RNA id: XM_021571446.2


Basic Information

Item Value
RNA id XM_021571446.2
length 4582
RNA type mRNA
GC content 0.51
exon number 33
gene id aox5
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 25935277 ~ 25961629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTTGTCATGATATAATTTTGTTGATAATGTGTGTAAAGCTCAAGCCATGTGACGTTGGTCAATCCCAAAGGTATTTAAACTGCCACATATGATAATTCAGAGACAGAGTTTCAGATTGCTGCTTTTGAGTAAACATCAATGATGTCCTCTCCCAACAGTTGCAGTGAATTGATTTTCTATGTAAATGGACAAAAGatcTTAGAGAGAAATGCCGATCCAGAGGAGGTGCTCCTCAAATTCCTCAGAAGGAAAGTGCTTCTAACTGGGACTAAGTATGGTTGTGGAGGGGGTGGATGTGGGGCCTGCACGGTCATGGTGTCCAAATATGACCAACTCAACAACAGAGTTCTCCACTACACTGTTAACGCCTGTCTGCAGCCCATCTGCACACTGCATGGAGCTGCTGTGGTAACAGTGGAGGGTATTGGCAGCACAAAGACCAAACTGCATCCGGTTCAGGAGCGTATAGCCAAGGCCCATGGCTCTCAATGTGGTTTCTGTACTCCAGGCATGGTGATGTCCATGTACACTTTACTGAGGAACAAACCACATCCTACCATGGAAGACATCAGAGAGGCTCTAGGAGGAAACCTCTGCCGCTGTACTGGCTACAGGCCGATCATTGACGGGTTCAAAACTTTCTGTGATGCATCAGAGAATGGAGAGGGATGTTGCCAGAATGGAGAATCTGGGGGAAAGTGCTGTATAGAGAATGGAACTAAGCAACACAATGATAGTGATATCTCAGAGGAGCTGTTCCATATGGACAATGTTCTCCCGCTTGACCCATCCCAGGACCTCATTTTCCCTCCAGAACTCATGATTATGGGAAAGAAACGTGCCTGTGGCAGTCTGTGTTTCCAAGGCGATAGGCTGAAGTTGATATCTCCAGTAGATCTGACCAATCTGCTTGAGTTGAAAACAGAATATCCTGAAGCCCCTGTGGTGGTTGGCAACACAACTATAGGACCAAATATGCAAGTGAAAGGAGTCCATCATCCTCTCACCATCTACGCCGGGAGAGTTTCAGATTTACATACTGTGACGTGGGGGAAGGATGGTGTGAGTATGGGGGCAGTCTGCACCCTGTCCAGTctgaaggaggagatggagagggctgtgagggagatggaggcagagagaaCCAGGGGGTACCAGGCCCTGCTACAGACCCTACGGTGTCTAGCAGGGAAACAGATCCGCAACATGGCTACCATTGGAGGCAATATCCTCAGTGCCAACCCAAAGTATGATCTCAATAGTGTTCTAGCTGCCTTGGACTGCACGCTGCAGGTCATGTCTAAAGAAAATGGGACAAGGGCGATCACTCTGAATGAAGAACTCTTCACTGGCTTTGGCAAGACAGTGCTTAGACCAGATGAAGTCCTCCTGTCCATTGACATCCCCTACTCCAAACCATGGGAGTTTGTGTCCGCCTTCCGTCAGGCCCAGAGGAGGGAGTTTGCCTTCTCCATTGTCAACGCTGGGATGAAGGTGCTCTTCAGGGAGGGCACTAACATAGTGGAGTCTCTCAACATCTACTACGGGGGAGTGGGACCCACACTGGTCAAGGTTGGACGCACATGCCAGAAGCTTGTTGGACGGTCCTGGGGGGAGGAGCTTCTGGCTGATGCCTGCAGGCttttggaggaggaggtggagctaTCTGACTCTGCCCACGGAGGGAAGGTGGAGTATCGCAAGACCCTTACCACCAGCTTCTTCTTCAAATTCTACATGCAGGTCCTCCAGGAGCTCAGAGAGAGGGATGTGAACGTGTGTCTTCTACCCCTTGAGTACCTCAGTGCTCTCAAGCCTTTCAAAAACGAAGTGCCCCAGGGACATCACTCTTTCCAGCTTGTGTCCAATGCCcagtcctcccaggaccctgTGGGCCATCCCATGATGCATCAAGCAGCCTTCCATCAGGCTACAGGAGAGGCCCAGTATTACGATGACATACCAGCTGTCCAGGGAGAACTCTTTGTCTACATGGTGACCAGCACCAGAGCGCACGCCAAGATCATCAACATTGACCCATCTGAAGCACTTGGCATGACTGGGGTAGTCACGTTCCTATCAGCTGGAGACGTCCCTGGTCAGAACCGACGGATGTTGTTCAATAACCCAGAGGAACTCTTTGCTGAGGAGGAGGTGTCTTGTGTGGGGCAGATCATTGGGGCTGTggtagcagagagcagagagcaggccAGGAGAGCAGCTCAAATGGTAAAGGTCACCTACCAGGATCTACTTCCTGTCTTCTTCACAATAGAAGAGGCCATCCAGCATCAGTCCTTCTTTGACCCAAAGAGGAagctggagagaggagacatggacaaaGCCTTTGAGACAGTGGATCAGATTCTGGAGGATGAGATCTACTTGGGAGGTCAGGAGCATTTCTACATGGAGACTCAGGGCCTTATTGCAGTGCCCAAAGGAGAGAATGGAGAACTGGAACTGTTTGTGGCCAGCCAGCATTCAGCATACACTCAGGAAGTGGTAGGAATCACTCTGGGCATCGACTCCAACAAGATCACATGTCACGTGAGGAGGTTGGGGGGAGCGTTCGGTGGCAAAGTCATGAAGATTGCCTCCCTCTCTGCTATCACTGCCACAGCTGCAGTCAAGACAGGGCGACCAGTACGCTGTGTCCTGGAACGTGGAGATGACATGCTGATCACCAGTGGCAGACACCCCTTCCTAGGAAAATACAAGGTGGGATACAACAACGATGGAACCATCATGGCAGCGGACATCACCTACTACAGTAACGGGGGGTGCACCCTGAATGAATCATTAGCTATCATGGAGAAAGCCCTGCTTCACATGGACAATGGCTACAAGATCCCTAACCTGCGTGGGCGTGGCTTGGTGTGTAAGACCTACCTGCCCTCCTACACAGCGTTCCGAGGCTTCGGAGGACCCCAGGGACTCATGGTGATGGAGAGCGTGCTGCACGAGGTGGCTGTCAAATGTGGCCTCCCTCCACAGAAGGTGAGGGAGATCAACATGTACCGGGAGGAGGAGTGCTATACCCACTACAAGCAGCTCTTCTCCCCCCGCGACATGCTCCGTTGCTGGGACGAGTGTCTAGACAAGGCTGGGTACCACGATCGCCTCCAGGCCATCCAGCAGTTCAACACCTCCAACCGCTGGAAGAAGAGGGGCATCTCTGCTGTGCCTATGAAGTTTGGCGTCGGCTTCTCCAAAGGCTTCTTCAACCAGGGTGCAGCTCTGGTGAACATCTACAAGGATGGCTCGGTGTTGGTGGCACACGGAGGCACAGAGATGGGCCAGGGAATCAACACAAAAGCCCTCCAGATTGCCAGTCATATCCTGAAGGTGCCCATGTCCTCAATCCACATCAAAGAGACCTGTACGGGCAACGTTCCCAATGCTGcaccctcagcagcctcctttgGCACGGACGCAGTGGGCATGGCAGTCAAGGATGCTTGTGAGAAACTGATGCGGCGCTTGAAGCCATTCATGGAAAATCATCCCAAATATACATGGCAACAATGGATTTTTGAGGCTTATTGCCAGAAGGTCAGCTTATCTGCAACTGGCTTCTTCATGGGACCTCACACGGATATGGACTGGGAGAACAGCGAGGGTCCAGCCTACTATTACTTCACCTTTGGGGCCTGCTGCTCAGAAGTGGAGATTGACTGTCTCACTGGAGATCACAAAAATCTCAGAACAGATATTGTGATGGATGTCGGGAGGAGCCTCAACCCAGCTATAGATATAGGACAGATCGAGGGAGGCTTCGTCCAGGGCATAGGTCTGTACACCATAGAGGAGCTGCAGTTCTCTCTCGAGGGGGTTCTGATGACCAGGGGTCCGTCCCAGTACAAGATTCCTGCCCTCTGTGACGTCCCTCCTCAGTTTAACGTCCACCTGCTGGCCAACGCACAGAACCCACATGCCATCTACAGGTCCAAGGGTATAGGCGAGCCTCCAGTGTTCTTGGCCAGCACCATCTTCTTTGCTATAAAGGAGGCAGTTGCTGCAGCCCGTAGAGAGAGGGGGCTAGGGGACAGCTTCCCTCTTAGTTCCCCTGCTACTGCGGAGAGGATACGCATGGCCTGTGAGGACCAGTTCACTGAGATGGCTCCATCTCCAGAGAAAGGAACATTCAAACCATGGAGTATCAACATATGAGCCAACTGAATATGACTTGGCAGCCTCGTCAGACCTGGACTTGGCTCCAACTATTAATCATTCACCCCATCGTAATGTATTGTTCGGTGTTGGTGGGATGCTTGCAGATTGTGTGCTTTCTGGATGACTTGGAAATGTGTCTAGAGTATGTGCTTGACGCTGTTGCTTGAAATTTCTACTTTTGTCCTAGGGTAAGATAAATACACCATCTGGTGTTGGGTCGTGTATGTTTTGGGCTGTTTGTTAAAACTTGAACAACCTGCATCTGTGACCTACAGCCAAGTGCAGTCAACATACAGAACTCAGATGAACCTAAAAATTAGAACTGAACTTTGAGCGTTGGTTTAATTCTGTGCCCTAAAGCCTTCTGATGTCTAACTGACTAATAAAGGATGCATTTTTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1753166 lncRNA downstream 29224 25903787 ~ 25906053 (-) True G1531369
TU1753159 lncRNA downstream 36399 25898665 ~ 25898878 (-) True G1531363
TU1753116 lncRNA downstream 50103 25884882 ~ 25885174 (-) True G1531325
TU1753089 lncRNA downstream 91172 25843895 ~ 25844105 (-) True G1531298
TU1753083 lncRNA downstream 100563 25834482 ~ 25834714 (-) True G1531292
TU1753423 lncRNA upstream 13460 25975075 ~ 25975880 (-) True si:ch211-246m6.4
TU1753425 lncRNA upstream 17695 25979310 ~ 25979712 (-) True G1531610
TU1753475 lncRNA upstream 302942 26264557 ~ 26267126 (-) True G1531645
TU1753567 lncRNA upstream 345181 26306796 ~ 26307115 (-) True G1531735
TU1753571 lncRNA upstream 350381 26311996 ~ 26312231 (-) True G1531739
XM_021571442.2 mRNA downstream 94892 25838504 ~ 25840385 (-) True s100b
XM_036952421.1 mRNA downstream 126988 25774666 ~ 25808289 (-) True LOC110495918
XM_021571439.2 mRNA downstream 164546 25744373 ~ 25770731 (-) False LOC110495917
XM_021571438.2 mRNA downstream 164546 25744374 ~ 25770731 (-) True LOC110495917
XM_021571435.2 mRNA downstream 217497 25634825 ~ 25717780 (-) True LOC110495914
XM_021571448.2 mRNA upstream 12055 25973670 ~ 25976403 (-) False si:ch211-246m6.4
XM_036952428.1 mRNA upstream 19825 25981440 ~ 26034935 (-) False si:ch211-246m6.5
XM_036952427.1 mRNA upstream 19826 25981441 ~ 26034934 (-) True si:ch211-246m6.5
XM_036952429.1 mRNA upstream 84813 26046428 ~ 26210379 (-) True lrp1ba
XM_036952436.1 mRNA upstream 552005 26513620 ~ 26589469 (-) False LOC110495928
TU1753025 other downstream 226403 25696539 ~ 25708874 (-) True G1531236
TU1752958 other downstream 361606 25573438 ~ 25573671 (-) True LOC110495915
TU1752921 other downstream 412097 25519421 ~ 25523180 (-) True G1531142
TU1752728 other downstream 784283 25150068 ~ 25150994 (-) True G1530967
TU1751283 other downstream 1541593 24393375 ~ 24393684 (-) True G1529613
TU1755359 other upstream 1226007 27187622 ~ 27188230 (-) False G1533378
TU1755360 other upstream 1226007 27187622 ~ 27189549 (-) True G1533378
TU1755743 other upstream 1792559 27754174 ~ 27798613 (-) True LOC110495948
TU1755806 other upstream 1899431 27861046 ~ 27914520 (-) True LOC110496785
TU1755852 other upstream 2073349 28034964 ~ 28036616 (-) False LOC110495955

Expression Profile