTCATCCTGCGATGATTGTGTTTtcatataatgattgtgttttcatatatgcgctacagtcaattatgagtgcatgtctacttatacTAAATATCTAATTATTagtctactgtatgatagctagcaaattaattagcttactaacgttagcctgcctagctgaaACTTATGAAGGAGGAAAATGTTTTacttctacaatttccaaaagataaccaaacaaaaacatatttacattTTACAATATGTGTTTGTGCCGTcgtgtgcattagtagcacattttctaacttatttacataattttttacttacacttgtttgttgacttctccattgatGCTGTTTTTAAGTTTTTGCggacttttcttagcggatgtacaatcgtcactaattgaattatggggagtttcaggccccagagtgaacataattgtagACTCTCAAAGCCGACTAAAAACAGGGGCTGAGGGGATTACGTGgtaaacttcccttgcttggctaatcatttgaaCCGCCCTCCAATATGGCGACGGGGATTCCGCAAGGGCAGAAGGGTAGGGTAAGTGGACAAGGGTGTGTCTtttttaagtgtttggactgcAAACCTATGTGTTCTAACTTCAATAGTGTGATACTCAGCCCCGTTCTTATTGCTACTTCCTCGGCTACATTGGtagtagttaaataaaggttccatacatttaaaaaaaaaaacgaaatgtactgttttttttgtattat

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1753123 lncRNA upstream 392 25892296 ~ 25892932 (+) True G1531332
TU1752682 lncRNA upstream 52971 25838506 ~ 25840353 (+) True G1530923
TU1752665 lncRNA upstream 71085 25821915 ~ 25822239 (+) True G1530909
TU1752646 lncRNA upstream 96213 25796876 ~ 25797111 (+) True G1530890
TU1752607 lncRNA upstream 122620 25769898 ~ 25770704 (+) True G1530853
TU1753248 lncRNA downstream 134279 26030725 ~ 26031545 (+) True G1531446
TU1753253 lncRNA downstream 140445 26036891 ~ 26037165 (+) True G1531450
TU1753395 lncRNA downstream 372383 26268829 ~ 26270336 (+) True G1531582
TU1753408 lncRNA downstream 410452 26306898 ~ 26307114 (+) True G1531595
TU1753593 lncRNA downstream 442378 26338824 ~ 26339078 (+) True G1531761
XM_021571443.2 mRNA upstream 9167 25858996 ~ 25884157 (+) True sh3bp4a
XM_021571429.2 mRNA upstream 485887 25405613 ~ 25407437 (+) True LOC110495909
XM_021571428.2 mRNA upstream 489760 25397926 ~ 25403564 (+) True LOC110495908
XM_021571421.2 mRNA upstream 620813 25264456 ~ 25272511 (+) False LOC110495902
LOC110496782 mRNA downstream 33738 25930184 ~ 25934979 (+) False LOC110496782
XM_021571447.2 mRNA downstream 65271 25961717 ~ 25973319 (+) True bzw1a
XR_002469490.2 mRNA downstream 356675 26253121 ~ 26264958 (+) False kynu
XM_021571451.2 mRNA downstream 356675 26253121 ~ 26264996 (+) False kynu
XM_021571450.2 mRNA downstream 356675 26253121 ~ 26267132 (+) False kynu
TU1752680 other upstream 53589 25838506 ~ 25839735 (+) False G1530923
TU1752681 other upstream 53589 25838506 ~ 25839735 (+) False G1530923
TU1752534 other upstream 321978 25566471 ~ 25571346 (+) True G1530785
TU1752288 other upstream 737429 25154733 ~ 25155895 (+) True LOC110495895
TU1752290 other upstream 743856 25148983 ~ 25149468 (+) False LOC110495895
TU1753186 other downstream 37734 25934180 ~ 25934958 (+) False LOC110496782
TU1753187 other downstream 37734 25934180 ~ 25943678 (+) True LOC110496782
TU1754169 other downstream 860923 26757369 ~ 26757677 (+) True G1532307
TU1754835 other downstream 1740094 27636540 ~ 27651825 (+) True LOC110495947
TU1755008 other downstream 2050632 27947078 ~ 27950222 (+) True LOC110495958

Expression Profile